Wall clock time and date at job start Mon Mar 30 2020 06:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30934 * 1 3 3 Si 1.86794 * 120.00121 * 2 1 4 4 H 1.48502 * 109.47057 * 89.99989 * 3 2 1 5 5 H 1.48505 * 109.47137 * 209.99976 * 3 2 1 6 6 H 1.48499 * 109.47289 * 329.99918 * 3 2 1 7 7 C 1.39882 * 119.99328 * 179.72547 * 2 1 3 8 8 H 1.08002 * 120.00487 * 329.34241 * 7 2 1 9 9 C 1.41045 * 119.99853 * 149.35244 * 7 2 1 10 10 C 1.41040 * 120.27008 * 325.49631 * 9 7 2 11 11 F 1.35096 * 120.11607 * 359.95883 * 10 9 7 12 12 C 1.37692 * 119.76683 * 179.97438 * 10 9 7 13 13 C 1.39005 * 120.34097 * 0.02562 * 12 10 9 14 14 F 1.35101 * 119.71396 * 180.02562 * 13 12 10 15 15 C 1.38658 * 120.56456 * 0.02562 * 13 12 10 16 16 C 1.38211 * 120.22081 * 359.70109 * 15 13 12 17 17 O 1.35664 * 120.17485 * 180.29642 * 16 15 13 18 18 C 1.42903 * 116.99927 * 0.25658 * 17 16 15 19 19 F 1.39899 * 109.47054 * 299.99584 * 18 17 16 20 20 F 1.39902 * 109.47247 * 60.00074 * 18 17 16 21 21 H 0.96994 * 120.00369 * 174.86405 * 1 2 3 22 22 H 1.08002 * 119.82789 * 179.97438 * 12 10 9 23 23 H 1.07998 * 119.88965 * 179.97438 * 15 13 12 24 24 H 1.09000 * 109.46870 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.4908 2.0463 1.4001 5 1 3.5409 1.4401 -0.7001 6 1 1.4409 2.6526 -0.7000 7 6 2.0086 -1.2115 0.0058 8 1 1.5818 -2.0791 0.4869 9 6 3.2713 -1.2999 -0.6164 10 6 3.5425 -0.5556 -1.7834 11 9 2.5924 0.2463 -2.3120 12 6 4.7789 -0.6493 -2.3820 13 6 5.7596 -1.4735 -1.8425 14 9 6.9686 -1.5555 -2.4400 15 6 5.5077 -2.2122 -0.6964 16 6 4.2767 -2.1314 -0.0733 17 8 4.0332 -2.8500 1.0514 18 6 5.0977 -3.6675 1.5421 19 9 5.4533 -4.6051 0.5666 20 9 6.2030 -2.8638 1.8414 21 1 -0.4850 -0.8366 -0.0752 22 1 4.9875 -0.0801 -3.2759 23 1 6.2775 -2.8495 -0.2868 24 1 4.7714 -4.1863 2.4434 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396125782.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:18 Heat of formation + Delta-G solvation = -234.399957 kcal Electronic energy + Delta-G solvation = -18579.066993 eV Core-core repulsion = 14763.490742 eV Total energy + Delta-G solvation = -3815.576251 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.23136 -49.78724 -49.62495 -48.22662 -40.51191 -37.79213 -35.76899 -32.09597 -31.02011 -27.34652 -26.36720 -23.54704 -22.98130 -20.64677 -20.07411 -19.27571 -18.79970 -18.02261 -17.53796 -17.20251 -16.73774 -16.28771 -16.18325 -15.83986 -15.41698 -15.35105 -15.10532 -14.83581 -14.61459 -14.44334 -14.41906 -13.55857 -13.14224 -12.92189 -12.85622 -12.26301 -12.11398 -11.86809 -11.51254 -10.99863 -9.72363 -9.52939 -9.37281 -6.60615 0.23313 0.32875 1.41349 1.46754 1.66535 1.81745 2.16397 2.32869 2.59764 2.92593 3.32979 3.57725 3.78860 3.79140 3.99715 4.08839 4.22752 4.76282 5.10759 5.16692 5.17650 5.42327 5.73417 5.85549 6.10445 6.35469 6.59043 7.82429 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.010779 C = 0.008391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.792671 B = 2597.058106 C = 3336.226453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.030 3.970 3 Si 1.090 2.910 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.071 0.929 9 C 0.036 3.964 10 C 0.005 3.995 11 F -0.140 7.140 12 C -0.150 4.150 13 C 0.017 3.983 14 F -0.148 7.148 15 C -0.187 4.187 16 C 0.040 3.960 17 O -0.318 6.318 18 C 0.401 3.599 19 F -0.213 7.213 20 F -0.211 7.211 21 H 0.287 0.713 22 H 0.151 0.849 23 H 0.141 0.859 24 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.844 -3.735 2.490 9.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.190 4.190 3 Si 0.911 3.089 4 H -0.202 1.202 5 H -0.188 1.188 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.089 0.911 9 C 0.032 3.968 10 C -0.015 4.015 11 F -0.119 7.119 12 C -0.170 4.170 13 C -0.003 4.003 14 F -0.127 7.127 15 C -0.206 4.206 16 C -0.004 4.004 17 O -0.235 6.235 18 C 0.311 3.689 19 F -0.195 7.195 20 F -0.193 7.193 21 H 0.098 0.902 22 H 0.168 0.832 23 H 0.159 0.841 24 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 7.376 -2.145 2.620 8.116 hybrid contribution 0.116 -1.919 -0.383 1.960 sum 7.492 -4.064 2.237 8.812 Atomic orbital electron populations 1.70614 1.08948 1.32971 1.29936 1.28191 0.95515 1.06322 0.88926 0.83393 0.76559 0.71249 0.77722 1.20219 1.18800 1.19090 1.20204 1.01483 0.99430 1.34342 0.91073 1.17194 0.93202 0.94046 0.92367 1.16915 0.87514 1.01648 0.95459 1.91096 1.63955 1.71314 1.85582 1.20680 0.91690 1.02017 1.02595 1.16450 0.82050 1.05138 0.96688 1.91378 1.42115 1.95885 1.83279 1.21111 0.97281 1.04244 0.97984 1.18293 0.92792 1.00519 0.88794 1.86530 1.39519 1.56934 1.40561 1.24294 0.75585 0.78483 0.90495 1.93043 1.92379 1.66177 1.67869 1.93048 1.57270 1.75710 1.93280 0.90176 0.83166 0.84095 0.75124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.38 13.66 21.82 0.30 -42.08 14 2 C 0.03 1.57 4.67 85.22 0.40 1.97 14 3 Si 1.09 48.39 25.86 68.60 1.77 50.16 14 4 H -0.28 -11.43 7.11 99.48 0.71 -10.72 14 5 H -0.26 -11.59 5.35 99.48 0.53 -11.06 14 6 H -0.27 -11.36 7.11 99.48 0.71 -10.66 14 7 C -0.53 -27.88 8.81 23.36 0.21 -27.67 14 8 H 0.07 3.94 7.99 -2.91 -0.02 3.92 14 9 C 0.04 1.78 4.89 -21.14 -0.10 1.68 14 10 C 0.01 0.24 5.07 22.83 0.12 0.35 14 11 F -0.14 -6.73 12.83 44.97 0.58 -6.16 14 12 C -0.15 -6.30 9.97 22.32 0.22 -6.08 14 13 C 0.02 0.70 7.31 22.55 0.16 0.86 14 14 F -0.15 -5.68 17.26 44.97 0.78 -4.91 14 15 C -0.19 -7.72 8.22 22.36 0.18 -7.53 14 16 C 0.04 1.79 6.51 23.02 0.15 1.94 14 17 O -0.32 -12.52 9.83 -89.80 -0.88 -13.40 14 18 C 0.40 11.09 5.98 113.37 0.68 11.77 14 19 F -0.21 -6.40 15.57 44.97 0.70 -5.70 14 20 F -0.21 -6.34 15.60 44.97 0.70 -5.64 14 21 H 0.29 14.83 8.73 -92.71 -0.81 14.02 14 22 H 0.15 5.40 8.06 -2.91 -0.02 5.37 14 23 H 0.14 5.31 5.08 -2.91 -0.01 5.29 14 24 H 0.23 3.46 8.14 -2.39 -0.02 3.44 14 Total: -1.00 -57.85 229.61 7.02 -50.84 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: 1.06 Total: -0.40 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 2.02 Total: -22.71 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.30 Total: -42.08 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.88 Total: -13.40 kcal Atomic # 9 Polarization: -25.16 SS G_CDS: 2.75 Total: -22.40 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 1.77 Total: 50.16 kcal Total: -57.85 7.02 -50.84 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396125782.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.563 kcal (2) G-P(sol) polarization free energy of solvation -57.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds