Wall clock time and date at job start Mon Mar 30 2020 06:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86796 * 120.00275 * 2 1 4 4 H 1.48497 * 109.46957 * 274.99469 * 3 2 1 5 5 H 1.48493 * 109.47263 * 34.99732 * 3 2 1 6 6 H 1.48506 * 109.47126 * 154.99888 * 3 2 1 7 7 C 1.40271 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00209 * 156.69429 * 7 2 1 9 9 C 1.40239 * 120.00264 * 336.69142 * 7 2 1 10 10 C 1.48189 * 120.41693 * 145.70030 * 9 7 2 11 11 C 1.39086 * 128.89962 * 359.97438 * 10 9 7 12 12 C 1.35927 * 115.32482 * 179.97438 * 11 10 9 13 13 C 1.41636 * 124.84906 * 179.97438 * 12 11 10 14 14 O 1.21416 * 120.00589 * 0.02562 * 13 12 11 15 15 S 1.75496 * 110.29991 * 0.02562 * 12 11 10 16 16 C 1.39980 * 118.04843 * 179.97438 * 10 9 7 17 17 C 1.39972 * 120.00280 * 359.97438 * 16 10 9 18 18 C 1.37855 * 121.57023 * 0.02562 * 17 16 10 19 19 C 1.38070 * 121.13041 * 0.02562 * 18 17 16 20 20 F 1.35106 * 119.95461 * 179.97438 * 19 18 17 21 21 H 0.96999 * 119.99827 * 359.97438 * 1 2 3 22 22 H 1.08002 * 122.33814 * 0.27130 * 11 10 9 23 23 H 1.08001 * 120.00215 * 179.97438 * 13 12 11 24 24 H 1.08002 * 119.21746 * 179.97438 * 17 16 10 25 25 H 1.08000 * 119.43745 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3828 2.1072 -1.3947 5 1 1.4952 2.6198 0.8030 6 1 3.5873 1.4118 0.5917 7 6 2.0081 -1.2148 0.0005 8 1 3.0220 -1.2532 -0.3695 9 6 1.3927 -2.3796 0.4816 10 6 1.6937 -3.6949 -0.1310 11 6 2.5505 -3.9917 -1.1856 12 6 2.6190 -5.3056 -1.5270 13 6 3.4239 -5.8306 -2.5675 14 8 4.1208 -5.0886 -3.2293 15 16 1.5666 -6.2584 -0.4953 16 6 1.0519 -4.8252 0.3885 17 6 0.1563 -4.6929 1.4561 18 6 -0.1179 -3.4652 2.0201 19 6 0.4827 -2.3140 1.5510 20 9 0.1962 -1.1231 2.1211 21 1 -0.4850 0.8401 0.0004 22 1 3.1252 -3.2319 -1.6944 23 1 3.4185 -6.8911 -2.7718 24 1 -0.3321 -5.5734 1.8467 25 1 -0.8145 -3.4029 2.8431 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396289404.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:09 Heat of formation + Delta-G solvation = -45.587749 kcal Electronic energy + Delta-G solvation = -15257.047479 eV Core-core repulsion = 12434.268352 eV Total energy + Delta-G solvation = -2822.779127 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.26366 -38.68437 -37.66551 -34.42571 -33.71266 -30.29371 -28.78371 -25.97455 -24.38218 -22.09280 -20.82596 -19.03951 -18.15156 -16.96174 -15.84230 -15.52675 -15.27312 -15.07448 -14.07273 -13.95846 -13.74414 -13.70340 -13.01655 -12.72142 -12.24079 -11.98258 -11.81792 -11.70681 -11.35990 -10.98945 -10.75471 -10.14267 -9.98664 -9.86277 -9.49031 -9.29614 -8.41438 -7.56657 -7.45845 -6.95910 -4.83624 0.96819 2.33961 2.38727 2.66218 2.78472 2.82300 2.85917 2.92072 3.55800 3.67033 4.08093 4.89601 4.98476 5.60651 5.74738 5.91244 6.06757 6.17646 6.44255 6.58279 6.61180 6.77580 6.87932 7.24007 7.32694 7.35308 7.53194 7.87005 8.04003 8.08270 8.32128 9.50145 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023144 B = 0.008829 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.543191 B = 3170.597290 C = 4251.678475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.068 3.932 3 Si 0.921 3.079 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.397 4.397 8 H 0.101 0.899 9 C 0.125 3.875 10 C -0.193 4.193 11 C 0.045 3.955 12 C -0.378 4.378 13 C 0.411 3.589 14 O -0.498 6.498 15 S 0.042 5.958 16 C -0.050 4.050 17 C -0.216 4.216 18 C -0.073 4.073 19 C 0.004 3.996 20 F -0.143 7.143 21 H 0.298 0.702 22 H 0.136 0.864 23 H 0.082 0.918 24 H 0.106 0.894 25 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.220 -2.931 1.433 3.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.342 5.342 2 C -0.160 4.160 3 Si 0.743 3.257 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.175 1.175 7 C -0.421 4.421 8 H 0.119 0.881 9 C 0.119 3.881 10 C -0.198 4.198 11 C 0.014 3.986 12 C -0.493 4.493 13 C 0.276 3.724 14 O -0.378 6.378 15 S 0.304 5.696 16 C -0.166 4.166 17 C -0.243 4.243 18 C -0.095 4.095 19 C -0.019 4.019 20 F -0.122 7.122 21 H 0.110 0.890 22 H 0.154 0.846 23 H 0.098 0.902 24 H 0.124 0.876 25 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.078 -3.940 1.067 4.083 hybrid contribution 0.232 2.259 0.153 2.276 sum 0.310 -1.681 1.220 2.100 Atomic orbital electron populations 1.69681 1.08425 1.31816 1.24295 1.26196 0.94905 1.02514 0.92373 0.86027 0.80985 0.78924 0.79747 1.18743 1.19173 1.17530 1.19823 1.00550 0.91449 1.30290 0.88104 1.18344 0.89771 0.90666 0.89352 1.18737 1.06454 0.93120 1.01491 1.20439 0.91772 0.94584 0.91762 1.23077 1.16293 0.97738 1.12219 1.21378 0.77630 0.93562 0.79795 1.90514 1.37108 1.63567 1.46627 1.83261 1.45041 1.09687 1.31592 1.22567 0.99949 0.94898 0.99163 1.19339 1.06683 0.96494 1.01814 1.20432 0.98182 0.91660 0.99231 1.17292 1.06091 0.80213 0.98275 1.91337 1.92604 1.44857 1.83372 0.89033 0.84592 0.90204 0.87594 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -16.97 11.16 55.57 0.62 -16.35 15 2 C 0.07 1.54 4.40 -17.28 -0.08 1.46 15 3 Si 0.92 16.78 29.62 -169.99 -5.04 11.75 15 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 5 H -0.27 -4.77 7.11 56.52 0.40 -4.37 15 6 H -0.25 -4.57 7.11 56.52 0.40 -4.17 15 7 C -0.40 -9.45 8.63 -38.07 -0.33 -9.78 15 8 H 0.10 2.27 7.89 -52.48 -0.41 1.86 15 9 C 0.13 3.08 5.61 -104.18 -0.58 2.49 15 10 C -0.19 -4.51 6.00 -104.84 -0.63 -5.14 15 11 C 0.05 0.99 9.44 -40.10 -0.38 0.62 15 12 C -0.38 -7.53 6.19 -39.11 -0.24 -7.77 15 13 C 0.41 7.44 11.46 32.03 0.37 7.80 15 14 O -0.50 -10.50 17.46 5.44 0.09 -10.40 15 15 S 0.04 0.77 23.23 -107.50 -2.50 -1.73 15 16 C -0.05 -1.08 6.49 -38.28 -0.25 -1.33 15 17 C -0.22 -4.46 10.01 -39.07 -0.39 -4.85 15 18 C -0.07 -1.55 9.93 -39.78 -0.39 -1.94 15 19 C 0.00 0.10 6.69 -38.77 -0.26 -0.15 15 20 F -0.14 -3.48 14.13 2.25 0.03 -3.45 15 21 H 0.30 6.24 8.29 -40.82 -0.34 5.90 15 22 H 0.14 2.97 7.84 -52.49 -0.41 2.56 15 23 H 0.08 1.14 8.06 -52.49 -0.42 0.71 15 24 H 0.11 1.90 8.06 -52.49 -0.42 1.48 15 25 H 0.11 2.06 8.06 -52.49 -0.42 1.64 15 LS Contribution 249.97 15.07 3.77 3.77 Total: -1.00 -26.28 249.97 -7.41 -33.69 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -1.23 Total: 1.32 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -3.17 Total: -18.59 kcal Atomic # 7 Polarization: -16.97 SS G_CDS: 0.62 Total: -16.35 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.03 Total: -3.45 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.04 Total: 11.75 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.50 Total: -1.73 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -26.28 -7.41 -33.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396289404.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.899 kcal (2) G-P(sol) polarization free energy of solvation -26.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds