Wall clock time and date at job start Mon Mar 30 2020 06:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86801 * 120.00013 * 2 1 4 4 H 1.48496 * 109.47240 * 270.00109 * 3 2 1 5 5 H 1.48499 * 109.46825 * 30.00325 * 3 2 1 6 6 H 1.48504 * 109.46831 * 149.99915 * 3 2 1 7 7 C 1.39922 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00109 * 160.42388 * 7 2 1 9 9 C 1.41215 * 119.99776 * 340.69996 * 7 2 1 10 10 C 1.41053 * 120.25731 * 322.77313 * 9 7 2 11 11 F 1.35099 * 120.09511 * 359.97318 * 10 9 7 12 12 C 1.37831 * 119.80338 * 179.71849 * 10 9 7 13 13 C 1.38587 * 120.32992 * 0.53917 * 12 10 9 14 14 C 1.38959 * 120.52352 * 359.75346 * 13 12 10 15 15 O 1.36003 * 119.90855 * 179.97438 * 14 13 12 16 16 C 1.42903 * 117.00282 * 359.97438 * 15 14 13 17 17 F 1.39899 * 109.46951 * 300.00806 * 16 15 14 18 18 F 1.39902 * 109.46626 * 59.99751 * 16 15 14 19 19 C 1.38336 * 120.18639 * 359.96398 * 14 13 12 20 20 F 1.35107 * 120.16740 * 180.02562 * 19 14 13 21 21 H 0.97000 * 120.00475 * 0.02562 * 1 2 3 22 22 H 1.08004 * 119.83570 * 180.27586 * 12 10 9 23 23 H 1.08003 * 119.73580 * 179.74401 * 13 12 10 24 24 H 1.08992 * 109.47735 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0464 -1.4000 5 1 1.4402 2.6526 0.7001 6 1 3.5403 1.4401 0.7001 7 6 2.0083 -1.2118 -0.0005 8 1 3.0415 -1.2387 -0.3139 9 6 1.3617 -2.4005 0.4031 10 6 0.4307 -2.3787 1.4626 11 9 0.1536 -1.2186 2.0970 12 6 -0.1992 -3.5434 1.8451 13 6 0.0858 -4.7371 1.2014 14 6 1.0052 -4.7755 0.1601 15 8 1.2759 -5.9539 -0.4625 16 6 0.5794 -7.1104 0.0063 17 9 0.8803 -7.3205 1.3563 18 9 -0.7983 -6.9159 -0.1395 19 6 1.6457 -3.6183 -0.2452 20 9 2.5391 -3.6559 -1.2580 21 1 -0.4851 0.8400 -0.0004 22 1 -0.9155 -3.5264 2.6532 23 1 -0.4104 -5.6448 1.5117 24 1 0.8874 -7.9801 -0.5739 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396124938.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:21 Heat of formation + Delta-G solvation = -217.502422 kcal Electronic energy + Delta-G solvation = -18399.323272 eV Core-core repulsion = 14584.479753 eV Total energy + Delta-G solvation = -3814.843518 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.97166 -47.38191 -47.13749 -46.97066 -38.66183 -36.21810 -33.69170 -30.03553 -28.72046 -25.58433 -25.38380 -21.58968 -21.34871 -18.74188 -17.87934 -17.53735 -17.01281 -16.50519 -15.57853 -15.34593 -14.78219 -14.56280 -14.22736 -13.85396 -13.66311 -13.35713 -13.22189 -13.03812 -12.95574 -12.88153 -12.21664 -11.73911 -11.56449 -11.27814 -11.20109 -10.70681 -10.57162 -10.11527 -9.84455 -9.21953 -7.68330 -7.12066 -6.99787 -4.64984 2.34302 2.38965 3.01640 3.03272 3.07467 3.13543 3.80542 3.86414 4.32193 4.64237 4.93634 5.09699 5.39846 5.69875 5.94258 6.18453 6.31032 6.89139 6.93947 7.09507 7.14677 7.39831 7.61589 7.88321 8.18724 8.48909 8.57250 9.99890 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.039789 B = 0.007408 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.535525 B = 3778.751924 C = 4189.615032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.077 3.923 3 Si 0.918 3.082 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.451 4.451 8 H 0.092 0.908 9 C 0.082 3.918 10 C 0.042 3.958 11 F -0.136 7.136 12 C -0.109 4.109 13 C -0.259 4.259 14 C 0.084 3.916 15 O -0.322 6.322 16 C 0.412 3.588 17 F -0.203 7.203 18 F -0.203 7.203 19 C -0.007 4.007 20 F -0.146 7.146 21 H 0.288 0.712 22 H 0.114 0.886 23 H 0.121 0.879 24 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 -7.381 0.634 7.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.145 4.145 3 Si 0.742 3.258 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.478 4.478 8 H 0.110 0.890 9 C 0.077 3.923 10 C 0.021 3.979 11 F -0.114 7.114 12 C -0.129 4.129 13 C -0.279 4.279 14 C 0.041 3.959 15 O -0.241 6.241 16 C 0.322 3.678 17 F -0.185 7.185 18 F -0.185 7.185 19 C -0.028 4.028 20 F -0.125 7.125 21 H 0.099 0.901 22 H 0.132 0.868 23 H 0.138 0.862 24 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.005 -7.200 0.485 7.217 hybrid contribution 0.011 0.790 0.146 0.804 sum 0.006 -6.410 0.632 6.441 Atomic orbital electron populations 1.69763 1.07902 1.30520 1.30745 1.25875 0.94762 1.01617 0.92235 0.86129 0.80626 0.79750 0.79335 1.19246 1.19786 1.18131 1.19341 0.99157 0.90527 1.38817 0.88981 1.17281 0.92534 0.91569 0.90902 1.17407 1.03711 0.80960 0.95846 1.91348 1.92594 1.47463 1.80026 1.20405 1.00194 0.91521 1.00736 1.20325 1.06346 0.98853 1.02339 1.18564 0.99116 0.82787 0.95479 1.86571 1.63627 1.15227 1.58638 1.23165 0.74833 0.90807 0.79031 1.93066 1.92647 1.95017 1.37807 1.93073 1.34154 1.95863 1.95365 1.16696 1.00469 0.91778 0.93859 1.91316 1.66181 1.97021 1.57934 0.90071 0.86793 0.86160 0.81279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.00 11.13 55.55 0.62 -19.38 14 2 C 0.08 1.95 4.52 -17.33 -0.08 1.87 14 3 Si 0.92 18.79 29.60 -169.99 -5.03 13.76 14 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 14 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 14 6 H -0.26 -5.22 7.11 56.52 0.40 -4.81 14 7 C -0.45 -12.06 8.57 -37.82 -0.32 -12.38 14 8 H 0.09 2.38 7.92 -52.49 -0.42 1.97 14 9 C 0.08 2.19 5.39 -106.71 -0.58 1.62 14 10 C 0.04 1.07 6.68 -38.66 -0.26 0.82 14 11 F -0.14 -3.57 14.30 2.25 0.03 -3.53 14 12 C -0.11 -2.50 10.00 -39.60 -0.40 -2.89 14 13 C -0.26 -5.70 8.26 -39.19 -0.32 -6.02 14 14 C 0.08 1.94 6.48 -39.28 -0.25 1.68 14 15 O -0.32 -6.37 10.29 -19.75 -0.20 -6.57 14 16 C 0.41 6.03 5.98 101.05 0.60 6.64 14 17 F -0.20 -3.20 15.57 2.25 0.04 -3.17 14 18 F -0.20 -3.26 15.57 2.25 0.04 -3.23 14 19 C -0.01 -0.18 7.31 -38.56 -0.28 -0.46 14 20 F -0.15 -3.71 16.67 2.25 0.04 -3.67 14 21 H 0.29 6.81 8.30 -40.82 -0.34 6.47 14 22 H 0.11 2.29 8.06 -52.48 -0.42 1.87 14 23 H 0.12 2.39 5.05 -52.48 -0.27 2.13 14 24 H 0.17 1.47 8.14 -51.93 -0.42 1.05 14 LS Contribution 235.11 15.07 3.54 3.54 Total: -1.00 -29.21 235.11 -3.48 -32.69 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -0.66 Total: -1.31 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -1.89 Total: -9.14 kcal Atomic # 7 Polarization: -20.00 SS G_CDS: 0.62 Total: -19.38 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.20 Total: -6.57 kcal Atomic # 9 Polarization: -13.74 SS G_CDS: 0.14 Total: -13.60 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -29.21 -3.48 -32.69 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396124938.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.809 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds