Wall clock time and date at job start Mon Mar 30 2020 06:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86808 * 120.00091 * 2 1 4 4 H 1.48500 * 109.47003 * 240.00139 * 3 2 1 5 5 H 1.48494 * 109.46940 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46987 * 119.99916 * 3 2 1 7 7 C 1.39869 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00358 * 196.49564 * 7 2 1 9 9 C 1.41137 * 119.99692 * 16.77217 * 7 2 1 10 10 C 1.40839 * 120.19412 * 25.60772 * 9 7 2 11 11 C 1.36363 * 119.99179 * 179.97438 * 10 9 7 12 12 C 1.39331 * 120.39508 * 359.97369 * 11 10 9 13 13 O 1.35730 * 119.80723 * 180.02562 * 12 11 10 14 14 C 1.42902 * 116.99768 * 0.02562 * 13 12 11 15 15 F 1.39899 * 109.46989 * 299.99568 * 14 13 12 16 16 F 1.39894 * 109.47213 * 60.00125 * 14 13 12 17 17 C 1.39340 * 120.38618 * 0.04663 * 12 11 10 18 18 F 1.35102 * 119.99945 * 179.97438 * 17 12 11 19 19 C 1.37886 * 119.99783 * 359.69501 * 17 12 11 20 20 F 1.35097 * 120.19647 * 180.29857 * 19 17 12 21 21 H 0.96999 * 119.99729 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.99966 * 359.97438 * 10 9 7 23 23 H 1.08005 * 119.80434 * 180.02562 * 11 10 9 24 24 H 1.09000 * 109.46634 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.0969 1.6964 -1.2125 5 1 1.2782 2.7465 0.0006 6 1 3.0969 1.6964 1.2125 7 6 2.0084 -1.2113 -0.0005 8 1 3.0551 -1.2307 0.2650 9 6 1.3477 -2.4074 -0.3538 10 6 0.2172 -2.3709 -1.1929 11 6 -0.4177 -3.5291 -1.5320 12 6 0.0453 -4.7530 -1.0535 13 8 -0.5954 -5.8985 -1.3990 14 6 -1.7334 -5.7727 -2.2543 15 9 -2.6991 -4.9751 -1.6311 16 9 -1.3466 -5.1798 -3.4609 17 6 1.1621 -4.8078 -0.2220 18 9 1.6040 -5.9988 0.2379 19 6 1.8195 -3.6470 0.1267 20 9 2.9063 -3.6961 0.9278 21 1 -0.4850 0.8401 0.0004 22 1 -0.1468 -1.4256 -1.5677 23 1 -1.2842 -3.4976 -2.1761 24 1 -2.1499 -6.7603 -2.4523 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396096652.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:34 Heat of formation + Delta-G solvation = -239.132343 kcal Electronic energy + Delta-G solvation = -18267.055312 eV Core-core repulsion = 14451.273850 eV Total energy + Delta-G solvation = -3815.781462 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -50.17584 -50.10093 -49.12114 -48.17639 -40.33092 -38.23820 -35.46334 -31.51153 -30.97719 -27.96922 -26.17215 -23.60108 -23.20675 -20.00243 -19.82937 -19.09483 -18.76321 -17.83308 -17.63315 -17.16372 -17.04580 -16.80015 -15.68318 -15.63522 -15.33967 -15.20891 -14.89080 -14.64458 -14.45436 -14.37691 -14.06190 -13.67857 -13.26968 -12.86739 -12.74978 -12.40296 -12.26742 -11.96810 -11.75717 -11.11300 -9.55809 -9.36821 -8.86082 -6.55609 0.39913 0.47277 1.38862 1.46739 1.52675 1.80300 2.15494 2.39815 2.66285 3.18280 3.29565 3.64847 3.83030 3.90819 4.05511 4.31034 4.57948 4.71912 5.02624 5.26518 5.49485 5.62563 5.76821 6.03951 6.31163 6.56045 6.61017 8.10667 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.026129 B = 0.008102 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.330615 B = 3454.909663 C = 4286.539530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.040 3.960 3 Si 0.993 3.007 4 H -0.256 1.256 5 H -0.259 1.259 6 H -0.261 1.261 7 C -0.469 4.469 8 H 0.083 0.917 9 C 0.070 3.930 10 C -0.129 4.129 11 C -0.135 4.135 12 C -0.040 4.040 13 O -0.331 6.331 14 C 0.406 3.594 15 F -0.214 7.214 16 F -0.212 7.212 17 C 0.076 3.924 18 F -0.145 7.145 19 C -0.076 4.076 20 F -0.153 7.153 21 H 0.301 0.699 22 H 0.135 0.865 23 H 0.139 0.861 24 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.306 -3.491 -4.802 7.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.179 4.179 3 Si 0.812 3.188 4 H -0.180 1.180 5 H -0.182 1.182 6 H -0.185 1.185 7 C -0.497 4.497 8 H 0.101 0.899 9 C 0.066 3.934 10 C -0.149 4.149 11 C -0.154 4.154 12 C -0.084 4.084 13 O -0.250 6.250 14 C 0.317 3.683 15 F -0.196 7.196 16 F -0.194 7.194 17 C 0.055 3.945 18 F -0.124 7.124 19 C -0.097 4.097 20 F -0.132 7.132 21 H 0.112 0.888 22 H 0.153 0.847 23 H 0.156 0.844 24 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -4.447 -3.538 -4.697 7.373 hybrid contribution 0.465 0.535 0.316 0.776 sum -3.983 -3.003 -4.381 6.638 Atomic orbital electron populations 1.69805 1.08954 1.32085 1.31716 1.26851 0.95671 1.04680 0.90652 0.85074 0.78807 0.74586 0.80344 1.17967 1.18244 1.18544 1.19748 0.98312 0.91667 1.39935 0.89872 1.17806 0.93332 0.90834 0.91432 1.20882 0.97352 0.97809 0.98821 1.20963 1.01365 0.90899 1.02144 1.17953 0.97593 0.85955 1.06869 1.86381 1.42874 1.30234 1.65466 1.24253 0.77006 0.93996 0.73028 1.93054 1.64651 1.78676 1.83178 1.93046 1.91306 1.87427 1.47641 1.16690 0.96433 0.79610 1.01735 1.91354 1.89138 1.44165 1.87778 1.17526 0.93217 0.93593 1.05358 1.91269 1.52524 1.97166 1.72218 0.88758 0.84711 0.84391 0.74628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.08 10.96 21.82 0.24 -37.85 14 2 C 0.04 1.87 5.15 85.23 0.44 2.30 14 3 Si 0.99 35.08 29.59 68.60 2.03 37.11 14 4 H -0.26 -8.83 7.11 99.48 0.71 -8.12 14 5 H -0.26 -8.40 7.11 99.48 0.71 -7.70 14 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 14 7 C -0.47 -24.41 8.76 23.38 0.20 -24.20 14 8 H 0.08 4.28 7.74 -2.91 -0.02 4.26 14 9 C 0.07 3.71 5.57 -21.24 -0.12 3.60 14 10 C -0.13 -6.41 8.62 22.47 0.19 -6.21 14 11 C -0.13 -6.07 8.17 22.10 0.18 -5.89 14 12 C -0.04 -1.81 6.51 22.80 0.15 -1.66 14 13 O -0.33 -12.41 10.28 -90.53 -0.93 -13.34 14 14 C 0.41 10.92 5.98 113.37 0.68 11.60 14 15 F -0.21 -6.59 15.56 44.97 0.70 -5.89 14 16 F -0.21 -6.35 15.56 44.97 0.70 -5.65 14 17 C 0.08 3.78 7.31 22.45 0.16 3.94 14 18 F -0.15 -6.96 17.02 44.97 0.77 -6.20 14 19 C -0.08 -4.02 7.31 22.88 0.17 -3.85 14 20 F -0.15 -8.09 16.64 44.97 0.75 -7.34 14 21 H 0.30 12.64 8.30 -92.71 -0.77 11.87 14 22 H 0.14 6.65 6.19 -2.91 -0.02 6.63 14 23 H 0.14 5.56 5.05 -2.91 -0.01 5.55 14 24 H 0.24 3.06 8.14 -2.39 -0.02 3.04 14 Total: -1.00 -60.06 235.71 7.59 -52.48 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 1.28 Total: 7.06 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 2.06 Total: -20.39 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.24 Total: -37.85 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.93 Total: -13.34 kcal Atomic # 9 Polarization: -27.99 SS G_CDS: 2.91 Total: -25.08 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 2.03 Total: 37.11 kcal Total: -60.06 7.59 -52.48 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396096652.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.653 kcal (2) G-P(sol) polarization free energy of solvation -60.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds