Wall clock time and date at job start Mon Mar 30 2020 06:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30894 * 1 3 3 Si 1.86798 * 119.99627 * 2 1 4 4 H 1.48507 * 109.47026 * 240.00342 * 3 2 1 5 5 H 1.48498 * 109.47475 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46976 * 120.00440 * 3 2 1 7 7 C 1.39916 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99770 * 199.87373 * 7 2 1 9 9 C 1.41091 * 120.00433 * 19.87144 * 7 2 1 10 10 C 1.40958 * 120.28823 * 36.53587 * 9 7 2 11 11 F 1.35100 * 120.13814 * 0.02562 * 10 9 7 12 12 C 1.37961 * 119.72277 * 180.25442 * 10 9 7 13 13 F 1.35099 * 119.83420 * 179.76655 * 12 10 9 14 14 C 1.38877 * 120.33140 * 359.79445 * 12 10 9 15 15 C 1.38387 * 120.60106 * 359.97310 * 14 12 10 16 16 C 1.38308 * 120.26203 * 0.02562 * 15 14 12 17 17 O 1.35694 * 120.16605 * 179.97438 * 16 15 14 18 18 C 1.42895 * 117.00555 * 359.97438 * 17 16 15 19 19 F 1.39904 * 109.47390 * 59.99766 * 18 17 16 20 20 F 1.39904 * 109.46790 * 300.00111 * 18 17 16 21 21 H 0.97000 * 120.00115 * 359.97438 * 1 2 3 22 22 H 1.07994 * 119.70131 * 179.97438 * 14 12 10 23 23 H 1.07994 * 119.86970 * 179.97438 * 15 14 12 24 24 H 1.08997 * 109.47753 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6965 -1.2126 5 1 1.2778 2.7465 0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0085 -1.2117 -0.0005 8 1 3.0403 -1.2396 0.3174 9 6 1.3662 -2.3971 -0.4164 10 6 0.4340 -2.3673 -1.4733 11 9 0.1506 -1.2020 -2.0952 12 6 -0.1911 -3.5325 -1.8670 13 9 -1.0884 -3.5057 -2.8766 14 6 0.0968 -4.7326 -1.2302 15 6 1.0132 -4.7782 -0.1942 16 6 1.6545 -3.6250 0.2204 17 8 2.5523 -3.6719 1.2368 18 6 2.7881 -4.9475 1.8359 19 9 3.2694 -5.8356 0.8680 20 9 1.5920 -5.4411 2.3679 21 1 -0.4850 0.8400 0.0004 22 1 -0.3988 -5.6385 -1.5463 23 1 1.2279 -5.7178 0.2930 24 1 3.5244 -4.8442 2.6329 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396124066.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:16 Heat of formation + Delta-G solvation = -232.883605 kcal Electronic energy + Delta-G solvation = -18513.179504 eV Core-core repulsion = 14697.669007 eV Total energy + Delta-G solvation = -3815.510497 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.12175 -49.99954 -48.92535 -48.12200 -40.36016 -37.63521 -35.61564 -31.98059 -30.31225 -27.59501 -26.58619 -23.60623 -22.95387 -19.93314 -19.66049 -19.13337 -18.68972 -17.99614 -17.45806 -16.98532 -16.76725 -16.61826 -15.77349 -15.47340 -15.21306 -15.10922 -14.73791 -14.63687 -14.44581 -14.42022 -13.92691 -13.55364 -13.15301 -12.96758 -12.87407 -12.37581 -12.26615 -11.94261 -11.65490 -11.03328 -9.49867 -9.10351 -8.79886 -6.52990 0.40993 0.54328 1.37216 1.46688 1.51365 1.97265 2.17266 2.48980 2.71070 3.14226 3.41897 3.71162 3.88103 3.90313 4.09903 4.31508 4.59804 4.87616 5.09763 5.29321 5.32171 5.44509 5.94537 6.05188 6.31537 6.63068 6.73072 8.20838 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.019961 B = 0.010687 C = 0.007499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.415230 B = 2619.318817 C = 3733.094001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.248 1.248 7 C -0.474 4.474 8 H 0.097 0.903 9 C 0.068 3.932 10 C -0.017 4.017 11 F -0.142 7.142 12 C 0.052 3.948 13 F -0.154 7.154 14 C -0.209 4.209 15 C -0.143 4.143 16 C 0.014 3.986 17 O -0.320 6.320 18 C 0.402 3.598 19 F -0.212 7.212 20 F -0.214 7.214 21 H 0.293 0.707 22 H 0.151 0.849 23 H 0.145 0.855 24 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.228 -5.436 4.070 8.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.172 1.172 7 C -0.502 4.502 8 H 0.115 0.885 9 C 0.065 3.935 10 C -0.038 4.038 11 F -0.121 7.121 12 C 0.032 3.968 13 F -0.133 7.133 14 C -0.228 4.228 15 C -0.162 4.162 16 C -0.030 4.030 17 O -0.237 6.237 18 C 0.312 3.688 19 F -0.194 7.194 20 F -0.196 7.196 21 H 0.104 0.896 22 H 0.169 0.831 23 H 0.162 0.838 24 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 5.045 -5.128 4.099 8.280 hybrid contribution -0.479 0.595 -0.512 0.920 sum 4.566 -4.534 3.587 7.367 Atomic orbital electron populations 1.69827 1.09516 1.31647 1.32233 1.26811 0.95366 1.04930 0.91315 0.85167 0.78776 0.75024 0.80419 1.18597 1.19421 1.17198 1.19517 0.99670 0.91440 1.39559 0.88538 1.16978 0.92906 0.92891 0.90771 1.17651 1.07182 0.80182 0.98818 1.91297 1.92744 1.47239 1.80834 1.17759 0.93503 0.94786 0.90737 1.91351 1.66029 1.97447 1.58472 1.20337 1.05450 0.95736 1.01327 1.21076 0.98992 0.96880 0.99251 1.18747 0.97433 0.94351 0.92471 1.86477 1.58470 1.31248 1.47550 1.24258 0.83737 0.74260 0.86537 1.93040 1.87973 1.70674 1.67719 1.93040 1.51936 1.88309 1.86340 0.89645 0.83127 0.83791 0.75266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.46 11.11 21.83 0.24 -43.22 14 2 C 0.03 1.70 4.51 85.24 0.38 2.09 14 3 Si 0.99 38.26 29.60 68.60 2.03 40.29 14 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 14 5 H -0.27 -10.02 7.11 99.48 0.71 -9.32 14 6 H -0.25 -8.93 7.11 99.48 0.71 -8.23 14 7 C -0.47 -25.07 8.49 23.38 0.20 -24.87 14 8 H 0.10 4.83 7.88 -2.91 -0.02 4.81 14 9 C 0.07 3.66 5.41 -21.16 -0.11 3.55 14 10 C -0.02 -0.91 6.68 22.87 0.15 -0.75 14 11 F -0.14 -8.14 14.16 44.97 0.64 -7.50 14 12 C 0.05 2.57 7.29 22.36 0.16 2.74 14 13 F -0.15 -7.34 17.17 44.97 0.77 -6.56 14 14 C -0.21 -8.92 10.01 22.46 0.22 -8.70 14 15 C -0.14 -6.02 8.25 22.32 0.18 -5.83 14 16 C 0.01 0.64 6.51 23.04 0.15 0.79 14 17 O -0.32 -12.75 9.85 -90.13 -0.89 -13.64 14 18 C 0.40 11.10 5.98 113.37 0.68 11.78 14 19 F -0.21 -6.22 15.58 44.97 0.70 -5.52 14 20 F -0.21 -6.55 15.58 44.97 0.70 -5.85 14 21 H 0.29 14.39 8.30 -92.71 -0.77 13.62 14 22 H 0.15 5.34 8.06 -2.91 -0.02 5.32 14 23 H 0.14 5.24 5.08 -2.91 -0.01 5.23 14 24 H 0.23 3.40 8.14 -2.39 -0.02 3.38 14 Total: -1.00 -63.24 234.97 7.49 -55.75 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.27 Total: 5.46 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 2.02 Total: -19.21 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.24 Total: -43.22 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.89 Total: -13.64 kcal Atomic # 9 Polarization: -28.24 SS G_CDS: 2.81 Total: -25.43 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -63.24 7.49 -55.75 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396124066.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.131 kcal (2) G-P(sol) polarization free energy of solvation -63.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds