Wall clock time and date at job start Mon Mar 30 2020 06:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86798 * 120.00217 * 2 1 4 4 H 1.48497 * 109.47422 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47136 * 300.00880 * 3 2 1 6 6 H 1.48505 * 109.46937 * 60.00382 * 3 2 1 7 7 C 1.39860 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99742 * 198.04197 * 7 2 1 9 9 C 1.41411 * 120.00170 * 18.03183 * 7 2 1 10 10 C 1.40470 * 119.90480 * 24.93643 * 9 7 2 11 11 C 1.39059 * 119.95067 * 180.02562 * 10 9 7 12 12 N 1.36054 * 133.28272 * 179.97438 * 11 10 9 13 13 C 1.30034 * 109.44657 * 180.02562 * 12 11 10 14 14 N 1.36200 * 110.11500 * 0.22403 * 13 12 11 15 15 H 0.97001 * 126.25159 * 179.73452 * 14 13 12 16 16 C 1.37201 * 107.49644 * 359.63337 * 14 13 12 17 17 C 1.40818 * 133.72023 * 180.02562 * 16 14 13 18 18 C 1.47028 * 120.10960 * 0.30185 * 17 16 14 19 19 O 1.21348 * 120.00058 * 359.97438 * 18 17 16 20 20 Cl 1.73606 * 120.00090 * 179.97438 * 18 17 16 21 21 C 1.38990 * 119.77959 * 180.31933 * 17 16 14 22 22 H 0.97000 * 120.00104 * 359.97438 * 1 2 3 23 23 H 1.08008 * 120.02365 * 0.02562 * 10 9 7 24 24 H 1.07996 * 124.94013 * 179.97438 * 13 12 11 25 25 H 1.08001 * 119.98650 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2124 6 1 1.8842 2.3964 1.2126 7 6 2.0081 -1.2112 -0.0005 8 1 3.0483 -1.2343 0.2891 9 6 1.3532 -2.4057 -0.3802 10 6 0.2337 -2.3518 -1.2269 11 6 -0.4114 -3.5258 -1.6004 12 7 -1.4906 -3.7876 -2.3864 13 6 -1.6997 -5.0705 -2.4213 14 7 -0.7747 -5.7168 -1.6585 15 1 -0.7159 -6.6746 -1.5172 16 6 0.0599 -4.7657 -1.1283 17 6 1.1818 -4.8197 -0.2789 18 6 1.6718 -6.1153 0.2142 19 8 1.1090 -7.1402 -0.1102 20 17 3.0555 -6.1787 1.2607 21 6 1.8241 -3.6443 0.0920 22 1 -0.4850 0.8400 0.0004 23 1 -0.1257 -1.3993 -1.5877 24 1 -2.4939 -5.5530 -2.9716 25 1 2.6851 -3.6819 0.7430 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396084666.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:29 Heat of formation + Delta-G solvation = 14.800069 kcal Electronic energy + Delta-G solvation = -15302.692847 eV Core-core repulsion = 12500.408587 eV Total energy + Delta-G solvation = -2802.284260 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.18414 -38.81560 -36.47733 -36.00360 -33.48219 -32.17914 -29.63719 -28.86846 -25.35567 -23.92276 -21.82375 -20.78777 -20.19256 -17.65747 -17.20351 -16.25935 -15.84085 -15.04970 -14.87766 -14.80914 -14.08425 -13.86983 -13.18854 -12.84958 -12.13808 -11.54937 -11.26359 -11.08701 -11.06192 -10.96019 -10.67201 -10.41858 -10.19952 -9.97026 -9.84784 -9.29501 -9.12408 -7.54246 -7.34079 -6.86096 -4.47354 1.09668 2.02764 2.33274 2.72151 3.06083 3.09997 3.12304 3.67807 3.72578 3.88261 4.45813 5.01034 5.09284 5.34127 5.61198 6.04058 6.24110 6.41224 6.48593 6.92993 7.06047 7.07503 7.30393 7.50707 7.65746 7.77385 8.10872 8.26101 8.61614 8.68623 8.73288 10.10191 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.020821 B = 0.008460 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.451646 B = 3309.006888 C = 4571.882584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.085 0.915 9 C 0.076 3.924 10 C -0.076 4.076 11 C 0.054 3.946 12 N -0.500 5.500 13 C 0.230 3.770 14 N -0.600 5.600 15 H 0.417 0.583 16 C 0.026 3.974 17 C -0.160 4.160 18 C 0.456 3.544 19 O -0.458 6.458 20 Cl -0.135 7.135 21 C -0.089 4.089 22 H 0.283 0.717 23 H 0.136 0.864 24 H 0.203 0.797 25 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.240 -5.556 -0.687 5.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.491 4.491 8 H 0.103 0.897 9 C 0.072 3.928 10 C -0.098 4.098 11 C -0.062 4.062 12 N -0.221 5.221 13 C -0.058 4.058 14 N -0.215 5.215 15 H 0.255 0.745 16 C -0.084 4.084 17 C -0.165 4.165 18 C 0.312 3.688 19 O -0.336 6.336 20 Cl -0.109 7.109 21 C -0.109 4.109 22 H 0.095 0.905 23 H 0.154 0.846 24 H 0.219 0.781 25 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.404 -5.228 -1.157 5.369 hybrid contribution 0.796 -0.461 0.640 1.120 sum 1.200 -5.688 -0.518 5.837 Atomic orbital electron populations 1.69798 1.07544 1.29583 1.34928 1.25866 0.94741 1.01439 0.92274 0.86229 0.80927 0.80811 0.78629 1.18300 1.19654 1.19997 1.19435 0.98345 0.90636 1.40678 0.89714 1.17277 0.92370 0.91884 0.91278 1.20874 0.96798 0.95230 0.96874 1.19010 0.94912 0.92708 0.99538 1.70483 1.16992 1.13130 1.21502 1.25040 0.95085 0.88983 0.96643 1.42862 1.26509 1.09461 1.42621 0.74456 1.18364 0.96206 0.90043 1.03747 1.18159 0.99933 0.91025 1.07423 1.24712 0.78411 0.90165 0.75490 1.90528 1.52940 1.37745 1.52406 1.98478 1.46732 1.98543 1.67164 1.21625 0.99679 0.90881 0.98726 0.90549 0.84609 0.78060 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.52 10.98 55.54 0.61 -18.91 15 2 C 0.07 1.75 5.12 -17.35 -0.09 1.66 15 3 Si 0.91 17.58 29.60 -169.99 -5.03 12.55 15 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 7 C -0.46 -11.09 9.03 -37.77 -0.34 -11.44 15 8 H 0.08 1.92 7.91 -52.48 -0.41 1.51 15 9 C 0.08 1.85 5.56 -106.93 -0.59 1.25 15 10 C -0.08 -1.90 8.72 -38.44 -0.34 -2.23 15 11 C 0.05 1.27 7.20 -84.72 -0.61 0.66 15 12 N -0.50 -10.87 11.30 -12.06 -0.14 -11.00 15 13 C 0.23 3.92 12.97 -89.69 -1.16 2.76 15 14 N -0.60 -10.80 5.98 -11.38 -0.07 -10.87 15 15 H 0.42 6.52 7.66 -40.82 -0.31 6.21 15 16 C 0.03 0.57 6.89 -83.52 -0.58 -0.01 15 17 C -0.16 -3.36 5.87 -105.08 -0.62 -3.98 15 18 C 0.46 8.64 7.72 34.29 0.26 8.90 15 19 O -0.46 -8.85 16.04 5.50 0.09 -8.76 15 20 Cl -0.14 -2.22 27.73 -51.86 -1.44 -3.66 15 21 C -0.09 -1.93 9.22 -38.38 -0.35 -2.28 15 22 H 0.28 6.38 8.30 -40.82 -0.34 6.04 15 23 H 0.14 3.57 6.16 -52.48 -0.32 3.25 15 24 H 0.20 2.28 8.06 -52.49 -0.42 1.86 15 25 H 0.13 2.47 6.94 -52.49 -0.36 2.10 15 LS Contribution 246.25 15.07 3.71 3.71 Total: -1.00 -27.25 246.25 -7.65 -34.90 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -0.97 Total: 6.74 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -4.41 Total: -4.70 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.41 Total: -40.78 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -1.44 Total: -3.66 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.25 -7.65 -34.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396084666.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.704 kcal (2) G-P(sol) polarization free energy of solvation -27.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds