Wall clock time and date at job start Mon Mar 30 2020 06:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86798 * 120.00217 * 2 1 4 4 H 1.48497 * 109.47422 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47136 * 300.00880 * 3 2 1 6 6 H 1.48505 * 109.46937 * 60.00382 * 3 2 1 7 7 C 1.39860 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99742 * 198.04197 * 7 2 1 9 9 C 1.41411 * 120.00170 * 18.03183 * 7 2 1 10 10 C 1.40470 * 119.90480 * 24.93643 * 9 7 2 11 11 C 1.39059 * 119.95067 * 180.02562 * 10 9 7 12 12 N 1.36054 * 133.28272 * 179.97438 * 11 10 9 13 13 C 1.30034 * 109.44657 * 180.02562 * 12 11 10 14 14 N 1.36200 * 110.11500 * 0.22403 * 13 12 11 15 15 H 0.97001 * 126.25159 * 179.73452 * 14 13 12 16 16 C 1.37201 * 107.49644 * 359.63337 * 14 13 12 17 17 C 1.40818 * 133.72023 * 180.02562 * 16 14 13 18 18 C 1.47028 * 120.10960 * 0.30185 * 17 16 14 19 19 O 1.21348 * 120.00058 * 359.97438 * 18 17 16 20 20 Cl 1.73606 * 120.00090 * 179.97438 * 18 17 16 21 21 C 1.38990 * 119.77959 * 180.31933 * 17 16 14 22 22 H 0.97000 * 120.00104 * 359.97438 * 1 2 3 23 23 H 1.08008 * 120.02365 * 0.02562 * 10 9 7 24 24 H 1.07996 * 124.94013 * 179.97438 * 13 12 11 25 25 H 1.08001 * 119.98650 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2124 6 1 1.8842 2.3964 1.2126 7 6 2.0081 -1.2112 -0.0005 8 1 3.0483 -1.2343 0.2891 9 6 1.3532 -2.4057 -0.3802 10 6 0.2337 -2.3518 -1.2269 11 6 -0.4114 -3.5258 -1.6004 12 7 -1.4906 -3.7876 -2.3864 13 6 -1.6997 -5.0705 -2.4213 14 7 -0.7747 -5.7168 -1.6585 15 1 -0.7159 -6.6746 -1.5172 16 6 0.0599 -4.7657 -1.1283 17 6 1.1818 -4.8197 -0.2789 18 6 1.6718 -6.1153 0.2142 19 8 1.1090 -7.1402 -0.1102 20 17 3.0555 -6.1787 1.2607 21 6 1.8241 -3.6443 0.0920 22 1 -0.4850 0.8400 0.0004 23 1 -0.1257 -1.3993 -1.5877 24 1 -2.4939 -5.5530 -2.9716 25 1 2.6851 -3.6819 0.7430 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396084666.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:29 Heat of formation + Delta-G solvation = -0.686114 kcal Electronic energy + Delta-G solvation = -15303.364378 eV Core-core repulsion = 12500.408587 eV Total energy + Delta-G solvation = -2802.955791 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.76381 -40.35319 -38.16532 -37.47019 -35.21187 -33.77896 -31.34671 -30.53127 -27.09506 -25.55436 -23.35719 -22.48001 -21.76830 -19.36042 -18.77227 -17.86595 -17.45302 -16.70038 -16.42943 -16.39852 -15.63629 -15.48589 -14.83622 -14.39410 -13.79994 -13.23707 -12.85033 -12.72653 -12.55031 -12.46141 -12.24382 -12.02396 -11.84793 -11.57180 -11.46353 -10.97698 -10.78311 -9.25216 -9.03206 -8.60564 -6.29743 -0.51783 0.51609 0.73779 1.07982 1.46722 1.55118 1.61443 2.12382 2.25972 2.28109 2.72111 3.42782 3.56410 3.68988 4.13708 4.40849 4.63281 4.78463 4.83874 5.20604 5.29974 5.41619 5.71338 5.81498 5.90031 5.99307 6.44363 6.72708 6.85145 6.90234 7.15458 8.37662 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.020821 B = 0.008460 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.451646 B = 3309.006888 C = 4571.882584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.251 1.251 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.487 4.487 8 H 0.093 0.907 9 C 0.057 3.943 10 C -0.112 4.112 11 C 0.035 3.965 12 N -0.547 5.547 13 C 0.262 3.738 14 N -0.590 5.590 15 H 0.431 0.569 16 C 0.009 3.991 17 C -0.158 4.158 18 C 0.461 3.539 19 O -0.457 6.457 20 Cl -0.103 7.103 21 C -0.091 4.091 22 H 0.287 0.713 23 H 0.109 0.891 24 H 0.264 0.736 25 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.665 -6.961 -0.584 7.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.174 1.174 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.517 4.517 8 H 0.111 0.889 9 C 0.053 3.947 10 C -0.134 4.134 11 C -0.080 4.080 12 N -0.269 5.269 13 C -0.025 4.025 14 N -0.205 5.205 15 H 0.272 0.728 16 C -0.101 4.101 17 C -0.164 4.164 18 C 0.316 3.684 19 O -0.336 6.336 20 Cl -0.076 7.076 21 C -0.111 4.111 22 H 0.098 0.902 23 H 0.127 0.873 24 H 0.280 0.720 25 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.841 -6.676 -1.043 6.809 hybrid contribution 0.620 -0.214 0.599 0.888 sum 1.460 -6.891 -0.444 7.058 Atomic orbital electron populations 1.69890 1.09139 1.30574 1.35954 1.26711 0.95323 1.04606 0.91365 0.85169 0.79790 0.76360 0.78510 1.17447 1.19653 1.19438 1.19754 0.98853 0.91444 1.41656 0.88932 1.17547 0.92562 0.93143 0.91448 1.20697 0.98630 0.94910 0.99211 1.19161 0.95659 0.93126 1.00052 1.70476 1.17520 1.15784 1.23141 1.26221 0.94433 0.87733 0.94081 1.42889 1.25812 1.09760 1.42074 0.72809 1.18484 0.97005 0.90357 1.04266 1.18361 0.99463 0.91935 1.06616 1.24336 0.79096 0.89196 0.75747 1.90523 1.53230 1.37439 1.52361 1.98485 1.44785 1.98450 1.65909 1.21752 1.00151 0.90349 0.98869 0.90199 0.87296 0.72034 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.55 10.98 21.81 0.24 -42.31 15 2 C 0.03 1.66 5.12 85.23 0.44 2.10 15 3 Si 0.98 36.51 29.60 68.60 2.03 38.54 15 4 H -0.25 -8.92 7.11 99.48 0.71 -8.21 15 5 H -0.27 -10.00 7.11 99.48 0.71 -9.30 15 6 H -0.27 -9.72 7.11 99.48 0.71 -9.01 15 7 C -0.49 -24.08 9.03 23.44 0.21 -23.87 15 8 H 0.09 4.25 7.91 -2.91 -0.02 4.23 15 9 C 0.06 2.86 5.56 -21.36 -0.12 2.74 15 10 C -0.11 -5.89 8.72 23.01 0.20 -5.69 15 11 C 0.04 1.70 7.20 39.31 0.28 1.98 15 12 N -0.55 -23.60 11.30 -192.07 -2.17 -25.77 15 13 C 0.26 8.24 12.97 180.02 2.33 10.57 15 14 N -0.59 -19.86 5.98 -189.91 -1.14 -20.99 15 15 H 0.43 12.11 7.66 -92.71 -0.71 11.40 15 16 C 0.01 0.40 6.89 39.56 0.27 0.67 15 17 C -0.16 -6.53 5.87 -20.16 -0.12 -6.65 15 18 C 0.46 16.49 7.72 70.13 0.54 17.03 15 19 O -0.46 -16.48 16.04 -3.24 -0.05 -16.53 15 20 Cl -0.10 -3.13 27.73 -2.72 -0.08 -3.20 15 21 C -0.09 -3.97 9.22 23.05 0.21 -3.76 15 22 H 0.29 13.48 8.30 -92.71 -0.77 12.71 15 23 H 0.11 6.16 6.16 -2.91 -0.02 6.15 15 24 H 0.26 4.58 8.06 -2.91 -0.02 4.56 15 25 H 0.14 5.52 6.94 -2.91 -0.02 5.50 15 Total: -1.00 -60.78 246.25 3.65 -57.13 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.56 Total: 18.02 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 4.26 Total: -4.87 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -3.07 Total: -89.08 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.05 Total: -16.53 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.54 kcal Atomic # 17 Polarization: -3.13 SS G_CDS: -0.08 Total: -3.20 kcal Total: -60.78 3.65 -57.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396084666.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.445 kcal (2) G-P(sol) polarization free energy of solvation -60.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds