Wall clock time and date at job start Mon Mar 30 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86802 * 119.99939 * 2 1 4 4 H 1.48499 * 109.46756 * 274.85851 * 3 2 1 5 5 H 1.48498 * 109.47439 * 34.86038 * 3 2 1 6 6 H 1.48504 * 109.46981 * 154.86336 * 3 2 1 7 7 C 1.39907 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99882 * 200.01519 * 7 2 1 9 9 C 1.41106 * 120.00233 * 20.29156 * 7 2 1 10 10 C 1.41026 * 120.28855 * 36.07024 * 9 7 2 11 11 F 1.35102 * 120.11112 * 0.02562 * 10 9 7 12 12 C 1.37750 * 119.77718 * 179.78472 * 10 9 7 13 13 C 1.38730 * 120.38700 * 0.49855 * 12 10 9 14 14 C 1.38508 * 120.60371 * 359.73024 * 13 12 10 15 15 F 1.35104 * 119.89834 * 180.02562 * 14 13 12 16 16 C 1.38515 * 120.20777 * 0.02992 * 14 13 12 17 17 O 1.35722 * 120.19489 * 179.97438 * 16 14 13 18 18 C 1.42901 * 117.00177 * 270.01561 * 17 16 14 19 19 F 1.39901 * 109.47166 * 300.00655 * 18 17 16 20 20 F 1.39896 * 109.46726 * 60.00320 * 18 17 16 21 21 H 0.97006 * 119.99779 * 0.02562 * 1 2 3 22 22 H 1.08003 * 119.80720 * 180.20977 * 12 10 9 23 23 H 1.08005 * 119.70328 * 179.71402 * 13 12 10 24 24 H 1.08997 * 109.47202 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3877 2.1057 -1.3951 5 1 1.4956 2.6209 0.8002 6 1 3.5882 1.4127 0.5947 7 6 2.0085 -1.2117 0.0005 8 1 3.0396 -1.2398 0.3207 9 6 1.3686 -2.3959 -0.4227 10 6 0.4355 -2.3615 -1.4795 11 9 0.1494 -1.1925 -2.0933 12 6 -0.1797 -3.5247 -1.8871 13 6 0.1058 -4.7274 -1.2574 14 6 1.0161 -4.7787 -0.2147 15 9 1.2838 -5.9578 0.3882 16 6 1.6528 -3.6250 0.2121 17 8 2.5443 -3.6755 1.2342 18 6 2.0294 -3.4882 2.5540 19 9 1.4246 -2.2299 2.6444 20 9 1.0837 -4.4811 2.8308 21 1 -0.4850 0.8401 -0.0004 22 1 -0.8919 -3.4995 -2.6987 23 1 -0.3863 -5.6320 -1.5829 24 1 2.8449 -3.5516 3.2745 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396129793.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:49 Heat of formation + Delta-G solvation = -220.086705 kcal Electronic energy + Delta-G solvation = -18941.964095 eV Core-core repulsion = 15127.008514 eV Total energy + Delta-G solvation = -3814.955581 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.16393 -47.85574 -47.18959 -46.24095 -38.17039 -35.82493 -33.84072 -30.00897 -28.43726 -25.77140 -24.72114 -21.50278 -21.17645 -18.02771 -17.75518 -17.28714 -16.91871 -16.02686 -15.68656 -15.45873 -15.02796 -14.56505 -13.87162 -13.82794 -13.22797 -13.11884 -13.05274 -12.66499 -12.48826 -12.32832 -11.79713 -11.68995 -11.46764 -11.32941 -11.19910 -10.62898 -10.37404 -10.06258 -9.72258 -9.22034 -7.80043 -7.26765 -7.05813 -4.68936 2.09027 2.41605 2.98871 3.03661 3.04541 3.80500 3.89527 4.32986 4.53641 5.06936 5.33753 5.40323 5.63549 5.72703 5.99428 6.20051 6.47961 6.82442 6.89652 7.13799 7.30041 7.37713 7.78766 7.92228 8.18963 8.47553 8.59509 9.92304 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.023396 B = 0.011997 C = 0.008772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.497609 B = 2333.300317 C = 3191.274883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.077 3.923 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.424 4.424 8 H 0.094 0.906 9 C 0.101 3.899 10 C 0.040 3.960 11 F -0.137 7.137 12 C -0.106 4.106 13 C -0.251 4.251 14 C 0.123 3.877 15 F -0.151 7.151 16 C -0.075 4.075 17 O -0.309 6.309 18 C 0.391 3.609 19 F -0.194 7.194 20 F -0.217 7.217 21 H 0.289 0.711 22 H 0.115 0.885 23 H 0.117 0.883 24 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.024 -1.733 1.695 3.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.147 4.147 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.451 4.451 8 H 0.112 0.888 9 C 0.097 3.903 10 C 0.020 3.980 11 F -0.115 7.115 12 C -0.125 4.125 13 C -0.271 4.271 14 C 0.103 3.897 15 F -0.130 7.130 16 C -0.120 4.120 17 O -0.228 6.228 18 C 0.301 3.699 19 F -0.175 7.175 20 F -0.199 7.199 21 H 0.100 0.900 22 H 0.133 0.867 23 H 0.135 0.865 24 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.953 -1.587 1.723 3.050 hybrid contribution -0.168 0.761 0.193 0.803 sum 1.785 -0.826 1.916 2.746 Atomic orbital electron populations 1.69789 1.07990 1.30635 1.29199 1.25936 0.94747 1.01762 0.92261 0.86124 0.80589 0.79796 0.79426 1.18954 1.19993 1.18187 1.19429 0.99283 0.90436 1.35944 0.88772 1.17486 0.90316 0.92165 0.90358 1.17607 1.03751 0.80651 0.96004 1.91355 1.92436 1.46704 1.81015 1.20459 1.00117 0.91453 1.00493 1.19947 1.06355 0.98164 1.02658 1.17757 0.97282 0.79922 0.94693 1.91372 1.92974 1.45821 1.82842 1.17936 1.06312 0.92348 0.95432 1.86612 1.33502 1.90400 1.12268 1.23561 0.85061 0.72257 0.89005 1.93130 1.85928 1.42333 1.96154 1.93015 1.69839 1.63261 1.93802 0.89983 0.86672 0.86497 0.83287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.22 11.10 55.55 0.62 -18.60 14 2 C 0.08 1.87 4.50 -17.32 -0.08 1.79 14 3 Si 0.92 18.35 29.60 -169.99 -5.03 13.31 14 4 H -0.26 -5.26 7.11 56.52 0.40 -4.85 14 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 14 6 H -0.26 -5.05 7.11 56.52 0.40 -4.64 14 7 C -0.42 -10.86 7.22 -37.87 -0.27 -11.13 14 8 H 0.09 2.35 7.88 -52.48 -0.41 1.93 14 9 C 0.10 2.64 5.29 -106.62 -0.56 2.07 14 10 C 0.04 1.02 6.68 -38.70 -0.26 0.76 14 11 F -0.14 -3.50 14.23 2.25 0.03 -3.47 14 12 C -0.11 -2.35 9.99 -39.58 -0.40 -2.75 14 13 C -0.25 -5.47 10.01 -39.30 -0.39 -5.87 14 14 C 0.12 2.91 7.01 -39.38 -0.28 2.63 14 15 F -0.15 -3.42 16.75 2.25 0.04 -3.38 14 16 C -0.07 -1.86 5.36 -38.35 -0.21 -2.06 14 17 O -0.31 -7.08 9.65 -18.87 -0.18 -7.26 14 18 C 0.39 7.74 6.35 101.05 0.64 8.38 14 19 F -0.19 -4.39 15.83 2.25 0.04 -4.35 14 20 F -0.22 -4.54 16.63 2.25 0.04 -4.50 14 21 H 0.29 6.69 8.30 -40.82 -0.34 6.35 14 22 H 0.12 2.21 8.06 -52.48 -0.42 1.79 14 23 H 0.12 2.20 8.06 -52.48 -0.42 1.78 14 24 H 0.15 2.10 8.14 -51.93 -0.42 1.68 14 LS Contribution 237.97 15.07 3.59 3.59 Total: -1.00 -28.26 237.97 -3.49 -31.75 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -0.82 Total: -0.92 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -1.80 Total: -6.17 kcal Atomic # 7 Polarization: -19.22 SS G_CDS: 0.62 Total: -18.60 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.18 Total: -7.26 kcal Atomic # 9 Polarization: -15.84 SS G_CDS: 0.14 Total: -15.70 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -28.26 -3.49 -31.75 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396129793.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.334 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds