Wall clock time and date at job start Mon Mar 30 2020 06:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86803 * 119.99903 * 2 1 4 4 H 1.48500 * 109.47167 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46851 * 299.99997 * 3 2 1 6 6 H 1.48495 * 109.46988 * 60.00005 * 3 2 1 7 7 C 1.39889 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00450 * 196.72512 * 7 2 1 9 9 C 1.41109 * 120.00260 * 16.45049 * 7 2 1 10 10 C 1.40798 * 120.24771 * 25.76527 * 9 7 2 11 11 C 1.36412 * 119.98497 * 180.02562 * 10 9 7 12 12 C 1.39098 * 120.51931 * 359.97438 * 11 10 9 13 13 F 1.35097 * 119.74883 * 180.02562 * 12 11 10 14 14 C 1.38753 * 120.50993 * 0.02562 * 12 11 10 15 15 F 1.35091 * 120.00363 * 179.97438 * 14 12 11 16 16 C 1.38479 * 119.99150 * 359.75910 * 14 12 11 17 17 O 1.35718 * 120.25373 * 180.27450 * 16 14 12 18 18 C 1.42894 * 117.00099 * 270.21507 * 17 16 14 19 19 F 1.39898 * 109.47502 * 299.99913 * 18 17 16 20 20 F 1.39904 * 109.47070 * 60.00013 * 18 17 16 21 21 H 0.96998 * 120.00290 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.00375 * 0.02878 * 10 9 7 23 23 H 1.08003 * 119.73805 * 180.02562 * 11 10 9 24 24 H 1.08999 * 109.46963 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7030 1.3465 -0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8842 2.3964 1.2125 7 6 2.0085 -1.2115 0.0005 8 1 3.0542 -1.2312 0.2697 9 6 1.3463 -2.4087 -0.3450 10 6 0.2139 -2.3770 -1.1811 11 6 -0.4224 -3.5376 -1.5113 12 6 0.0385 -4.7580 -1.0285 13 9 -0.6033 -5.8979 -1.3658 14 6 1.1525 -4.8136 -0.2031 15 9 1.5910 -6.0043 0.2604 16 6 1.8173 -3.6488 0.1419 17 8 2.9107 -3.6976 0.9443 18 6 2.6867 -3.6032 2.3525 19 9 2.0602 -2.3869 2.6445 20 9 1.8691 -4.6602 2.7666 21 1 -0.4850 0.8400 0.0004 22 1 -0.1507 -1.4341 -1.5609 23 1 -1.2904 -3.5087 -2.1533 24 1 3.6410 -3.6557 2.8765 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396129442.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:12 Heat of formation + Delta-G solvation = -228.198791 kcal Electronic energy + Delta-G solvation = -18716.944750 eV Core-core repulsion = 14901.637402 eV Total energy + Delta-G solvation = -3815.307348 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 3.34 seconds Orbital eigenvalues (eV) -48.30193 -48.13335 -47.30175 -46.29931 -38.32630 -36.04760 -33.86339 -29.69552 -28.95323 -25.73537 -24.69254 -21.53907 -21.32457 -18.09743 -17.82255 -17.32974 -16.99815 -16.29841 -15.60280 -15.50330 -15.19168 -14.95824 -13.89988 -13.77104 -13.56060 -13.17661 -13.11202 -12.69907 -12.57755 -12.44253 -12.12121 -11.75519 -11.49914 -11.40347 -10.96535 -10.59309 -10.43866 -10.12173 -9.80149 -9.43853 -7.76969 -7.57269 -7.17492 -4.73989 2.11980 2.30926 2.90156 2.91924 2.97504 3.67398 3.88170 4.21683 4.47520 5.10600 5.15727 5.38777 5.58981 5.70151 5.98560 6.32664 6.48881 6.74196 6.81429 7.10451 7.42604 7.50301 7.77404 7.85726 8.22738 8.38939 8.54047 9.74916 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.023056 B = 0.010729 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.118664 B = 2609.142032 C = 3509.313380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.408 4.408 8 H 0.093 0.907 9 C 0.120 3.880 10 C -0.137 4.137 11 C -0.100 4.100 12 C -0.078 4.078 13 F -0.160 7.160 14 C 0.111 3.889 15 F -0.145 7.145 16 C -0.090 4.090 17 O -0.307 6.307 18 C 0.389 3.611 19 F -0.197 7.197 20 F -0.216 7.216 21 H 0.290 0.710 22 H 0.137 0.863 23 H 0.115 0.885 24 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 0.643 1.437 3.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.149 4.149 3 Si 0.743 3.257 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.111 0.889 9 C 0.116 3.884 10 C -0.156 4.156 11 C -0.120 4.120 12 C -0.099 4.099 13 F -0.139 7.139 14 C 0.090 3.910 15 F -0.123 7.123 16 C -0.135 4.135 17 O -0.226 6.226 18 C 0.299 3.701 19 F -0.179 7.179 20 F -0.198 7.198 21 H 0.101 0.899 22 H 0.155 0.845 23 H 0.133 0.867 24 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.806 0.714 1.430 3.229 hybrid contribution -0.118 0.289 0.353 0.471 sum 2.688 1.004 1.783 3.378 Atomic orbital electron populations 1.69820 1.07885 1.30449 1.30945 1.26118 0.94904 1.02200 0.91711 0.86042 0.81102 0.79592 0.78964 1.17827 1.19238 1.19492 1.19684 0.98224 0.90084 1.35511 0.88898 1.17657 0.90652 0.90853 0.89235 1.20951 0.98131 0.97068 0.99476 1.20408 1.00144 0.90861 1.00562 1.16961 0.98432 0.82694 1.11769 1.91315 1.81291 1.49188 1.92141 1.17728 0.94429 0.80378 0.98444 1.91372 1.89025 1.44586 1.87365 1.17986 0.98396 0.91558 1.05580 1.86625 1.30444 1.91686 1.13830 1.23627 0.89343 0.71951 0.85169 1.93106 1.85555 1.45934 1.93282 1.93024 1.77386 1.58938 1.90499 0.89908 0.84497 0.86682 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.71 10.96 55.55 0.61 -17.10 14 2 C 0.07 1.63 5.16 -17.33 -0.09 1.54 14 3 Si 0.92 16.79 29.59 -169.99 -5.03 11.76 14 4 H -0.26 -4.64 7.11 56.52 0.40 -4.23 14 5 H -0.27 -4.75 7.11 56.52 0.40 -4.35 14 6 H -0.27 -4.90 7.11 56.52 0.40 -4.50 14 7 C -0.41 -9.84 7.44 -37.88 -0.28 -10.13 14 8 H 0.09 2.20 7.65 -52.49 -0.40 1.80 14 9 C 0.12 3.01 5.45 -106.67 -0.58 2.43 14 10 C -0.14 -3.26 8.62 -39.27 -0.34 -3.60 14 11 C -0.10 -2.27 9.94 -39.92 -0.40 -2.67 14 12 C -0.08 -1.87 7.32 -39.07 -0.29 -2.16 14 13 F -0.16 -3.74 17.17 2.25 0.04 -3.70 14 14 C 0.11 2.75 7.02 -39.30 -0.28 2.48 14 15 F -0.14 -3.52 16.65 2.25 0.04 -3.48 14 16 C -0.09 -2.23 5.37 -38.33 -0.21 -2.43 14 17 O -0.31 -6.98 9.52 -18.86 -0.18 -7.16 14 18 C 0.39 7.58 6.35 101.05 0.64 8.22 14 19 F -0.20 -4.29 15.83 2.25 0.04 -4.25 14 20 F -0.22 -4.55 16.61 2.25 0.04 -4.51 14 21 H 0.29 5.96 8.30 -40.82 -0.34 5.62 14 22 H 0.14 3.20 6.19 -52.49 -0.33 2.88 14 23 H 0.12 2.25 8.06 -52.48 -0.42 1.83 14 24 H 0.15 2.06 8.14 -51.93 -0.42 1.64 14 LS Contribution 238.67 15.07 3.60 3.60 Total: -1.00 -27.10 238.67 -3.38 -30.48 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -0.71 Total: 0.68 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -1.81 Total: -6.31 kcal Atomic # 7 Polarization: -17.71 SS G_CDS: 0.61 Total: -17.10 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.18 Total: -7.16 kcal Atomic # 9 Polarization: -16.10 SS G_CDS: 0.15 Total: -15.95 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.76 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.10 -3.38 -30.48 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396129442.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.721 kcal (2) G-P(sol) polarization free energy of solvation -27.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.34 seconds