Wall clock time and date at job start Mon Mar 30 2020 06:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46724 * 2 1 4 4 C 1.50697 * 109.47108 * 119.99839 * 2 1 3 5 5 H 1.08001 * 120.00051 * 114.36331 * 4 2 1 6 6 C 1.37872 * 120.00037 * 294.36312 * 4 2 1 7 7 N 1.31523 * 119.99993 * 156.54912 * 6 4 2 8 8 Si 1.86795 * 120.00419 * 336.55456 * 6 4 2 9 9 H 1.48498 * 109.47752 * 179.97438 * 8 6 4 10 10 H 1.48504 * 109.46876 * 300.00178 * 8 6 4 11 11 H 1.48507 * 109.47204 * 59.99664 * 8 6 4 12 12 N 1.46895 * 109.47146 * 240.00235 * 2 1 3 13 13 C 1.48559 * 111.00030 * 175.41540 * 12 2 1 14 14 C 1.54384 * 104.59632 * 200.98856 * 13 12 2 15 15 H 1.08998 * 110.95276 * 263.81459 * 14 13 12 16 16 C 1.54213 * 105.07376 * 23.79181 * 14 13 12 17 17 H 1.09002 * 110.93783 * 240.11750 * 16 14 13 18 18 C 1.48569 * 111.00302 * 59.99998 * 12 2 1 19 19 C 1.52945 * 109.24807 * 116.97537 * 16 14 13 20 20 C 1.52973 * 109.53463 * 299.84079 * 19 16 14 21 21 C 1.52987 * 109.47814 * 60.19133 * 20 19 16 22 22 C 1.52952 * 109.03420 * 140.79159 * 14 13 12 23 23 C 1.52978 * 109.52811 * 185.52190 * 22 14 13 24 24 C 1.52978 * 109.55351 * 59.99672 * 19 16 14 25 25 H 1.09002 * 109.47128 * 52.84238 * 1 2 3 26 26 H 1.09001 * 109.47164 * 172.83515 * 1 2 3 27 27 H 1.08994 * 109.47265 * 292.83487 * 1 2 3 28 28 H 0.97001 * 119.99455 * 354.94392 * 7 6 4 29 29 H 1.09001 * 110.41206 * 319.77673 * 13 12 2 30 30 H 1.09008 * 110.40646 * 82.21182 * 13 12 2 31 31 H 1.09006 * 110.40971 * 277.83249 * 18 12 2 32 32 H 1.08998 * 110.41625 * 40.16099 * 18 12 2 33 33 H 1.09003 * 109.43597 * 179.86051 * 19 16 14 34 34 H 1.09004 * 109.46921 * 300.18965 * 20 19 16 35 35 H 1.09003 * 109.46971 * 180.19120 * 20 19 16 36 36 H 1.09000 * 109.47121 * 240.06181 * 21 20 19 37 37 H 1.09003 * 109.47111 * 120.07116 * 21 20 19 38 38 H 1.09003 * 109.44304 * 65.66785 * 22 14 13 39 39 H 1.09001 * 109.47215 * 180.20130 * 23 22 14 40 40 H 1.09002 * 109.47158 * 300.18873 * 23 22 14 41 41 H 1.08994 * 109.47090 * 59.75517 * 24 19 16 42 42 H 1.08997 * 109.46489 * 179.74086 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5761 -1.6385 1.1340 6 6 1.7977 -0.1754 2.4793 7 7 1.8014 -0.9539 3.5394 8 14 1.4746 1.6549 2.6659 9 1 1.2531 1.9750 4.0989 10 1 2.6450 2.4179 2.1628 11 1 0.2681 2.0268 1.8839 12 7 2.0197 -0.6924 -1.1994 13 6 3.5005 -0.6170 -1.2904 14 6 3.8123 -0.8739 -2.7805 15 1 4.0602 -1.9214 -2.9519 16 6 2.5247 -0.4816 -3.5331 17 1 2.1210 -1.3315 -4.0834 18 6 1.5433 -0.0187 -2.4349 19 6 2.8234 0.6942 -4.4644 20 6 3.3149 1.8865 -3.6416 21 6 4.5913 1.4982 -2.8929 22 6 4.9523 0.0475 -3.2176 23 6 5.1787 -0.0982 -4.7235 24 6 3.9014 0.2888 -5.4714 25 1 -0.3633 0.6207 -0.8190 26 1 -0.3633 -1.0196 -0.1282 27 1 -0.3633 0.3988 0.9471 28 1 1.8959 -1.9137 3.4359 29 1 3.8498 0.3721 -0.9939 30 1 3.9593 -1.3854 -0.6681 31 1 0.5282 -0.3362 -2.6738 32 1 1.5845 1.0641 -2.3176 33 1 1.9157 0.9725 -4.9999 34 1 2.5463 2.1744 -2.9243 35 1 3.5242 2.7249 -4.3060 36 1 4.4286 1.6006 -1.8200 37 1 5.4066 2.1529 -3.2008 38 1 5.8642 -0.2269 -2.6873 39 1 5.9935 0.5560 -5.0335 40 1 5.4355 -1.1322 -4.9540 41 1 3.5509 -0.5616 -6.0561 42 1 4.1098 1.1262 -6.1372 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383849678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:14 Heat of formation + Delta-G solvation = -27.396180 kcal Electronic energy + Delta-G solvation = -19897.651782 eV Core-core repulsion = 17261.586880 eV Total energy + Delta-G solvation = -2636.064902 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 6.55 seconds Orbital eigenvalues (eV) -42.24555 -38.26390 -35.18807 -33.23330 -32.97554 -31.75293 -29.58772 -28.42918 -26.49548 -23.92644 -23.50291 -22.11442 -21.79958 -21.12876 -19.60987 -17.72272 -17.17169 -17.10637 -16.51826 -15.78047 -15.56311 -15.14404 -14.95612 -14.32438 -13.97955 -13.91866 -13.59565 -13.29576 -13.01408 -12.89988 -12.73721 -12.67076 -12.63088 -12.39573 -12.23992 -12.00720 -11.88477 -11.80928 -11.61441 -11.48053 -11.02382 -10.63730 -10.62664 -10.55340 -10.43128 -9.08228 -8.76665 -6.32765 1.40819 1.46515 1.67096 2.45608 2.98523 3.29756 3.55691 3.62738 3.79119 4.11720 4.15733 4.27371 4.33208 4.36735 4.38139 4.53097 4.53895 4.55099 4.59108 4.66390 4.70891 4.76142 4.78060 4.82529 4.96896 4.98666 5.05476 5.13801 5.17961 5.21116 5.26148 5.32492 5.39619 5.45994 5.51499 5.52920 5.58832 5.66228 5.85949 6.05360 6.20806 6.48305 6.73821 7.41193 8.59725 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.034024 B = 0.006825 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.762897 B = 4101.420994 C = 4124.990363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.185 3.815 3 H -0.013 1.013 4 C -0.594 4.594 5 H 0.017 0.983 6 C -0.013 4.013 7 N -0.931 5.931 8 Si 1.075 2.925 9 H -0.284 1.284 10 H -0.271 1.271 11 H -0.248 1.248 12 N -0.518 5.518 13 C 0.051 3.949 14 C -0.078 4.078 15 H 0.073 0.927 16 C -0.074 4.074 17 H 0.082 0.918 18 C 0.026 3.974 19 C -0.075 4.075 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.078 4.078 23 C -0.106 4.106 24 C -0.106 4.106 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.253 0.747 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.054 6.635 -20.147 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.076 3.924 3 H 0.005 0.995 4 C -0.632 4.632 5 H 0.036 0.964 6 C -0.212 4.212 7 N -0.566 5.566 8 Si 0.896 3.104 9 H -0.210 1.210 10 H -0.196 1.196 11 H -0.173 1.173 12 N -0.242 5.242 13 C -0.077 4.077 14 C -0.097 4.097 15 H 0.091 0.909 16 C -0.093 4.093 17 H 0.101 0.899 18 C -0.101 4.101 19 C -0.093 4.093 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.097 4.097 23 C -0.144 4.144 24 C -0.144 4.144 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.590 7.254 -18.970 20.625 hybrid contribution 0.583 -1.143 -0.068 1.284 sum 4.173 6.112 -19.038 20.426 Atomic orbital electron populations 1.22006 0.96864 1.00335 0.99868 1.19542 0.92786 0.91157 0.88918 0.99533 1.22012 1.39389 1.09098 0.92704 0.96428 1.27019 0.93042 1.09277 0.91891 1.70966 1.47197 1.05544 1.32907 0.83662 0.78772 0.71371 0.76591 1.21007 1.19609 1.17255 1.65271 1.06640 1.50442 1.01848 1.23010 0.89334 0.98980 0.96404 1.21892 0.95870 0.99270 0.92631 0.90877 1.21870 0.93861 0.98338 0.95197 0.89932 1.23404 0.99171 0.97118 0.90445 1.20999 0.99083 0.93741 0.95521 1.21644 0.96823 0.98138 0.98840 1.21641 0.98496 0.96301 0.99297 1.20989 0.96797 0.94467 0.97408 1.21489 0.98231 1.01809 0.92854 1.21493 0.94294 1.01725 0.96852 0.92815 0.94007 0.93932 0.93819 0.94369 0.94553 0.91076 0.93493 0.90101 0.93232 0.90211 0.94094 0.90581 0.91854 0.90801 0.91730 0.91334 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 8.59 71.98 0.62 -5.34 16 2 C 0.18 9.08 1.42 44.17 0.06 9.15 16 3 H -0.01 -0.62 6.54 -2.38 -0.02 -0.64 16 4 C -0.59 -35.18 8.30 25.60 0.21 -34.97 16 5 H 0.02 1.16 7.68 -2.91 -0.02 1.14 16 6 C -0.01 -0.78 5.19 84.65 0.44 -0.34 16 7 N -0.93 -59.66 13.70 21.45 0.29 -59.37 16 8 Si 1.07 51.21 26.45 68.60 1.81 53.02 16 9 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.25 -10.59 6.18 99.48 0.61 -9.97 16 12 N -0.52 -22.57 5.19 -860.68 -4.47 -27.04 16 13 C 0.05 2.06 5.12 86.45 0.44 2.50 16 14 C -0.08 -2.34 3.17 -9.93 -0.03 -2.37 16 15 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 16 C -0.07 -2.01 3.17 -9.93 -0.03 -2.04 16 17 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 18 C 0.03 0.89 4.68 86.45 0.40 1.29 16 19 C -0.07 -1.57 2.76 -10.83 -0.03 -1.60 16 20 C -0.12 -2.65 5.37 30.58 0.16 -2.49 16 21 C -0.12 -2.99 5.37 30.58 0.16 -2.83 16 22 C -0.08 -1.91 2.75 -10.82 -0.03 -1.94 16 23 C -0.11 -1.95 5.71 30.58 0.17 -1.78 16 24 C -0.11 -1.79 5.71 30.58 0.17 -1.61 16 25 H 0.05 2.02 7.33 -2.39 -0.02 2.00 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.04 1.96 5.51 -2.39 -0.01 1.95 16 28 H 0.25 16.54 8.73 -92.71 -0.81 15.73 16 29 H 0.04 1.61 5.05 -2.39 -0.01 1.59 16 30 H 0.04 1.68 7.77 -2.38 -0.02 1.66 16 31 H 0.07 2.32 7.83 -2.38 -0.02 2.30 16 32 H 0.05 1.57 5.12 -2.39 -0.01 1.56 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.30 5.76 -2.39 -0.01 1.29 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.04 1.26 5.76 -2.39 -0.01 1.25 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -66.75 295.68 1.23 -65.52 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.85 Total: 12.24 kcal Atomic # 6 Polarization: -47.10 SS G_CDS: 2.74 Total: -44.37 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -4.17 Total: -86.41 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 1.81 Total: 53.02 kcal Total: -66.75 1.23 -65.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383849678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.125 kcal (2) G-P(sol) polarization free energy of solvation -66.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.55 seconds