Wall clock time and date at job start Mon Mar 30 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 N 1.46893 * 109.47225 * 120.00695 * 2 1 3 13 13 C 1.49917 * 110.99929 * 54.85142 * 12 2 1 14 14 C 1.50028 * 104.45426 * 243.83015 * 13 12 2 15 15 H 1.08998 * 107.40444 * 78.38696 * 14 13 12 16 16 C 1.56441 * 101.37904 * 326.36494 * 14 13 12 17 17 H 1.08994 * 109.90654 * 294.10640 * 16 14 13 18 18 C 1.50157 * 111.00244 * 294.99895 * 12 2 1 19 19 C 1.51503 * 104.51382 * 176.26449 * 16 14 13 20 20 C 1.56324 * 102.70554 * 85.01581 * 19 16 14 21 21 C 1.54089 * 106.40902 * 325.40100 * 20 19 16 22 22 C 1.50652 * 126.72664 * 206.97647 * 14 13 12 23 23 C 1.56503 * 103.05338 * 202.58329 * 22 14 13 24 24 C 1.54150 * 105.99342 * 326.29904 * 23 22 14 25 25 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 26 26 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 27 27 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 28 28 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 29 29 H 1.09000 * 110.44081 * 2.57364 * 13 12 2 30 30 H 1.09009 * 110.43549 * 125.08443 * 13 12 2 31 31 H 1.09002 * 110.85359 * 265.69766 * 18 12 2 32 32 H 1.09004 * 110.85429 * 29.32971 * 18 12 2 33 33 H 1.09007 * 113.30369 * 208.98863 * 19 16 14 34 34 H 1.08997 * 110.06268 * 84.62373 * 20 19 16 35 35 H 1.09000 * 110.05871 * 206.17664 * 20 19 16 36 36 H 1.08999 * 109.63183 * 202.65870 * 21 20 19 37 37 H 1.09005 * 109.62771 * 82.07705 * 21 20 19 38 38 H 1.08999 * 114.00582 * 326.28264 * 22 14 13 39 39 H 1.09007 * 110.13919 * 207.18201 * 23 22 14 40 40 H 1.09001 * 110.24233 * 85.47878 * 23 22 14 41 41 H 1.08998 * 109.61362 * 201.93967 * 24 23 22 42 42 H 1.09004 * 109.60565 * 81.44145 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 7 2.0197 -0.6926 1.1993 13 6 1.4391 -2.0712 1.2982 14 6 0.6130 -2.0408 2.5501 15 1 -0.3213 -1.5324 2.3119 16 6 1.4468 -1.0668 3.4465 17 1 2.4093 -1.5175 3.6886 18 6 1.6406 0.0551 2.4451 19 6 0.6206 -0.9093 4.7066 20 6 1.0606 -2.1413 5.5624 21 6 1.3276 -3.2885 4.5689 22 6 0.2741 -3.2123 3.4346 23 6 -1.0190 -2.7338 4.1750 24 6 -0.8595 -1.2128 4.3685 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9030 -0.5275 -4.4376 29 1 0.8111 -2.2828 0.4328 30 1 2.2330 -2.8133 1.3839 31 1 2.4452 0.7203 2.7584 32 1 0.7131 0.6086 2.2983 33 1 0.7615 0.0539 5.1972 34 1 1.9700 -1.9067 6.1157 35 1 0.2640 -2.4214 6.2517 36 1 1.2432 -4.2456 5.0834 37 1 2.3275 -3.1829 4.1478 38 1 0.1487 -4.1521 2.8970 39 1 -1.1022 -3.2285 5.1428 40 1 -1.9003 -2.9447 3.5693 41 1 -1.4975 -0.8792 5.1868 42 1 -1.1382 -0.6960 3.4501 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383849686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:29 Heat of formation + Delta-G solvation = 15.136433 kcal Electronic energy + Delta-G solvation = -19933.797854 eV Core-core repulsion = 17299.577305 eV Total energy + Delta-G solvation = -2634.220550 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 3.93 seconds Orbital eigenvalues (eV) -42.76540 -38.78485 -35.11921 -32.98832 -32.40028 -31.40159 -29.31305 -28.52902 -27.18597 -24.37649 -23.17795 -22.21802 -21.73710 -20.86556 -18.76166 -18.26804 -17.16582 -16.83919 -16.75861 -16.50390 -15.45363 -15.11977 -14.84234 -14.27633 -14.21087 -13.69574 -13.46673 -13.11175 -13.05043 -12.93844 -12.78993 -12.66322 -12.46743 -12.43884 -12.15402 -12.07742 -11.90510 -11.85771 -11.64293 -11.43208 -11.11057 -10.80401 -10.69207 -10.51615 -10.27744 -8.96894 -8.29956 -6.32315 1.26098 1.32391 1.42655 2.29464 3.03544 3.21828 3.41227 3.50804 3.86513 4.09528 4.16559 4.22186 4.32334 4.37252 4.43334 4.43937 4.50813 4.54705 4.57731 4.63102 4.65533 4.71136 4.80895 4.83647 4.96156 5.00458 5.05005 5.07090 5.13097 5.19657 5.30215 5.33328 5.39536 5.44757 5.46112 5.52997 5.62520 5.63425 5.74047 6.03927 6.26078 6.65733 6.73679 7.32193 8.87341 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.039540 B = 0.006513 C = 0.006320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.977263 B = 4298.012632 C = 4429.213137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.179 3.821 3 H 0.030 0.970 4 C -0.502 4.502 5 H 0.034 0.966 6 C 0.011 3.989 7 N -0.949 5.949 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.296 1.296 11 H -0.251 1.251 12 N -0.529 5.529 13 C 0.066 3.934 14 C -0.122 4.122 15 H 0.064 0.936 16 C -0.096 4.096 17 H 0.078 0.922 18 C 0.040 3.960 19 C -0.073 4.073 20 C -0.109 4.109 21 C -0.116 4.116 22 C -0.076 4.076 23 C -0.112 4.112 24 C -0.119 4.119 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.266 0.734 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.442 -1.098 20.610 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.070 3.930 3 H 0.047 0.953 4 C -0.541 4.541 5 H 0.052 0.948 6 C -0.186 4.186 7 N -0.590 5.590 8 Si 0.778 3.222 9 H -0.194 1.194 10 H -0.224 1.224 11 H -0.175 1.175 12 N -0.253 5.253 13 C -0.061 4.061 14 C -0.141 4.141 15 H 0.082 0.918 16 C -0.115 4.115 17 H 0.096 0.904 18 C -0.087 4.087 19 C -0.092 4.092 20 C -0.146 4.146 21 C -0.154 4.154 22 C -0.095 4.095 23 C -0.149 4.149 24 C -0.156 4.156 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.871 -1.114 20.370 21.526 hybrid contribution -0.920 0.527 -1.260 1.647 sum -7.792 -0.587 19.110 20.646 Atomic orbital electron populations 1.22708 0.99865 1.01115 0.99729 1.19640 0.89984 0.94348 0.89046 0.95264 1.21162 1.30392 1.12397 0.90129 0.94779 1.25781 0.97504 0.99984 0.95317 1.70039 1.47891 1.42536 0.98521 0.85826 0.78957 0.80079 0.77322 1.19435 1.22371 1.17466 1.65188 1.56436 1.02017 1.01626 1.21865 0.96431 0.91158 0.96682 1.22033 0.98940 0.98847 0.94322 0.91754 1.22135 0.99325 0.95369 0.94623 0.90391 1.22717 0.99392 0.96499 0.90115 1.21833 0.93975 0.99044 0.94353 1.22526 1.01599 0.93723 0.96754 1.22255 0.98097 0.99130 0.95884 1.21673 0.96628 0.96492 0.94746 1.22637 0.96119 0.95550 1.00640 1.22258 0.96184 0.96182 1.01002 0.92216 0.94641 0.92886 0.92542 0.93836 0.93146 0.90701 0.93444 0.88504 0.91480 0.90005 0.90822 0.93051 0.90018 0.89661 0.92438 0.90426 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.55 7.65 71.98 0.55 -7.00 16 2 C 0.18 8.68 1.92 44.17 0.08 8.76 16 3 H 0.03 1.47 7.19 -2.39 -0.02 1.46 16 4 C -0.50 -29.68 8.41 25.60 0.22 -29.47 16 5 H 0.03 2.27 7.89 -2.92 -0.02 2.24 16 6 C 0.01 0.66 5.45 84.65 0.46 1.12 16 7 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 8 Si 0.95 46.01 24.37 68.60 1.67 47.68 16 9 H -0.27 -12.33 6.87 99.48 0.68 -11.65 16 10 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 11 H -0.25 -11.30 6.53 99.48 0.65 -10.65 16 12 N -0.53 -22.67 5.27 -866.30 -4.57 -27.24 16 13 C 0.07 2.62 5.51 84.76 0.47 3.09 16 14 C -0.12 -3.63 2.07 -11.31 -0.02 -3.66 16 15 H 0.06 2.00 4.77 -2.39 -0.01 1.99 16 16 C -0.10 -2.60 2.25 -10.53 -0.02 -2.62 16 17 H 0.08 2.24 5.95 -2.39 -0.01 2.23 16 18 C 0.04 1.32 6.24 85.21 0.53 1.85 16 19 C -0.07 -1.47 4.30 -9.50 -0.04 -1.51 16 20 C -0.11 -1.83 5.53 32.12 0.18 -1.65 16 21 C -0.12 -2.32 5.36 31.64 0.17 -2.15 16 22 C -0.08 -1.78 4.37 -9.65 -0.04 -1.82 16 23 C -0.11 -2.12 5.57 32.20 0.18 -1.94 16 24 C -0.12 -2.31 5.36 31.61 0.17 -2.14 16 25 H 0.06 2.19 6.25 -2.39 -0.01 2.17 16 26 H 0.04 1.57 3.27 -2.39 -0.01 1.56 16 27 H 0.05 2.29 6.07 -2.39 -0.01 2.27 16 28 H 0.27 15.87 8.31 -92.71 -0.77 15.09 16 29 H 0.04 1.96 5.58 -2.39 -0.01 1.95 16 30 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.05 1.55 5.95 -2.39 -0.01 1.54 16 33 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.12 6.79 -2.39 -0.02 1.10 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.20 6.57 -2.38 -0.02 1.19 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.08 1.29 6.77 -2.38 -0.02 1.27 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 1.10 6.44 -2.38 -0.02 1.09 16 Total: -1.00 -66.34 287.04 1.20 -65.15 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.92 Total: 13.91 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 2.88 Total: -39.14 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -4.27 Total: -87.60 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.67 Total: 47.68 kcal Total: -66.34 1.20 -65.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383849686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.282 kcal (2) G-P(sol) polarization free energy of solvation -66.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.93 seconds