Wall clock time and date at job start Mon Mar 30 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47102 * 2 1 4 4 C 1.50698 * 109.47478 * 239.99554 * 2 1 3 5 5 H 1.08000 * 120.00110 * 240.00084 * 4 2 1 6 6 C 1.37874 * 119.99945 * 60.00376 * 4 2 1 7 7 N 1.31518 * 120.00095 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00073 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47046 * 89.99973 * 8 6 4 10 10 H 1.48498 * 109.46941 * 209.99810 * 8 6 4 11 11 H 1.48501 * 109.47274 * 329.99892 * 8 6 4 12 12 N 1.46911 * 109.46753 * 119.99605 * 2 1 3 13 13 C 1.50007 * 110.99719 * 180.18877 * 12 2 1 14 14 C 1.48855 * 104.19722 * 117.32415 * 13 12 2 15 15 H 1.09005 * 104.99157 * 285.50634 * 14 13 12 16 16 C 1.56457 * 102.84398 * 33.19472 * 14 13 12 17 17 H 1.09000 * 112.45901 * 69.28591 * 16 14 13 18 18 C 1.49993 * 111.00011 * 300.00263 * 12 2 1 19 19 C 1.52981 * 102.91389 * 189.70719 * 16 14 13 20 20 C 1.56161 * 102.86526 * 275.67289 * 19 16 14 21 21 C 1.54014 * 107.13563 * 35.74168 * 20 19 16 22 22 C 1.49158 * 130.26976 * 159.33983 * 14 13 12 23 23 C 1.56426 * 102.96086 * 149.78825 * 22 14 13 24 24 C 1.54194 * 105.47002 * 33.36586 * 23 22 14 25 25 H 1.08998 * 109.47102 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47477 * 300.00345 * 1 2 3 27 27 H 1.09004 * 109.46634 * 60.00593 * 1 2 3 28 28 H 0.96999 * 119.99980 * 180.02562 * 7 6 4 29 29 H 1.09000 * 110.48859 * 358.64016 * 13 12 2 30 30 H 1.09005 * 110.48056 * 235.99974 * 13 12 2 31 31 H 1.08998 * 110.79817 * 93.30160 * 18 12 2 32 32 H 1.09001 * 110.80067 * 329.81024 * 18 12 2 33 33 H 1.08999 * 113.22359 * 151.79679 * 19 16 14 34 34 H 1.09001 * 109.92108 * 155.14710 * 20 19 16 35 35 H 1.08996 * 109.92337 * 276.33240 * 20 19 16 36 36 H 1.09004 * 109.72178 * 276.62542 * 21 20 19 37 37 H 1.09008 * 109.72192 * 155.97352 * 21 20 19 38 38 H 1.08991 * 113.22142 * 26.84057 * 22 14 13 39 39 H 1.09005 * 110.23698 * 274.38109 * 23 22 14 40 40 H 1.08998 * 110.24335 * 152.35700 * 23 22 14 41 41 H 1.09005 * 109.56926 * 278.78090 * 24 23 22 42 42 H 1.09007 * 109.56344 * 158.43592 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9429 0.8295 -2.6035 8 14 2.3228 -1.1197 -4.0078 9 1 1.3450 -2.1618 -4.4122 10 1 2.4876 -0.1404 -5.1118 11 1 3.6311 -1.7567 -3.7117 12 7 2.0196 -0.6925 1.1996 13 6 3.5191 -0.7085 1.2366 14 6 3.8624 0.0655 2.4609 15 1 3.6762 1.1068 2.1976 16 6 2.6822 -0.2750 3.4299 17 1 2.7068 -1.3109 3.7682 18 6 1.5385 -0.0123 2.4469 19 6 2.8956 0.7042 4.5858 20 6 3.9371 -0.0376 5.4822 21 6 4.8914 -0.7933 4.5386 22 6 5.1117 0.0768 3.2756 23 6 5.1483 1.5347 3.8416 24 6 3.6732 1.9311 4.0525 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.7084 1.1607 -3.4845 29 1 3.9278 -0.2224 0.3507 30 1 3.8878 -1.7312 1.3160 31 1 0.6120 -0.4639 2.8013 32 1 1.4099 1.0571 2.2796 33 1 1.9717 0.9714 5.0988 34 1 4.4971 0.6847 6.0763 35 1 3.4271 -0.7433 6.1378 36 1 4.4485 -1.7480 4.2549 37 1 5.8448 -0.9637 5.0389 38 1 6.0003 -0.1896 2.7035 39 1 5.6202 2.2060 3.1240 40 1 5.6843 1.5576 4.7904 41 1 3.2422 2.2524 3.1042 42 1 3.6136 2.7439 4.7765 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383849691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:43 Heat of formation + Delta-G solvation = 9.265599 kcal Electronic energy + Delta-G solvation = -19711.138632 eV Core-core repulsion = 17076.663504 eV Total energy + Delta-G solvation = -2634.475128 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 6.59 seconds Orbital eigenvalues (eV) -42.75829 -38.44287 -35.26300 -32.57038 -32.39470 -31.43347 -29.08467 -28.60393 -26.92522 -24.15133 -23.21469 -22.17606 -21.80661 -21.08442 -18.48406 -17.92801 -17.23269 -16.84856 -16.67961 -16.38961 -15.36347 -15.06214 -14.51128 -14.35695 -13.81087 -13.46250 -13.14570 -13.05146 -12.93069 -12.78237 -12.70660 -12.60991 -12.51525 -12.45604 -12.28282 -12.20748 -12.10875 -11.86421 -11.80209 -11.41653 -10.98154 -10.72178 -10.55972 -10.52571 -10.27556 -8.96238 -8.13919 -6.26074 1.39339 1.40370 1.50917 2.40003 3.12935 3.30154 3.41507 3.47813 3.85799 4.05962 4.16880 4.22974 4.32960 4.41886 4.49945 4.52839 4.54962 4.57326 4.73221 4.74532 4.77758 4.85466 4.94086 4.98828 5.00907 5.05667 5.06981 5.12198 5.20366 5.26342 5.36163 5.42230 5.46368 5.47621 5.51536 5.61238 5.68608 5.71090 5.75801 6.19970 6.33067 6.63112 6.87985 7.43113 8.92195 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.035558 B = 0.006167 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.259420 B = 4539.258568 C = 4815.574592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.214 3.786 3 H -0.044 1.044 4 C -0.518 4.518 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.269 1.269 12 N -0.531 5.531 13 C 0.071 3.929 14 C -0.130 4.130 15 H 0.045 0.955 16 C -0.089 4.089 17 H 0.091 0.909 18 C 0.046 3.954 19 C -0.079 4.079 20 C -0.108 4.108 21 C -0.111 4.111 22 C -0.069 4.069 23 C -0.113 4.113 24 C -0.121 4.121 25 H 0.030 0.970 26 H 0.026 0.974 27 H 0.060 0.940 28 H 0.262 0.738 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.023 0.977 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.036 0.964 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.582 -0.043 16.358 18.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 H -0.026 1.026 4 C -0.556 4.556 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.194 1.194 12 N -0.256 5.256 13 C -0.056 4.056 14 C -0.150 4.150 15 H 0.064 0.936 16 C -0.108 4.108 17 H 0.110 0.890 18 C -0.082 4.082 19 C -0.098 4.098 20 C -0.145 4.145 21 C -0.148 4.148 22 C -0.088 4.088 23 C -0.150 4.150 24 C -0.159 4.159 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.055 0.945 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.280 -0.419 16.172 17.740 hybrid contribution 0.087 0.729 -1.599 1.760 sum 7.368 0.310 14.572 16.332 Atomic orbital electron populations 1.21606 0.97423 0.99121 0.99562 1.19155 0.92563 0.89790 0.87818 1.02621 1.21377 1.31015 1.12155 0.91075 0.92793 1.25747 0.95386 0.95772 1.01980 1.70025 1.37849 1.24235 1.24076 0.85503 0.78868 0.78272 0.78685 1.19946 1.20724 1.19367 1.65210 1.07343 1.51029 1.01993 1.21573 0.88621 0.99360 0.96076 1.21637 0.97818 1.00501 0.95003 0.93637 1.22674 0.93388 1.00245 0.94483 0.89045 1.22879 0.98640 0.95678 0.90967 1.22126 0.98237 0.94046 0.95346 1.22433 0.96208 0.99164 0.96680 1.22180 0.99963 0.97958 0.94711 1.21296 0.95617 0.96779 0.95130 1.22701 0.95869 0.95095 1.01345 1.22268 0.95811 0.97929 0.99861 0.95064 0.95534 0.92155 0.92891 0.94743 0.92002 0.91038 0.95837 0.88850 0.90166 0.91127 0.92541 0.90250 0.89675 0.92834 0.89095 0.94528 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.20 8.88 71.98 0.64 -5.56 16 2 C 0.21 11.62 1.75 44.17 0.08 11.70 16 3 H -0.04 -2.65 8.11 -2.39 -0.02 -2.67 16 4 C -0.52 -29.97 7.64 25.60 0.20 -29.78 16 5 H 0.05 3.13 7.45 -2.91 -0.02 3.11 16 6 C 0.01 0.54 5.30 84.65 0.45 0.99 16 7 N -0.92 -54.90 11.32 21.45 0.24 -54.66 16 8 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 N -0.53 -24.36 5.13 -865.82 -4.44 -28.81 16 13 C 0.07 2.96 6.01 84.38 0.51 3.46 16 14 C -0.13 -4.25 2.29 -12.13 -0.03 -4.28 16 15 H 0.05 1.68 4.37 -2.38 -0.01 1.67 16 16 C -0.09 -2.65 2.55 -9.57 -0.02 -2.68 16 17 H 0.09 2.68 6.50 -2.39 -0.02 2.66 16 18 C 0.05 1.74 4.87 85.73 0.42 2.16 16 19 C -0.08 -1.80 4.16 -9.11 -0.04 -1.84 16 20 C -0.11 -1.91 5.49 32.03 0.18 -1.74 16 21 C -0.11 -2.19 5.37 31.60 0.17 -2.02 16 22 C -0.07 -1.70 4.32 -10.16 -0.04 -1.74 16 23 C -0.11 -2.43 5.60 32.19 0.18 -2.25 16 24 C -0.12 -2.88 5.36 31.59 0.17 -2.71 16 25 H 0.03 1.58 8.14 -2.39 -0.02 1.57 16 26 H 0.03 1.22 7.15 -2.39 -0.02 1.20 16 27 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 28 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 29 H 0.03 1.63 7.03 -2.39 -0.02 1.61 16 30 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.02 0.95 7.51 -2.39 -0.02 0.94 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 1.18 6.87 -2.39 -0.02 1.16 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.24 6.83 -2.38 -0.02 1.22 16 37 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.09 1.52 6.81 -2.39 -0.02 1.50 16 41 H 0.04 1.10 6.07 -2.38 -0.01 1.09 16 42 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -63.33 299.24 1.65 -61.68 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.98 Total: 10.98 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 2.85 Total: -36.28 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -4.20 Total: -83.47 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.33 1.65 -61.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383849691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.942 kcal (2) G-P(sol) polarization free energy of solvation -63.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.60 seconds