Wall clock time and date at job start Mon Mar 30 2020 06:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30560 * 1 3 3 Si 1.86801 * 120.00118 * 2 1 4 4 H 1.48501 * 109.46770 * 274.66041 * 3 2 1 5 5 H 1.48494 * 109.47010 * 34.65697 * 3 2 1 6 6 H 1.48499 * 109.47139 * 154.66199 * 3 2 1 7 7 C 1.40418 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00006 * 162.42488 * 7 2 1 9 9 C 1.40350 * 120.00162 * 342.42347 * 7 2 1 10 10 C 1.41187 * 120.46307 * 334.99599 * 9 7 2 11 11 C 1.35724 * 120.63728 * 180.25866 * 10 9 7 12 12 C 1.40418 * 121.31475 * 359.48733 * 11 10 9 13 13 N 1.34986 * 132.77904 * 180.25809 * 12 11 10 14 14 C 1.30313 * 109.78576 * 180.02562 * 13 12 11 15 15 N 1.36034 * 110.03916 * 359.97438 * 14 13 12 16 16 H 0.97002 * 126.41722 * 180.02562 * 15 14 13 17 17 C 1.37560 * 107.17329 * 0.02562 * 15 14 13 18 18 C 1.40003 * 133.82843 * 180.02562 * 17 15 14 19 19 C 1.46371 * 120.70828 * 0.02562 * 18 17 15 20 20 O 1.21444 * 119.99666 * 90.00017 * 19 18 17 21 21 Cl 1.73597 * 120.00369 * 270.00725 * 19 18 17 22 22 H 0.97004 * 119.99816 * 0.02562 * 1 2 3 23 23 H 1.07999 * 119.68243 * 0.02696 * 10 9 7 24 24 H 1.07996 * 119.33906 * 179.77132 * 11 10 9 25 25 H 1.07998 * 124.98116 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2396 1.6177 0.0000 4 1 2.3886 2.1032 -1.3955 5 1 1.4898 2.6222 0.7961 6 1 3.5830 1.4137 0.5992 7 6 2.0077 -1.2161 0.0005 8 1 3.0499 -1.2381 -0.2819 9 6 1.3551 -2.4030 0.3681 10 6 0.2239 -2.3661 1.2122 11 6 -0.4068 -3.5121 1.5741 12 6 0.0346 -4.7639 1.1160 13 7 -0.4082 -6.0228 1.3193 14 6 0.3447 -6.8654 0.6703 15 7 1.3249 -6.1975 0.0043 16 1 2.0146 -6.5918 -0.5523 17 6 1.1550 -4.8581 0.2679 18 6 1.8353 -3.6989 -0.1241 19 6 3.0005 -3.7783 -1.0063 20 8 2.8549 -3.7256 -2.2108 21 17 4.5907 -3.9479 -0.3309 22 1 -0.4850 0.8401 -0.0004 23 1 -0.1408 -1.4170 1.5764 24 1 -1.2679 -3.4598 2.2237 25 1 0.2103 -7.9370 0.6624 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396084543.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:08 Heat of formation + Delta-G solvation = 12.715163 kcal Electronic energy + Delta-G solvation = -15475.073236 eV Core-core repulsion = 12672.698568 eV Total energy + Delta-G solvation = -2802.374668 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.95151 -38.41783 -36.27538 -35.49989 -33.62868 -32.20519 -29.55911 -28.90257 -25.69222 -23.44552 -21.36709 -21.10597 -19.72138 -18.06836 -17.07809 -16.02578 -15.71254 -15.60813 -14.44731 -14.23555 -14.08476 -13.82922 -13.21067 -12.73608 -12.23956 -11.69669 -11.42610 -11.11652 -10.86764 -10.65889 -10.57275 -10.38762 -10.35404 -9.80573 -9.77427 -9.42630 -8.92917 -7.50011 -7.44394 -7.13250 -4.83260 1.91180 2.28635 2.49634 2.76187 2.84311 2.90206 2.99325 3.56697 3.62557 3.80829 4.33232 5.17431 5.24228 5.59975 5.89320 6.28059 6.40448 6.47069 6.51762 6.71985 7.12419 7.26610 7.45232 7.49013 7.61951 7.75607 8.04944 8.23437 8.25787 8.33251 8.88581 9.57130 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.021124 B = 0.009898 C = 0.007261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.171476 B = 2828.244637 C = 3855.516400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.417 4.417 8 H 0.089 0.911 9 C 0.176 3.824 10 C -0.141 4.141 11 C -0.039 4.039 12 C -0.060 4.060 13 N -0.475 5.475 14 C 0.171 3.829 15 N -0.612 5.612 16 H 0.409 0.591 17 C 0.148 3.852 18 C -0.334 4.334 19 C 0.504 3.496 20 O -0.431 6.431 21 Cl -0.181 7.181 22 H 0.295 0.705 23 H 0.134 0.866 24 H 0.105 0.895 25 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 -2.391 1.260 3.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.175 1.175 7 C -0.443 4.443 8 H 0.107 0.893 9 C 0.171 3.829 10 C -0.161 4.161 11 C -0.059 4.059 12 C -0.178 4.178 13 N -0.193 5.193 14 C -0.112 4.112 15 N -0.225 5.225 16 H 0.245 0.755 17 C 0.036 3.964 18 C -0.343 4.343 19 C 0.353 3.647 20 O -0.303 6.303 21 Cl -0.155 7.155 22 H 0.107 0.893 23 H 0.152 0.848 24 H 0.123 0.877 25 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.878 -2.394 1.207 3.274 hybrid contribution 1.555 0.523 -0.812 1.831 sum 3.433 -1.871 0.395 3.930 Atomic orbital electron populations 1.69677 1.08110 1.31169 1.28102 1.26212 0.94934 1.02384 0.91482 0.86078 0.81007 0.78928 0.79912 1.18757 1.19176 1.17511 1.19785 0.98469 0.90990 1.35080 0.89273 1.18112 0.89755 0.88479 0.86533 1.20937 0.97675 0.97220 1.00291 1.19700 0.98359 0.89426 0.98379 1.18366 0.99413 0.91899 1.08116 1.69797 1.27110 1.00186 1.22255 1.24558 0.89879 0.98486 0.98306 1.42828 1.29089 1.05955 1.44602 0.75480 1.18308 0.97598 0.82519 0.97957 1.18724 1.02654 0.92239 1.20683 1.24394 0.82913 0.68868 0.88512 1.90618 1.82881 1.39061 1.17735 1.98476 1.36026 1.93680 1.87341 0.89321 0.84836 0.87723 0.78708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -16.72 10.97 55.57 0.61 -16.11 15 2 C 0.08 1.65 5.14 -17.27 -0.09 1.56 15 3 Si 0.92 16.37 29.60 -169.99 -5.03 11.34 15 4 H -0.26 -4.71 7.11 56.52 0.40 -4.31 15 5 H -0.27 -4.55 7.11 56.52 0.40 -4.15 15 6 H -0.25 -4.49 7.11 56.52 0.40 -4.09 15 7 C -0.42 -9.93 8.57 -37.97 -0.33 -10.26 15 8 H 0.09 2.09 7.39 -52.48 -0.39 1.70 15 9 C 0.18 4.31 5.74 -104.56 -0.60 3.71 15 10 C -0.14 -3.29 8.60 -39.36 -0.34 -3.63 15 11 C -0.04 -0.87 9.96 -39.66 -0.39 -1.27 15 12 C -0.06 -1.39 7.20 -84.68 -0.61 -2.00 15 13 N -0.47 -10.18 11.24 -11.93 -0.13 -10.31 15 14 C 0.17 3.00 12.97 -89.62 -1.16 1.84 15 15 N -0.61 -11.30 6.22 -11.47 -0.07 -11.37 15 16 H 0.41 6.30 8.96 -40.82 -0.37 5.93 15 17 C 0.15 3.34 7.03 -83.65 -0.59 2.75 15 18 C -0.33 -7.92 5.83 -102.55 -0.60 -8.52 15 19 C 0.50 11.31 6.11 34.00 0.21 11.52 15 20 O -0.43 -10.42 17.92 5.41 0.10 -10.32 15 21 Cl -0.18 -3.50 29.18 -51.86 -1.51 -5.01 15 22 H 0.30 5.82 8.29 -40.82 -0.34 5.48 15 23 H 0.13 3.05 6.17 -52.49 -0.32 2.73 15 24 H 0.10 2.13 8.06 -52.49 -0.42 1.71 15 25 H 0.20 2.39 8.06 -52.49 -0.42 1.96 15 LS Contribution 250.54 15.07 3.78 3.78 Total: -1.00 -27.53 250.54 -7.82 -35.35 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -1.06 Total: 6.96 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -4.50 Total: -4.30 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.40 Total: -37.80 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.10 Total: -10.32 kcal Atomic # 14 Polarization: 16.37 SS G_CDS: -5.03 Total: 11.34 kcal Atomic # 17 Polarization: -3.50 SS G_CDS: -1.51 Total: -5.01 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.53 -7.82 -35.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396084543.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.065 kcal (2) G-P(sol) polarization free energy of solvation -27.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds