Wall clock time and date at job start Mon Mar 30 2020 06:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86796 * 120.00275 * 2 1 4 4 H 1.48497 * 109.46957 * 274.99469 * 3 2 1 5 5 H 1.48493 * 109.47263 * 34.99732 * 3 2 1 6 6 H 1.48506 * 109.47126 * 154.99888 * 3 2 1 7 7 C 1.40271 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00209 * 156.69429 * 7 2 1 9 9 C 1.40239 * 120.00264 * 336.69142 * 7 2 1 10 10 C 1.48189 * 120.41693 * 145.70030 * 9 7 2 11 11 C 1.39086 * 128.89962 * 359.97438 * 10 9 7 12 12 C 1.35927 * 115.32482 * 179.97438 * 11 10 9 13 13 C 1.41636 * 124.84906 * 179.97438 * 12 11 10 14 14 O 1.21416 * 120.00589 * 0.02562 * 13 12 11 15 15 S 1.75496 * 110.29991 * 0.02562 * 12 11 10 16 16 C 1.39980 * 118.04843 * 179.97438 * 10 9 7 17 17 C 1.39972 * 120.00280 * 359.97438 * 16 10 9 18 18 C 1.37855 * 121.57023 * 0.02562 * 17 16 10 19 19 C 1.38070 * 121.13041 * 0.02562 * 18 17 16 20 20 F 1.35106 * 119.95461 * 179.97438 * 19 18 17 21 21 H 0.96999 * 119.99827 * 359.97438 * 1 2 3 22 22 H 1.08002 * 122.33814 * 0.27130 * 11 10 9 23 23 H 1.08001 * 120.00215 * 179.97438 * 13 12 11 24 24 H 1.08002 * 119.21746 * 179.97438 * 17 16 10 25 25 H 1.08000 * 119.43745 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3828 2.1072 -1.3947 5 1 1.4952 2.6198 0.8030 6 1 3.5873 1.4118 0.5917 7 6 2.0081 -1.2148 0.0005 8 1 3.0220 -1.2532 -0.3695 9 6 1.3927 -2.3796 0.4816 10 6 1.6937 -3.6949 -0.1310 11 6 2.5505 -3.9917 -1.1856 12 6 2.6190 -5.3056 -1.5270 13 6 3.4239 -5.8306 -2.5675 14 8 4.1208 -5.0886 -3.2293 15 16 1.5666 -6.2584 -0.4953 16 6 1.0519 -4.8252 0.3885 17 6 0.1563 -4.6929 1.4561 18 6 -0.1179 -3.4652 2.0201 19 6 0.4827 -2.3140 1.5510 20 9 0.1962 -1.1231 2.1211 21 1 -0.4850 0.8401 0.0004 22 1 3.1252 -3.2319 -1.6944 23 1 3.4185 -6.8911 -2.7718 24 1 -0.3321 -5.5734 1.8467 25 1 -0.8145 -3.4029 2.8431 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396289404.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:09 Heat of formation + Delta-G solvation = -58.900799 kcal Electronic energy + Delta-G solvation = -15257.624776 eV Core-core repulsion = 12434.268352 eV Total energy + Delta-G solvation = -2823.356425 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.03843 -40.31057 -39.31269 -36.08101 -35.37594 -31.98039 -30.44112 -27.64784 -26.03110 -23.75914 -22.46142 -20.68781 -19.82737 -18.57580 -17.50358 -17.17263 -16.93051 -16.64862 -15.82418 -15.61971 -15.33355 -15.31374 -14.60001 -14.37933 -13.93728 -13.61414 -13.46330 -13.41207 -12.88740 -12.59204 -12.22403 -11.76679 -11.61974 -11.52383 -11.13731 -10.84817 -10.07948 -9.24208 -9.09576 -8.56088 -6.56750 -0.67851 0.65724 0.78337 1.02206 1.13247 1.31067 1.40241 1.48529 2.05557 2.08060 2.42940 3.17906 3.54463 3.97421 4.15052 4.26980 4.49336 4.54317 4.78427 4.92034 4.96329 5.15095 5.19091 5.56242 5.61949 5.69203 5.84072 6.16636 6.37276 6.58163 6.61578 7.91258 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023144 B = 0.008829 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.543191 B = 3170.597290 C = 4251.678475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.036 3.964 3 Si 0.985 3.015 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.254 1.254 7 C -0.439 4.439 8 H 0.096 0.904 9 C 0.099 3.901 10 C -0.209 4.209 11 C 0.013 3.987 12 C -0.373 4.373 13 C 0.418 3.582 14 O -0.524 6.524 15 S 0.134 5.866 16 C -0.083 4.083 17 C -0.212 4.212 18 C -0.069 4.069 19 C -0.037 4.037 20 F -0.154 7.154 21 H 0.304 0.696 22 H 0.124 0.876 23 H 0.142 0.858 24 H 0.140 0.860 25 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 -5.268 1.155 5.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.188 4.188 3 Si 0.804 3.196 4 H -0.179 1.179 5 H -0.184 1.184 6 H -0.177 1.177 7 C -0.464 4.464 8 H 0.114 0.886 9 C 0.093 3.907 10 C -0.214 4.214 11 C -0.019 4.019 12 C -0.489 4.489 13 C 0.284 3.716 14 O -0.405 6.405 15 S 0.399 5.601 16 C -0.199 4.199 17 C -0.238 4.238 18 C -0.091 4.091 19 C -0.061 4.061 20 F -0.133 7.133 21 H 0.116 0.884 22 H 0.141 0.859 23 H 0.159 0.841 24 H 0.158 0.842 25 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.208 -6.314 0.793 6.367 hybrid contribution 0.230 2.608 0.134 2.622 sum 0.438 -3.706 0.927 3.845 Atomic orbital electron populations 1.69700 1.09686 1.32842 1.26165 1.26958 0.95451 1.05098 0.91293 0.85109 0.79460 0.75012 0.80043 1.17865 1.18362 1.17705 1.19960 1.00870 0.92656 1.32929 0.88578 1.18709 0.90536 0.91622 0.89829 1.19018 1.06882 0.93588 1.01924 1.20464 0.93070 0.95703 0.92665 1.23719 1.15509 0.97498 1.12130 1.22170 0.75779 0.95602 0.78057 1.90524 1.37844 1.64955 1.47188 1.82850 1.42419 1.06089 1.28742 1.23043 1.00350 0.96447 1.00074 1.19748 1.05822 0.97292 1.00979 1.20780 0.97755 0.91114 0.99460 1.17608 1.08201 0.80791 0.99453 1.91283 1.92843 1.45634 1.83535 0.88416 0.85853 0.84146 0.84222 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -37.50 11.16 21.88 0.24 -37.26 15 2 C 0.04 1.70 4.40 85.36 0.38 2.07 15 3 Si 0.99 35.61 29.62 68.60 2.03 37.64 15 4 H -0.25 -8.73 7.11 99.48 0.71 -8.03 15 5 H -0.26 -8.93 7.11 99.48 0.71 -8.23 15 6 H -0.25 -9.08 7.11 99.48 0.71 -8.37 15 7 C -0.44 -22.19 8.63 23.25 0.20 -21.99 15 8 H 0.10 4.67 7.89 -2.91 -0.02 4.65 15 9 C 0.10 5.10 5.61 -19.58 -0.11 4.99 15 10 C -0.21 -9.89 6.00 -20.01 -0.12 -10.01 15 11 C 0.01 0.56 9.44 21.94 0.21 0.77 15 12 C -0.37 -13.91 6.19 22.57 0.14 -13.77 15 13 C 0.42 13.58 11.46 68.66 0.79 14.37 15 14 O -0.52 -20.99 17.46 -3.45 -0.06 -21.05 15 15 S 0.13 4.44 23.23 -56.49 -1.31 3.13 15 16 C -0.08 -3.46 6.49 23.11 0.15 -3.31 15 17 C -0.21 -8.32 10.01 22.60 0.23 -8.09 15 18 C -0.07 -2.90 9.93 22.14 0.22 -2.68 15 19 C -0.04 -1.85 6.69 22.80 0.15 -1.70 15 20 F -0.15 -7.83 14.13 44.97 0.64 -7.20 15 21 H 0.30 13.31 8.29 -92.71 -0.77 12.54 15 22 H 0.12 5.64 7.84 -2.91 -0.02 5.62 15 23 H 0.14 3.07 8.06 -2.91 -0.02 3.04 15 24 H 0.14 4.45 8.06 -2.91 -0.02 4.43 15 25 H 0.14 4.91 8.06 -2.91 -0.02 4.89 15 Total: -1.00 -58.55 249.97 5.00 -53.55 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.24 Total: 10.54 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 2.23 Total: -39.36 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.24 Total: -37.26 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.06 Total: -21.05 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.64 Total: -7.20 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.31 Total: 3.13 kcal Total: -58.55 5.00 -53.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396289404.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.350 kcal (2) G-P(sol) polarization free energy of solvation -58.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds