Wall clock time and date at job start Mon Mar 30 2020 06:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30661 * 1 3 3 Si 1.86793 * 120.00211 * 2 1 4 4 H 1.48499 * 109.47250 * 269.99759 * 3 2 1 5 5 H 1.48494 * 109.47240 * 29.99809 * 3 2 1 6 6 H 1.48497 * 109.47108 * 149.99918 * 3 2 1 7 7 C 1.40236 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00487 * 346.31522 * 7 2 1 9 9 C 1.40732 * 119.99927 * 166.31253 * 7 2 1 10 10 C 1.40231 * 120.38874 * 326.74277 * 9 7 2 11 11 C 1.39264 * 119.83244 * 179.97438 * 10 9 7 12 12 N 1.35877 * 132.63303 * 179.97438 * 11 10 9 13 13 C 1.30125 * 109.62690 * 179.97438 * 12 11 10 14 14 N 1.35858 * 110.24988 * 0.27003 * 13 12 11 15 15 H 0.97003 * 126.30470 * 179.72550 * 14 13 12 16 16 C 1.38064 * 107.39529 * 359.57116 * 14 13 12 17 17 C 1.38762 * 133.04586 * 180.08816 * 16 14 13 18 18 C 1.39235 * 120.08823 * 180.33568 * 17 16 14 19 19 C 1.46537 * 120.37266 * 179.97438 * 18 17 16 20 20 O 1.21422 * 120.00434 * 174.23837 * 19 18 17 21 21 Cl 1.73604 * 119.99689 * 354.24033 * 19 18 17 22 22 H 0.97006 * 119.99791 * 359.97438 * 1 2 3 23 23 H 1.07996 * 120.08114 * 359.97438 * 10 9 7 24 24 H 1.07997 * 124.87162 * 179.97438 * 13 12 11 25 25 H 1.08001 * 119.95301 * 0.35427 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 2.4882 2.0463 -1.4000 5 1 1.4382 2.6526 0.7000 6 1 3.5381 1.4400 0.7000 7 6 2.0077 -1.2145 -0.0005 8 1 1.4907 -2.1367 0.2203 9 6 3.3850 -1.2318 -0.2889 10 6 3.9310 -0.3143 -1.1981 11 6 5.2956 -0.3414 -1.4745 12 7 6.0843 0.4055 -2.2909 13 6 7.3156 -0.0065 -2.2059 14 7 7.4043 -1.0471 -1.3369 15 1 8.2108 -1.5324 -1.1024 16 6 6.1358 -1.2845 -0.8464 17 6 5.6271 -2.2057 0.0581 18 6 4.2679 -2.2101 0.3600 19 6 3.7239 -3.1805 1.3138 20 8 2.5597 -3.1126 1.6518 21 17 4.7441 -4.4274 1.9605 22 1 -0.4850 0.8401 0.0004 23 1 3.2947 0.4115 -1.6827 24 1 8.1468 0.4149 -2.7516 25 1 6.2864 -2.9200 0.5287 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396082388.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:59 Heat of formation + Delta-G solvation = 21.701664 kcal Electronic energy + Delta-G solvation = -15478.690461 eV Core-core repulsion = 12676.705477 eV Total energy + Delta-G solvation = -2801.984984 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.20081 -38.48722 -36.00037 -35.53749 -33.62696 -32.47448 -30.11625 -29.15593 -25.49214 -23.68318 -21.83906 -20.79036 -19.96769 -17.87670 -17.39430 -16.70625 -15.65175 -15.12838 -14.53583 -14.08121 -14.04820 -13.69304 -13.27924 -13.20241 -12.72845 -11.98526 -11.48421 -11.02486 -10.70949 -10.58335 -10.52104 -10.45560 -10.20702 -9.92621 -9.49702 -9.32219 -9.02845 -7.61651 -7.46890 -7.15378 -4.69722 1.14626 2.38223 2.46440 2.76308 3.08990 3.10689 3.24598 3.53490 3.64530 3.86462 4.29736 4.83924 5.08904 5.27964 5.64409 5.76088 6.16913 6.20814 6.21930 6.61952 6.81593 7.00763 7.27611 7.32936 7.53809 7.90628 7.94235 8.23490 8.27444 8.49968 8.56712 9.81104 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.013623 C = 0.007371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.576446 B = 2054.868215 C = 3797.736515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.081 3.919 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.287 1.287 6 H -0.245 1.245 7 C -0.392 4.392 8 H 0.118 0.882 9 C 0.118 3.882 10 C -0.216 4.216 11 C 0.125 3.875 12 N -0.528 5.528 13 C 0.267 3.733 14 N -0.613 5.613 15 H 0.413 0.587 16 C -0.065 4.065 17 C -0.011 4.011 18 C -0.228 4.228 19 C 0.445 3.555 20 O -0.410 6.410 21 Cl -0.184 7.184 22 H 0.293 0.707 23 H 0.119 0.881 24 H 0.204 0.796 25 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.564 -0.871 -0.910 11.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.185 1.185 5 H -0.214 1.214 6 H -0.168 1.168 7 C -0.419 4.419 8 H 0.135 0.865 9 C 0.112 3.888 10 C -0.238 4.238 11 C 0.011 3.989 12 N -0.251 5.251 13 C -0.021 4.021 14 N -0.229 5.229 15 H 0.250 0.750 16 C -0.169 4.169 17 C -0.032 4.032 18 C -0.233 4.233 19 C 0.299 3.701 20 O -0.285 6.285 21 Cl -0.159 7.159 22 H 0.104 0.896 23 H 0.137 0.863 24 H 0.221 0.779 25 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.302 -0.198 -1.137 10.367 hybrid contribution 1.221 -0.314 0.595 1.394 sum 11.523 -0.512 -0.542 11.547 Atomic orbital electron populations 1.69569 1.08325 1.31179 1.30679 1.26395 0.94961 1.02064 0.90816 0.86253 0.80677 0.78932 0.80112 1.18527 1.21426 1.16769 1.19941 0.91071 0.96719 1.34153 0.86467 1.18144 0.92385 0.88842 0.89414 1.20116 0.91343 1.06738 1.05632 1.18950 0.93815 0.92326 0.93852 1.70548 1.00912 1.28857 1.24793 1.25109 0.96905 0.87688 0.92388 1.42751 1.08613 1.31692 1.39863 0.75013 1.18299 0.85221 1.05658 1.07674 1.19907 0.94042 0.95102 0.94120 1.20059 0.92714 1.04607 1.05889 1.24013 0.85970 0.80024 0.80142 1.90699 1.16267 1.66784 1.54778 1.98443 1.72964 1.58159 1.86326 0.89608 0.86311 0.77920 0.86576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.93 13.92 55.56 0.77 -19.15 15 2 C 0.08 2.07 5.45 -17.30 -0.09 1.97 15 3 Si 0.91 20.60 24.52 -169.99 -4.17 16.44 15 4 H -0.26 -5.77 6.55 56.52 0.37 -5.40 15 5 H -0.29 -6.15 7.11 56.52 0.40 -5.75 15 6 H -0.24 -5.72 6.95 56.52 0.39 -5.32 15 7 C -0.39 -10.40 8.33 -37.89 -0.32 -10.71 15 8 H 0.12 3.35 6.18 -52.49 -0.32 3.02 15 9 C 0.12 2.93 5.22 -104.71 -0.55 2.38 15 10 C -0.22 -5.21 7.22 -38.45 -0.28 -5.49 15 11 C 0.13 2.79 7.17 -84.62 -0.61 2.18 15 12 N -0.53 -10.53 11.28 -12.04 -0.14 -10.67 15 13 C 0.27 3.85 12.95 -89.94 -1.16 2.68 15 14 N -0.61 -8.75 6.22 -11.68 -0.07 -8.82 15 15 H 0.41 4.07 8.96 -40.82 -0.37 3.70 15 16 C -0.07 -1.26 7.26 -83.79 -0.61 -1.87 15 17 C -0.01 -0.20 9.51 -39.02 -0.37 -0.57 15 18 C -0.23 -5.10 6.05 -102.68 -0.62 -5.72 15 19 C 0.44 9.69 7.67 34.08 0.26 9.95 15 20 O -0.41 -10.16 14.55 5.43 0.08 -10.08 15 21 Cl -0.18 -3.26 27.76 -51.86 -1.44 -4.70 15 22 H 0.29 6.73 8.29 -40.82 -0.34 6.40 15 23 H 0.12 2.91 4.72 -52.49 -0.25 2.66 15 24 H 0.20 1.74 8.06 -52.49 -0.42 1.32 15 25 H 0.12 1.88 6.99 -52.49 -0.37 1.52 15 LS Contribution 238.90 15.07 3.60 3.60 Total: -1.00 -29.81 238.90 -6.61 -36.42 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -0.90 Total: 2.15 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -4.35 Total: -5.19 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.56 Total: -38.64 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.17 Total: 16.44 kcal Atomic # 17 Polarization: -3.26 SS G_CDS: -1.44 Total: -4.70 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.81 -6.61 -36.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396082388.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.123 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds