Wall clock time and date at job start Mon Mar 30 2020 06:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86805 * 119.99595 * 2 1 4 4 H 1.48502 * 109.46873 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46884 * 119.99802 * 3 2 1 6 6 H 1.48499 * 109.47267 * 240.00109 * 3 2 1 7 7 C 1.39891 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00527 * 154.64527 * 7 2 1 9 9 C 1.41307 * 120.00269 * 334.64471 * 7 2 1 10 10 C 1.40795 * 120.17664 * 334.44646 * 9 7 2 11 11 C 1.37750 * 119.85150 * 179.78878 * 10 9 7 12 12 F 1.35092 * 119.88856 * 180.23176 * 11 10 9 13 13 C 1.39049 * 120.22629 * 0.46380 * 11 10 9 14 14 F 1.35106 * 119.81603 * 179.76632 * 13 11 10 15 15 C 1.39362 * 120.37044 * 359.78842 * 13 11 10 16 16 O 1.35939 * 119.92960 * 179.97438 * 15 13 11 17 17 C 1.42903 * 117.00192 * 179.97438 * 16 15 13 18 18 F 1.39898 * 109.46940 * 300.00538 * 17 16 15 19 19 F 1.39905 * 109.46635 * 59.99837 * 17 16 15 20 20 C 1.37995 * 120.13965 * 359.97438 * 15 13 11 21 21 H 0.97006 * 119.99843 * 174.19899 * 1 2 3 22 22 H 1.07998 * 120.07046 * 0.02562 * 10 9 7 23 23 H 1.08999 * 109.47333 * 179.97438 * 17 16 15 24 24 H 1.07997 * 120.11581 * 180.02562 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 1.2773 2.7465 0.0006 5 1 3.0962 1.6965 1.2126 6 1 3.0962 1.6966 -1.2125 7 6 2.0081 -1.2114 -0.0005 8 1 3.0101 -1.2563 -0.4011 9 6 1.4038 -2.3766 0.5230 10 6 0.3906 -2.2726 1.4951 11 6 -0.1970 -3.4126 1.9976 12 9 -1.1725 -3.3136 2.9269 13 6 0.2139 -4.6652 1.5552 14 9 -0.3648 -5.7781 2.0573 15 6 1.2196 -4.7792 0.5973 16 8 1.6147 -6.0082 0.1715 17 6 2.6500 -6.0522 -0.8124 18 9 2.2305 -5.3732 -1.9614 19 9 3.8020 -5.4419 -0.3047 20 6 1.8152 -3.6470 0.0799 21 1 -0.4850 -0.8358 -0.0849 22 1 0.0722 -1.3011 1.8431 23 1 2.8694 -7.0901 -1.0629 24 1 2.5942 -3.7357 -0.6628 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396129736.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:25 Heat of formation + Delta-G solvation = -247.225419 kcal Electronic energy + Delta-G solvation = -18324.977523 eV Core-core repulsion = 14508.845119 eV Total energy + Delta-G solvation = -3816.132404 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.27720 -50.26001 -49.26215 -48.27534 -40.57873 -38.57256 -35.59105 -31.48334 -30.81541 -27.45783 -26.89655 -23.58113 -23.39981 -20.78815 -19.40921 -19.17490 -18.87737 -18.37196 -17.73539 -17.32181 -17.16808 -16.18659 -15.91659 -15.80288 -15.46124 -15.29092 -15.06385 -14.77420 -14.59425 -14.53930 -14.36496 -13.51198 -13.27482 -13.22097 -12.77785 -12.23010 -12.09448 -11.97750 -11.70414 -10.99831 -9.79297 -9.52931 -9.35826 -6.77983 0.26001 0.36652 1.52108 1.54231 1.57211 1.82795 2.25796 2.32768 2.56259 3.06535 3.22263 3.54781 3.63169 3.70783 3.98720 4.25773 4.41107 4.52908 5.05921 5.22142 5.29237 5.49647 5.58812 5.82102 6.00509 6.37537 6.58019 7.79503 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.019986 B = 0.009534 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.656833 B = 2936.068660 C = 4066.255423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.005 3.995 3 Si 1.120 2.880 4 H -0.271 1.271 5 H -0.259 1.259 6 H -0.251 1.251 7 C -0.503 4.503 8 H 0.095 0.905 9 C 0.104 3.896 10 C -0.263 4.263 11 C 0.129 3.871 12 F -0.144 7.144 13 C -0.124 4.124 14 F -0.153 7.153 15 C 0.145 3.855 16 O -0.330 6.330 17 C 0.406 3.594 18 F -0.211 7.211 19 F -0.210 7.210 20 C -0.287 4.287 21 H 0.289 0.711 22 H 0.120 0.880 23 H 0.246 0.754 24 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.825 -5.110 -2.776 8.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.215 4.215 3 Si 0.935 3.065 4 H -0.195 1.195 5 H -0.184 1.184 6 H -0.175 1.175 7 C -0.529 4.529 8 H 0.113 0.887 9 C 0.100 3.900 10 C -0.283 4.283 11 C 0.109 3.891 12 F -0.123 7.123 13 C -0.145 4.145 14 F -0.132 7.132 15 C 0.100 3.900 16 O -0.248 6.248 17 C 0.318 3.682 18 F -0.193 7.193 19 F -0.191 7.191 20 C -0.307 4.307 21 H 0.102 0.898 22 H 0.138 0.862 23 H 0.261 0.739 24 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.440 -3.685 -2.637 7.080 hybrid contribution -0.334 -1.807 0.179 1.846 sum 5.105 -5.492 -2.458 7.891 Atomic orbital electron populations 1.70593 1.09117 1.33941 1.27255 1.28733 0.95488 1.07859 0.89379 0.82972 0.74816 0.69057 0.79661 1.19521 1.18386 1.17485 1.20995 1.03535 0.93995 1.34387 0.88657 1.17486 0.89825 0.93371 0.89292 1.20985 1.06509 0.95898 1.04926 1.17199 0.88956 0.92819 0.90136 1.91389 1.60331 1.97020 1.63529 1.16241 1.06939 0.81359 1.09938 1.91303 1.84210 1.50437 1.87240 1.18227 0.93892 0.84150 0.93715 1.86524 1.53981 1.27502 1.56746 1.24410 0.73500 0.96634 0.73669 1.93068 1.90038 1.84254 1.51890 1.93065 1.51685 1.86970 1.87421 1.21295 1.09594 0.91007 1.08817 0.89786 0.86170 0.73883 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.42 12.32 21.82 0.27 -39.15 14 2 C 0.01 0.24 4.94 85.24 0.42 0.66 14 3 Si 1.12 38.36 30.00 68.60 2.06 40.41 14 4 H -0.27 -9.26 7.11 99.48 0.71 -8.55 14 5 H -0.26 -8.42 7.11 99.48 0.71 -7.71 14 6 H -0.25 -7.75 7.11 99.48 0.71 -7.04 14 7 C -0.50 -24.62 8.98 23.43 0.21 -24.41 14 8 H 0.10 4.41 7.96 -2.91 -0.02 4.39 14 9 C 0.10 5.29 5.30 -21.30 -0.11 5.17 14 10 C -0.26 -13.40 7.91 22.78 0.18 -13.22 14 11 C 0.13 6.42 7.29 22.35 0.16 6.59 14 12 F -0.14 -6.87 17.17 44.97 0.77 -6.10 14 13 C -0.12 -6.03 7.34 22.74 0.17 -5.86 14 14 F -0.15 -7.22 17.01 44.97 0.76 -6.46 14 15 C 0.14 6.61 6.49 22.48 0.15 6.76 14 16 O -0.33 -12.36 10.29 -92.86 -0.96 -13.32 14 17 C 0.41 11.13 5.98 113.37 0.68 11.81 14 18 F -0.21 -6.74 15.58 44.97 0.70 -6.04 14 19 F -0.21 -6.56 15.58 44.97 0.70 -5.86 14 20 C -0.29 -13.53 7.99 22.81 0.18 -13.35 14 21 H 0.29 15.19 6.68 -92.70 -0.62 14.58 14 22 H 0.12 6.25 6.48 -2.91 -0.02 6.23 14 23 H 0.25 3.10 8.14 -2.39 -0.02 3.08 14 24 H 0.13 5.90 5.07 -2.91 -0.01 5.88 14 Total: -1.00 -59.27 235.79 7.77 -51.50 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.43 Total: 10.86 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 2.03 Total: -25.85 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.27 Total: -39.15 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.96 Total: -13.32 kcal Atomic # 9 Polarization: -27.39 SS G_CDS: 2.94 Total: -24.45 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.06 Total: 40.41 kcal Total: -59.27 7.77 -51.50 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396129736.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.723 kcal (2) G-P(sol) polarization free energy of solvation -59.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds