Wall clock time and date at job start Mon Mar 30 2020 06:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86808 * 120.00091 * 2 1 4 4 H 1.48500 * 109.47003 * 240.00139 * 3 2 1 5 5 H 1.48494 * 109.46940 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46987 * 119.99916 * 3 2 1 7 7 C 1.39869 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00358 * 196.49564 * 7 2 1 9 9 C 1.41137 * 119.99692 * 16.77217 * 7 2 1 10 10 C 1.40839 * 120.19412 * 25.60772 * 9 7 2 11 11 C 1.36363 * 119.99179 * 179.97438 * 10 9 7 12 12 C 1.39331 * 120.39508 * 359.97369 * 11 10 9 13 13 O 1.35730 * 119.80723 * 180.02562 * 12 11 10 14 14 C 1.42902 * 116.99768 * 0.02562 * 13 12 11 15 15 F 1.39899 * 109.46989 * 299.99568 * 14 13 12 16 16 F 1.39894 * 109.47213 * 60.00125 * 14 13 12 17 17 C 1.39340 * 120.38618 * 0.04663 * 12 11 10 18 18 F 1.35102 * 119.99945 * 179.97438 * 17 12 11 19 19 C 1.37886 * 119.99783 * 359.69501 * 17 12 11 20 20 F 1.35097 * 120.19647 * 180.29857 * 19 17 12 21 21 H 0.96999 * 119.99729 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.99966 * 359.97438 * 10 9 7 23 23 H 1.08005 * 119.80434 * 180.02562 * 11 10 9 24 24 H 1.09000 * 109.46634 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.0969 1.6964 -1.2125 5 1 1.2782 2.7465 0.0006 6 1 3.0969 1.6964 1.2125 7 6 2.0084 -1.2113 -0.0005 8 1 3.0551 -1.2307 0.2650 9 6 1.3477 -2.4074 -0.3538 10 6 0.2172 -2.3709 -1.1929 11 6 -0.4177 -3.5291 -1.5320 12 6 0.0453 -4.7530 -1.0535 13 8 -0.5954 -5.8985 -1.3990 14 6 -1.7334 -5.7727 -2.2543 15 9 -2.6991 -4.9751 -1.6311 16 9 -1.3466 -5.1798 -3.4609 17 6 1.1621 -4.8078 -0.2220 18 9 1.6040 -5.9988 0.2379 19 6 1.8195 -3.6470 0.1267 20 9 2.9063 -3.6961 0.9278 21 1 -0.4850 0.8401 0.0004 22 1 -0.1468 -1.4256 -1.5677 23 1 -1.2842 -3.4976 -2.1761 24 1 -2.1499 -6.7603 -2.4523 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396096652.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:34 Heat of formation + Delta-G solvation = -223.157527 kcal Electronic energy + Delta-G solvation = -18266.362592 eV Core-core repulsion = 14451.273850 eV Total energy + Delta-G solvation = -3815.088742 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.89983 -48.17572 -47.15482 -46.89947 -38.62095 -36.48126 -33.64910 -29.66478 -29.08588 -26.36935 -24.59108 -21.72243 -21.43894 -18.41317 -18.05471 -17.54609 -17.46035 -16.06342 -15.83208 -15.36292 -15.19164 -15.07835 -13.95560 -13.87127 -13.68119 -13.62774 -13.29777 -13.01834 -12.96393 -12.79436 -12.44410 -11.90143 -11.78205 -11.29957 -10.96091 -10.80789 -10.44189 -10.17102 -9.99459 -9.35565 -7.63450 -7.49093 -7.07622 -4.64212 2.30704 2.34799 2.94329 2.96281 3.00374 3.19095 3.73492 3.88743 4.20452 4.71181 5.01290 5.11302 5.21051 5.82799 5.88447 6.10978 6.45272 6.58433 6.84951 7.12676 7.38124 7.51547 7.67190 7.84841 8.21778 8.44086 8.50131 9.85777 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.026129 B = 0.008102 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.330615 B = 3454.909663 C = 4286.539530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.437 4.437 8 H 0.090 0.910 9 C 0.093 3.907 10 C -0.121 4.121 11 C -0.139 4.139 12 C -0.052 4.052 13 O -0.321 6.321 14 C 0.414 3.586 15 F -0.204 7.204 16 F -0.205 7.205 17 C 0.091 3.909 18 F -0.147 7.147 19 C -0.046 4.046 20 F -0.146 7.146 21 H 0.289 0.711 22 H 0.137 0.863 23 H 0.118 0.882 24 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 -3.802 -4.048 6.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.147 4.147 3 Si 0.744 3.256 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.465 4.465 8 H 0.108 0.892 9 C 0.089 3.911 10 C -0.140 4.140 11 C -0.158 4.158 12 C -0.095 4.095 13 O -0.240 6.240 14 C 0.322 3.678 15 F -0.186 7.186 16 F -0.187 7.187 17 C 0.071 3.929 18 F -0.126 7.126 19 C -0.067 4.067 20 F -0.125 7.125 21 H 0.100 0.900 22 H 0.155 0.845 23 H 0.136 0.864 24 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.544 -3.824 -3.935 6.532 hybrid contribution 0.297 0.715 0.121 0.784 sum -3.247 -3.109 -3.815 5.895 Atomic orbital electron populations 1.69805 1.07735 1.30382 1.32383 1.26017 0.94904 1.01902 0.91837 0.86138 0.80051 0.78971 0.80449 1.18391 1.19965 1.18561 1.19522 0.98230 0.90480 1.38292 0.89237 1.17500 0.92479 0.90417 0.90708 1.20838 0.97325 0.97208 0.98669 1.20771 1.01181 0.91458 1.02417 1.17921 0.98346 0.84815 1.08389 1.86372 1.41426 1.31687 1.64527 1.23102 0.78724 0.91451 0.74476 1.93073 1.64580 1.77990 1.82958 1.93061 1.91283 1.86997 1.47402 1.16529 0.95652 0.79819 1.00947 1.91365 1.89054 1.44463 1.87720 1.17283 0.92495 0.92805 1.04163 1.91310 1.52169 1.97089 1.71932 0.89983 0.84502 0.86419 0.81497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.68 10.96 55.54 0.61 -18.07 14 2 C 0.07 1.73 5.15 -17.34 -0.09 1.64 14 3 Si 0.92 17.50 29.59 -169.99 -5.03 12.47 14 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 14 5 H -0.27 -5.04 7.11 56.52 0.40 -4.64 14 6 H -0.26 -4.97 7.11 56.52 0.40 -4.56 14 7 C -0.44 -11.16 8.76 -37.87 -0.33 -11.49 14 8 H 0.09 2.23 7.74 -52.49 -0.41 1.83 14 9 C 0.09 2.42 5.57 -106.74 -0.59 1.82 14 10 C -0.12 -2.98 8.62 -39.27 -0.34 -3.32 14 11 C -0.14 -3.19 8.17 -39.85 -0.33 -3.51 14 12 C -0.05 -1.19 6.51 -38.77 -0.25 -1.45 14 13 O -0.32 -6.39 10.28 -18.90 -0.19 -6.58 14 14 C 0.41 6.25 5.98 101.05 0.60 6.85 14 15 F -0.20 -3.42 15.56 2.25 0.04 -3.39 14 16 F -0.21 -3.36 15.56 2.25 0.04 -3.32 14 17 C 0.09 2.25 7.31 -39.30 -0.29 1.96 14 18 F -0.15 -3.52 17.02 2.25 0.04 -3.48 14 19 C -0.05 -1.19 7.31 -38.64 -0.28 -1.47 14 20 F -0.15 -3.75 16.64 2.25 0.04 -3.71 14 21 H 0.29 6.23 8.30 -40.82 -0.34 5.89 14 22 H 0.14 3.36 6.19 -52.49 -0.32 3.04 14 23 H 0.12 2.47 5.05 -52.48 -0.26 2.20 14 24 H 0.17 1.53 8.14 -51.93 -0.42 1.10 14 LS Contribution 235.71 15.07 3.55 3.55 Total: -1.00 -27.74 235.71 -3.37 -31.11 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -0.55 Total: 0.37 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.90 Total: -8.96 kcal Atomic # 7 Polarization: -18.68 SS G_CDS: 0.61 Total: -18.07 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.19 Total: -6.58 kcal Atomic # 9 Polarization: -14.04 SS G_CDS: 0.15 Total: -13.90 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -27.74 -3.37 -31.11 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396096652.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.051 kcal (2) G-P(sol) polarization free energy of solvation -27.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds