Wall clock time and date at job start Mon Mar 30 2020 06:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30918 * 1 3 3 Si 1.86799 * 119.99905 * 2 1 4 4 H 1.48495 * 109.47159 * 269.99986 * 3 2 1 5 5 H 1.48506 * 109.46864 * 29.99865 * 3 2 1 6 6 H 1.48502 * 109.47418 * 149.99391 * 3 2 1 7 7 C 1.39869 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99487 * 163.10272 * 7 2 1 9 9 C 1.41118 * 120.00362 * 343.10554 * 7 2 1 10 10 C 1.40827 * 120.19037 * 334.50780 * 9 7 2 11 11 C 1.36471 * 119.94278 * 180.02562 * 10 9 7 12 12 F 1.35099 * 119.83635 * 180.02562 * 11 10 9 13 13 C 1.39621 * 120.33224 * 0.02562 * 11 10 9 14 14 O 1.35719 * 119.80605 * 179.97438 * 13 11 10 15 15 C 1.42902 * 117.00121 * 180.02562 * 14 13 11 16 16 F 1.39901 * 109.46981 * 299.99841 * 15 14 13 17 17 F 1.39897 * 109.46957 * 59.99589 * 15 14 13 18 18 C 1.39092 * 120.39050 * 359.97438 * 13 11 10 19 19 C 1.37780 * 120.04982 * 0.02562 * 18 13 11 20 20 F 1.35097 * 120.16840 * 180.02562 * 19 18 13 21 21 H 0.96999 * 119.99852 * 0.02562 * 1 2 3 22 22 H 1.07999 * 120.03080 * 359.74487 * 10 9 7 23 23 H 1.08998 * 109.47245 * 179.97438 * 15 14 13 24 24 H 1.07993 * 119.98174 * 180.02562 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0464 -1.4000 5 1 1.4405 2.6527 0.7000 6 1 3.5407 1.4403 0.7002 7 6 2.0085 -1.2113 0.0005 8 1 3.0536 -1.2315 -0.2713 9 6 1.3487 -2.4069 0.3562 10 6 0.2183 -2.3693 1.1954 11 6 -0.4156 -3.5287 1.5366 12 9 -1.5000 -3.4901 2.3413 13 6 0.0510 -4.7546 1.0581 14 8 -0.5873 -5.9011 1.4046 15 6 -0.0587 -7.1215 0.8817 16 9 -0.0897 -7.0818 -0.5164 17 9 1.2620 -7.2809 1.3145 18 6 1.1661 -4.8078 0.2285 19 6 1.8183 -3.6471 -0.1260 20 9 2.9013 -3.6960 -0.9321 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1438 -1.4243 1.5723 23 1 -0.6602 -7.9589 1.2351 24 1 1.5211 -5.7596 -0.1381 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396125341.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:07 Heat of formation + Delta-G solvation = -240.289603 kcal Electronic energy + Delta-G solvation = -18254.447825 eV Core-core repulsion = 14438.616180 eV Total energy + Delta-G solvation = -3815.831645 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.20883 -49.69350 -49.39739 -48.21121 -40.27926 -38.23541 -35.48164 -31.58215 -30.86926 -28.02686 -26.18988 -23.77629 -22.99149 -20.00638 -19.96248 -18.89606 -18.79065 -18.00657 -17.55179 -17.30705 -16.71033 -16.46829 -16.01106 -15.87880 -15.19694 -15.03788 -14.76391 -14.65388 -14.52056 -14.45013 -13.94330 -13.62396 -13.34559 -13.03462 -12.71268 -12.60107 -12.17963 -12.00929 -11.70045 -11.11219 -9.70111 -9.27496 -8.83726 -6.55142 0.39185 0.49133 1.38428 1.44127 1.55167 1.84298 2.15252 2.37615 2.64377 3.19320 3.41660 3.56258 3.77497 3.80062 3.98045 4.38787 4.66178 4.85207 4.97818 5.14310 5.38259 5.62106 5.73753 6.02847 6.31000 6.56055 6.60375 8.11234 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.033566 B = 0.007465 C = 0.006449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.975433 B = 3749.710738 C = 4340.932335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.037 3.963 3 Si 0.993 3.007 4 H -0.260 1.260 5 H -0.259 1.259 6 H -0.256 1.256 7 C -0.469 4.469 8 H 0.087 0.913 9 C 0.069 3.931 10 C -0.174 4.174 11 C 0.099 3.901 12 F -0.148 7.148 13 C -0.044 4.044 14 O -0.327 6.327 15 C 0.403 3.597 16 F -0.215 7.215 17 F -0.214 7.214 18 C -0.150 4.150 19 C -0.031 4.031 20 F -0.155 7.155 21 H 0.300 0.700 22 H 0.139 0.861 23 H 0.239 0.761 24 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.756 -6.333 1.936 6.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.181 4.181 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.183 1.183 6 H -0.180 1.180 7 C -0.496 4.496 8 H 0.105 0.895 9 C 0.066 3.934 10 C -0.194 4.194 11 C 0.079 3.921 12 F -0.127 7.127 13 C -0.087 4.087 14 O -0.246 6.246 15 C 0.314 3.686 16 F -0.197 7.197 17 F -0.196 7.196 18 C -0.169 4.169 19 C -0.052 4.052 20 F -0.134 7.134 21 H 0.111 0.889 22 H 0.156 0.844 23 H 0.255 0.745 24 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.107 -6.208 2.012 6.619 hybrid contribution 0.498 0.492 -0.378 0.795 sum -0.609 -5.716 1.635 5.977 Atomic orbital electron populations 1.69827 1.09116 1.31967 1.32016 1.26905 0.95625 1.04919 0.90664 0.85028 0.79093 0.74812 0.79879 1.18413 1.18295 1.17988 1.19773 0.98477 0.91640 1.39752 0.89475 1.17661 0.92466 0.92123 0.91192 1.20681 0.99989 0.96156 1.02584 1.16709 0.87330 0.92028 0.95997 1.91370 1.52549 1.97351 1.71440 1.17882 0.98505 0.84607 1.07740 1.86425 1.54504 1.13046 1.70585 1.24291 0.80031 0.89952 0.74324 1.93048 1.96295 1.96710 1.33651 1.93045 1.41699 1.95549 1.89291 1.20825 0.96563 0.98367 1.01187 1.17642 0.91475 0.94485 1.01568 1.91281 1.53059 1.97265 1.71817 0.88882 0.84390 0.74532 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.26 10.96 21.82 0.24 -39.02 14 2 C 0.04 1.75 5.15 85.22 0.44 2.19 14 3 Si 0.99 35.46 29.59 68.60 2.03 37.49 14 4 H -0.26 -8.98 7.11 99.48 0.71 -8.27 14 5 H -0.26 -8.63 7.11 99.48 0.71 -7.92 14 6 H -0.26 -9.05 7.11 99.48 0.71 -8.35 14 7 C -0.47 -24.35 8.76 23.37 0.20 -24.15 14 8 H 0.09 4.43 7.74 -2.91 -0.02 4.40 14 9 C 0.07 3.69 5.57 -21.23 -0.12 3.57 14 10 C -0.17 -8.96 8.58 22.49 0.19 -8.77 14 11 C 0.10 4.82 7.25 22.19 0.16 4.98 14 12 F -0.15 -6.83 17.09 44.97 0.77 -6.06 14 13 C -0.04 -1.97 6.52 22.81 0.15 -1.83 14 14 O -0.33 -12.25 10.27 -90.41 -0.93 -13.18 14 15 C 0.40 10.99 5.98 113.37 0.68 11.67 14 16 F -0.22 -6.73 15.56 44.97 0.70 -6.03 14 17 F -0.21 -6.56 15.56 44.97 0.70 -5.86 14 18 C -0.15 -6.91 8.20 22.37 0.18 -6.73 14 19 C -0.03 -1.59 7.30 22.87 0.17 -1.43 14 20 F -0.16 -7.76 16.72 44.97 0.75 -7.01 14 21 H 0.30 12.96 8.30 -92.71 -0.77 12.19 14 22 H 0.14 7.22 6.20 -2.91 -0.02 7.20 14 23 H 0.24 3.13 8.14 -2.39 -0.02 3.11 14 24 H 0.14 5.88 5.06 -2.91 -0.01 5.87 14 Total: -1.00 -59.53 235.84 7.59 -51.93 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.28 Total: 8.23 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 2.06 Total: -20.49 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.24 Total: -39.02 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.93 Total: -13.18 kcal Atomic # 9 Polarization: -27.88 SS G_CDS: 2.92 Total: -24.96 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 2.03 Total: 37.49 kcal Total: -59.53 7.59 -51.93 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396125341.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.356 kcal (2) G-P(sol) polarization free energy of solvation -59.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds