Wall clock time and date at job start Mon Mar 30 2020 06:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30842 * 1 3 3 Si 1.86805 * 119.99648 * 2 1 4 4 H 1.48496 * 109.47107 * 240.00083 * 3 2 1 5 5 H 1.48500 * 109.47206 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46939 * 120.00227 * 3 2 1 7 7 C 1.39953 * 120.00651 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00550 * 197.90761 * 7 2 1 9 9 C 1.41085 * 119.99694 * 17.89681 * 7 2 1 10 10 C 1.40288 * 120.23623 * 24.68099 * 9 7 2 11 11 C 1.39579 * 119.98887 * 180.02562 * 10 9 7 12 12 C 1.47207 * 119.78246 * 180.02562 * 11 10 9 13 13 O 1.21324 * 120.00528 * 359.97438 * 12 11 10 14 14 Cl 1.73607 * 120.00194 * 179.97438 * 12 11 10 15 15 C 1.39804 * 120.43507 * 0.03125 * 11 10 9 16 16 C 1.39590 * 120.18552 * 359.93259 * 15 11 10 17 17 N 1.35952 * 133.25978 * 180.02562 * 16 15 11 18 18 C 1.30079 * 109.42528 * 180.02562 * 17 16 15 19 19 N 1.36084 * 110.01409 * 0.24672 * 18 17 16 20 20 H 0.96993 * 126.26058 * 179.75523 * 19 18 17 21 21 C 1.37115 * 107.47108 * 359.60285 * 19 18 17 22 22 H 0.96999 * 120.00468 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.00601 * 359.97438 * 10 9 7 24 24 H 1.08003 * 119.90812 * 180.02562 * 15 11 10 25 25 H 1.07995 * 124.99332 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6966 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0962 1.6965 1.2125 7 6 2.0083 -1.2120 -0.0005 8 1 3.0491 -1.2347 0.2870 9 6 1.3542 -2.4041 -0.3766 10 6 0.2306 -2.3590 -1.2154 11 6 -0.4129 -3.5416 -1.5837 12 6 -1.5912 -3.4891 -2.4645 13 8 -2.0003 -2.4203 -2.8676 14 17 -2.3956 -4.9565 -2.9268 15 6 0.0541 -4.7756 -1.1215 16 6 1.1714 -4.8353 -0.2869 17 7 1.8391 -5.8615 0.3041 18 6 2.8326 -5.3887 0.9979 19 7 2.8637 -4.0316 0.9018 20 1 3.5040 -3.4408 1.3280 21 6 1.8261 -3.6526 0.0894 22 1 -0.4851 0.8400 0.0004 23 1 -0.1369 -1.4094 -1.5754 24 1 -0.4501 -5.6854 -1.4122 25 1 3.5279 -5.9851 1.5700 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396083491.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:12 Heat of formation + Delta-G solvation = 13.147621 kcal Electronic energy + Delta-G solvation = -15317.739258 eV Core-core repulsion = 12515.383342 eV Total energy + Delta-G solvation = -2802.355915 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08619 -38.74789 -36.09548 -35.76124 -33.90532 -32.04719 -29.81492 -28.36990 -25.68034 -23.74812 -21.95024 -20.61721 -19.84733 -17.72947 -17.26177 -15.99433 -15.89414 -15.11757 -14.85237 -14.50159 -14.12954 -13.59551 -13.16590 -12.77942 -12.13010 -11.79739 -11.41908 -10.96232 -10.92288 -10.82453 -10.50413 -10.48607 -10.47959 -9.87559 -9.66658 -9.26007 -9.16483 -7.59946 -7.26411 -7.04085 -4.59446 1.43861 2.20219 2.27807 2.83409 2.93224 2.94657 3.17063 3.67320 3.73175 3.83340 4.42510 4.95213 5.24714 5.41457 5.76353 6.24188 6.38283 6.54681 6.62124 6.79687 6.83345 7.27815 7.37318 7.58152 7.72463 7.84119 8.09747 8.17215 8.39807 8.47219 8.74486 9.88879 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.009741 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.877133 B = 2873.687913 C = 4405.678120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.456 4.456 8 H 0.078 0.922 9 C 0.119 3.881 10 C -0.128 4.128 11 C -0.123 4.123 12 C 0.459 3.541 13 O -0.426 6.426 14 Cl -0.152 7.152 15 C -0.145 4.145 16 C 0.059 3.941 17 N -0.508 5.508 18 C 0.223 3.777 19 N -0.588 5.588 20 H 0.416 0.584 21 C 0.009 3.991 22 H 0.289 0.711 23 H 0.141 0.859 24 H 0.117 0.883 25 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.578 -2.860 1.030 4.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.484 4.484 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.151 4.151 11 C -0.127 4.127 12 C 0.311 3.689 13 O -0.300 6.300 14 Cl -0.126 7.126 15 C -0.167 4.167 16 C -0.058 4.058 17 N -0.230 5.230 18 C -0.064 4.064 19 N -0.198 5.198 20 H 0.253 0.747 21 C -0.101 4.101 22 H 0.101 0.899 23 H 0.158 0.842 24 H 0.135 0.865 25 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.785 -3.113 0.670 4.231 hybrid contribution 0.814 1.660 0.413 1.894 sum 3.599 -1.453 1.083 4.030 Atomic orbital electron populations 1.69763 1.07623 1.30363 1.31862 1.25921 0.94831 1.01594 0.92296 0.86263 0.80133 0.79807 0.80068 1.18533 1.19928 1.18947 1.19351 0.97891 0.91199 1.39971 0.90343 1.16473 0.92441 0.88621 0.91063 1.21128 0.98012 0.95997 0.99943 1.19113 0.95856 0.95422 1.02294 1.24778 0.82474 0.83569 0.78095 1.90631 1.62318 1.27638 1.49448 1.98463 1.80331 1.43335 1.90479 1.19710 0.97934 0.95780 1.03284 1.18554 0.97903 0.88094 1.01298 1.70379 1.07732 1.31266 1.13648 1.24975 0.98982 0.81333 1.01095 1.42711 1.27093 1.08012 1.41979 0.74709 1.19420 0.93662 0.96899 1.00119 0.89937 0.84179 0.86523 0.78180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.74 10.97 55.55 0.61 -18.13 15 2 C 0.07 1.71 5.13 -17.33 -0.09 1.62 15 3 Si 0.91 17.07 29.60 -169.99 -5.03 12.04 15 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 7 C -0.46 -10.69 9.04 -37.86 -0.34 -11.04 15 8 H 0.08 1.69 7.91 -52.49 -0.42 1.28 15 9 C 0.12 2.88 5.57 -106.85 -0.60 2.29 15 10 C -0.13 -3.18 8.23 -38.31 -0.32 -3.49 15 11 C -0.12 -2.82 5.86 -105.17 -0.62 -3.43 15 12 C 0.46 9.83 7.72 34.37 0.27 10.09 15 13 O -0.43 -9.91 17.11 5.52 0.09 -9.82 15 14 Cl -0.15 -2.73 27.70 -51.86 -1.44 -4.16 15 15 C -0.15 -3.22 9.55 -38.49 -0.37 -3.59 15 16 C 0.06 1.33 7.20 -84.75 -0.61 0.72 15 17 N -0.51 -10.43 11.29 -12.09 -0.14 -10.57 15 18 C 0.22 3.65 12.97 -89.76 -1.16 2.48 15 19 N -0.59 -10.39 6.18 -11.39 -0.07 -10.46 15 20 H 0.42 6.01 8.96 -40.82 -0.37 5.64 15 21 C 0.01 0.20 7.02 -83.53 -0.59 -0.38 15 22 H 0.29 6.44 8.30 -40.82 -0.34 6.11 15 23 H 0.14 3.69 5.70 -52.49 -0.30 3.39 15 24 H 0.12 2.40 6.92 -52.48 -0.36 2.03 15 25 H 0.20 2.12 8.06 -52.49 -0.42 1.70 15 LS Contribution 248.32 15.07 3.74 3.74 Total: -1.00 -27.89 248.32 -7.65 -35.54 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -1.00 Total: 6.55 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -4.42 Total: -4.74 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.40 Total: -39.16 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Atomic # 17 Polarization: -2.73 SS G_CDS: -1.44 Total: -4.16 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -27.89 -7.65 -35.54 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396083491.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.690 kcal (2) G-P(sol) polarization free energy of solvation -27.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds