Wall clock time and date at job start Mon Mar 30 2020 06:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86807 * 119.99925 * 2 1 4 4 H 1.48495 * 109.47138 * 275.41925 * 3 2 1 5 5 H 1.48497 * 109.47115 * 35.41996 * 3 2 1 6 6 H 1.48498 * 109.46757 * 155.41999 * 3 2 1 7 7 C 1.39911 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00204 * 341.72096 * 7 2 1 9 9 C 1.41304 * 120.00222 * 161.72118 * 7 2 1 10 10 C 1.40700 * 120.22351 * 330.30809 * 9 7 2 11 11 C 1.37989 * 119.76896 * 180.27045 * 10 9 7 12 12 O 1.35932 * 119.88395 * 179.73293 * 11 10 9 13 13 C 1.42901 * 116.99853 * 179.72685 * 12 11 10 14 14 F 1.39901 * 109.47019 * 299.99658 * 13 12 11 15 15 F 1.39895 * 109.47273 * 59.99676 * 13 12 11 16 16 C 1.39213 * 120.23047 * 359.45420 * 11 10 9 17 17 C 1.38587 * 120.46009 * 0.29937 * 16 11 10 18 18 F 1.35100 * 119.88549 * 179.97438 * 17 16 11 19 19 C 1.38212 * 120.22443 * 359.97438 * 17 16 11 20 20 F 1.35094 * 120.11640 * 180.02562 * 19 17 16 21 21 H 0.97007 * 119.99802 * 359.97438 * 1 2 3 22 22 H 1.08010 * 120.11545 * 359.97438 * 10 9 7 23 23 H 1.09005 * 109.46775 * 180.02562 * 13 12 11 24 24 H 1.08002 * 119.77002 * 180.27864 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3755 2.1126 -1.3938 5 1 1.5019 2.6169 0.8114 6 1 3.5926 1.4098 0.5824 7 6 2.0081 -1.2117 -0.0005 8 1 1.5089 -2.1235 0.2924 9 6 3.3676 -1.2424 -0.3844 10 6 3.8625 -0.3092 -1.3138 11 6 5.1905 -0.3513 -1.6861 12 8 5.6698 0.5458 -2.5880 13 6 7.0552 0.4500 -2.9247 14 9 7.8285 0.6259 -1.7722 15 9 7.3158 -0.8103 -3.4732 16 6 6.0424 -1.3056 -1.1371 17 6 5.5664 -2.2262 -0.2170 18 9 6.4033 -3.1476 0.3081 19 6 4.2383 -2.2047 0.1652 20 9 3.7767 -3.1028 1.0626 21 1 -0.4850 0.8401 0.0004 22 1 3.2040 0.4346 -1.7379 23 1 7.3066 1.2222 -3.6518 24 1 7.0816 -1.3290 -1.4305 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396123294.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:36 Heat of formation + Delta-G solvation = -224.112144 kcal Electronic energy + Delta-G solvation = -18359.883124 eV Core-core repulsion = 14544.752986 eV Total energy + Delta-G solvation = -3815.130137 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.08382 -48.37659 -47.27051 -47.08062 -39.06026 -36.50407 -33.79109 -30.61125 -29.01070 -25.89764 -25.38856 -22.18496 -21.29529 -18.86674 -18.17367 -17.64735 -17.28699 -16.59988 -15.97586 -15.72742 -15.23190 -14.84852 -14.40042 -14.09785 -13.84617 -13.73781 -13.54675 -13.34819 -13.16153 -12.90699 -12.70509 -12.17288 -11.67879 -11.64648 -11.25718 -10.93132 -10.32846 -10.16126 -10.02353 -9.41561 -8.02679 -7.45724 -7.29358 -4.88189 2.06256 2.08223 2.94406 2.96868 3.04407 3.15161 3.70727 3.75978 4.01162 4.51539 4.79976 4.92677 5.00282 5.39957 5.83259 5.92687 6.03130 6.48397 6.73833 6.76433 6.97396 7.24093 7.35878 7.73406 7.99300 8.18419 8.36644 9.69736 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.021489 B = 0.010449 C = 0.007672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.650573 B = 2679.097226 C = 3648.702511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.084 3.916 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.240 1.240 7 C -0.413 4.413 8 H 0.105 0.895 9 C 0.103 3.897 10 C -0.247 4.247 11 C 0.160 3.840 12 O -0.324 6.324 13 C 0.411 3.589 14 F -0.201 7.201 15 F -0.201 7.201 16 C -0.332 4.332 17 C 0.136 3.864 18 F -0.147 7.147 19 C -0.060 4.060 20 F -0.145 7.145 21 H 0.294 0.706 22 H 0.125 0.875 23 H 0.173 0.827 24 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.460 4.417 -4.859 10.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.139 4.139 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.163 1.163 7 C -0.439 4.439 8 H 0.123 0.877 9 C 0.099 3.901 10 C -0.266 4.266 11 C 0.118 3.882 12 O -0.241 6.241 13 C 0.321 3.679 14 F -0.183 7.183 15 F -0.183 7.183 16 C -0.352 4.352 17 C 0.115 3.885 18 F -0.125 7.125 19 C -0.081 4.081 20 F -0.124 7.124 21 H 0.105 0.895 22 H 0.142 0.858 23 H 0.190 0.810 24 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.084 4.546 -4.857 10.469 hybrid contribution 0.574 0.158 0.271 0.654 sum 8.658 4.704 -4.587 10.868 Atomic orbital electron populations 1.69671 1.08241 1.31289 1.30742 1.26276 0.94908 1.02140 0.90573 0.86267 0.81512 0.78948 0.79628 1.18691 1.21017 1.16290 1.19500 0.92061 0.96966 1.35352 0.87745 1.17170 0.92962 0.89595 0.90411 1.20115 0.92480 1.07556 1.06497 1.18194 0.92830 0.88297 0.88915 1.86572 1.23940 1.54353 1.59278 1.23205 0.77623 0.84086 0.83032 1.93081 1.75979 1.95270 1.53999 1.93079 1.93672 1.45978 1.85544 1.20384 1.00484 1.04185 1.10189 1.17067 0.86199 0.89277 0.95925 1.91397 1.71309 1.64467 1.85367 1.17569 0.90623 0.99402 1.00487 1.91333 1.89268 1.65978 1.65806 0.89537 0.85753 0.81014 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.20 13.93 55.55 0.77 -18.43 14 2 C 0.08 2.07 5.40 -17.34 -0.09 1.98 14 3 Si 0.91 19.39 24.51 -169.99 -4.17 15.23 14 4 H -0.26 -5.32 6.70 56.52 0.38 -4.94 14 5 H -0.28 -5.74 7.11 56.52 0.40 -5.33 14 6 H -0.24 -5.31 6.86 56.52 0.39 -4.93 14 7 C -0.41 -10.74 9.25 -37.79 -0.35 -11.09 14 8 H 0.10 2.87 7.97 -52.49 -0.42 2.45 14 9 C 0.10 2.59 5.11 -106.78 -0.55 2.04 14 10 C -0.25 -5.76 7.10 -38.74 -0.27 -6.04 14 11 C 0.16 3.48 6.47 -39.31 -0.25 3.22 14 12 O -0.32 -5.86 10.42 -19.53 -0.20 -6.07 14 13 C 0.41 5.63 5.98 101.05 0.60 6.24 14 14 F -0.20 -3.10 15.57 2.25 0.04 -3.06 14 15 F -0.20 -3.06 15.57 2.25 0.04 -3.03 14 16 C -0.33 -7.23 8.24 -39.09 -0.32 -7.55 14 17 C 0.14 3.17 7.29 -39.46 -0.29 2.88 14 18 F -0.15 -3.28 17.17 2.25 0.04 -3.24 14 19 C -0.06 -1.49 7.31 -38.57 -0.28 -1.77 14 20 F -0.14 -3.64 16.68 2.25 0.04 -3.60 14 21 H 0.29 6.45 8.30 -40.82 -0.34 6.11 14 22 H 0.12 2.82 4.72 -52.48 -0.25 2.57 14 23 H 0.17 1.31 8.14 -51.93 -0.42 0.89 14 24 H 0.13 2.57 5.06 -52.49 -0.27 2.30 14 LS Contribution 230.86 15.07 3.48 3.48 Total: -1.00 -27.39 230.86 -2.30 -29.69 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -0.52 Total: -0.88 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -1.81 Total: -10.09 kcal Atomic # 7 Polarization: -19.20 SS G_CDS: 0.77 Total: -18.43 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.20 Total: -6.07 kcal Atomic # 9 Polarization: -13.08 SS G_CDS: 0.15 Total: -12.93 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.17 Total: 15.23 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -27.39 -2.30 -29.69 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396123294.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.423 kcal (2) G-P(sol) polarization free energy of solvation -27.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds