Wall clock time and date at job start Mon Mar 30 2020 06:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30918 * 1 3 3 Si 1.86796 * 120.00004 * 2 1 4 4 H 1.48496 * 109.47166 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46848 * 299.99793 * 3 2 1 6 6 H 1.48501 * 109.47231 * 59.99673 * 3 2 1 7 7 C 1.39881 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99714 * 200.01759 * 7 2 1 9 9 C 1.40930 * 119.99954 * 20.01996 * 7 2 1 10 10 C 1.42325 * 120.00272 * 216.85303 * 9 7 2 11 11 S 1.75963 * 130.29453 * 359.97438 * 10 9 7 12 12 C 1.75279 * 92.20719 * 180.02562 * 11 10 9 13 13 C 1.31765 * 111.40272 * 359.97438 * 12 11 10 14 14 C 1.39627 * 119.99537 * 179.97438 * 10 9 7 15 15 C 1.40922 * 119.27386 * 359.71970 * 14 10 9 16 16 C 1.39394 * 120.83462 * 0.55604 * 15 14 10 17 17 C 1.46830 * 119.85165 * 179.71724 * 16 15 14 18 18 O 1.21296 * 119.99886 * 179.72291 * 17 16 15 19 19 C 1.40050 * 120.28681 * 359.44313 * 16 15 14 20 20 F 1.35108 * 120.18764 * 180.25255 * 19 16 15 21 21 H 0.96997 * 119.99849 * 0.02562 * 1 2 3 22 22 H 1.08001 * 124.30173 * 179.97438 * 12 11 10 23 23 H 1.07987 * 122.55075 * 180.02562 * 13 12 11 24 24 H 1.07998 * 119.58140 * 180.29723 * 15 14 10 25 25 H 1.07993 * 120.00441 * 359.72896 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.7031 1.3464 0.0006 5 1 1.8844 2.3963 -1.2125 6 1 1.8844 2.3965 1.2125 7 6 2.0086 -1.2114 0.0005 8 1 3.0396 -1.2395 0.3207 9 6 1.3678 -2.3952 -0.4168 10 6 1.6533 -3.6272 0.2362 11 16 2.7422 -3.9814 1.5723 12 6 2.3262 -5.6839 1.5488 13 6 1.4408 -5.9497 0.6100 14 6 1.0179 -4.7998 -0.1771 15 6 0.0923 -4.7449 -1.2382 16 6 -0.1848 -3.5405 -1.8829 17 6 -1.1485 -3.5091 -2.9903 18 8 -1.3954 -2.4616 -3.5499 19 6 0.4478 -2.3593 -1.4754 20 9 0.1739 -1.1921 -2.0984 21 1 -0.4850 0.8400 -0.0004 22 1 2.7428 -6.4215 2.2189 23 1 1.0578 -6.9445 0.4374 24 1 -0.4056 -5.6481 -1.5587 25 1 -1.6376 -4.4185 -3.3064 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396289777.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:49 Heat of formation + Delta-G solvation = -40.976061 kcal Electronic energy + Delta-G solvation = -15559.838190 eV Core-core repulsion = 12737.259041 eV Total energy + Delta-G solvation = -2822.579150 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.09570 -38.55074 -37.52818 -34.57558 -33.26529 -30.57734 -28.11329 -25.64815 -24.06511 -21.93656 -21.16161 -19.21295 -17.63991 -16.81280 -15.87855 -15.55831 -15.00312 -14.78581 -14.15929 -14.12332 -13.59341 -13.11033 -13.00103 -12.40682 -12.24421 -11.97397 -11.82153 -11.47422 -11.23947 -10.98474 -10.63242 -10.23889 -9.89964 -9.80302 -9.28737 -8.92776 -8.45553 -7.39654 -7.08433 -6.82918 -4.60683 1.55167 1.72033 2.45641 2.85352 2.98664 3.03898 3.08998 3.22863 3.31776 3.84367 4.41463 4.92210 5.04804 5.33001 5.60981 5.84187 5.94153 6.10527 6.32280 6.50907 6.74910 6.88479 6.93412 7.17917 7.23082 7.34147 7.73202 8.10527 8.13757 8.43514 8.54770 9.98125 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.017616 B = 0.012295 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.062690 B = 2276.803618 C = 3737.645496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.456 4.456 8 H 0.090 0.910 9 C 0.104 3.896 10 C -0.166 4.166 11 S 0.064 5.936 12 C -0.216 4.216 13 C -0.117 4.117 14 C -0.074 4.074 15 C -0.139 4.139 16 C -0.193 4.193 17 C 0.380 3.620 18 O -0.464 6.464 19 C 0.097 3.903 20 F -0.116 7.116 21 H 0.289 0.711 22 H 0.153 0.847 23 H 0.130 0.870 24 H 0.114 0.886 25 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -6.861 1.163 7.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.483 4.483 8 H 0.108 0.892 9 C 0.097 3.903 10 C -0.282 4.282 11 S 0.327 5.673 12 C -0.350 4.350 13 C -0.149 4.149 14 C -0.081 4.081 15 C -0.161 4.161 16 C -0.197 4.197 17 C 0.239 3.761 18 O -0.338 6.338 19 C 0.072 3.928 20 F -0.094 7.094 21 H 0.100 0.900 22 H 0.170 0.830 23 H 0.148 0.852 24 H 0.132 0.868 25 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.475 -5.287 1.795 6.107 hybrid contribution -0.723 -0.109 -0.731 1.034 sum 1.752 -5.395 1.063 5.771 Atomic orbital electron populations 1.69772 1.07870 1.30584 1.30300 1.25863 0.94746 1.01618 0.92393 0.86150 0.80930 0.80393 0.78858 1.18092 1.19257 1.19707 1.19376 0.99218 0.91003 1.38729 0.89181 1.16784 0.92146 0.91122 0.90235 1.22568 1.06359 0.97131 1.02150 1.83718 1.46948 1.00572 1.36105 1.24909 1.05150 1.00347 1.04608 1.20862 0.99189 0.98267 0.96568 1.18907 0.99572 0.91379 0.98201 1.20113 1.01951 0.95508 0.98539 1.20328 1.03253 0.94058 1.02023 1.23815 0.79613 0.91859 0.80764 1.90525 1.56927 1.35378 1.50987 1.17682 1.01043 0.80201 0.93881 1.91422 1.91930 1.45925 1.80094 0.89997 0.82981 0.85217 0.86839 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.17 11.13 55.55 0.62 -19.56 15 2 C 0.08 1.92 4.48 -17.33 -0.08 1.85 15 3 Si 0.91 18.95 29.60 -169.99 -5.03 13.91 15 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 15 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 7 C -0.46 -11.82 8.63 -37.95 -0.33 -12.15 15 8 H 0.09 2.24 7.92 -52.49 -0.42 1.83 15 9 C 0.10 2.70 5.42 -106.53 -0.58 2.12 15 10 C -0.17 -3.87 6.37 -37.49 -0.24 -4.11 15 11 S 0.06 1.26 22.93 -107.50 -2.47 -1.21 15 12 C -0.22 -3.57 11.02 28.84 0.32 -3.25 15 13 C -0.12 -2.01 10.39 -38.53 -0.40 -2.41 15 14 C -0.07 -1.54 6.02 -105.42 -0.63 -2.17 15 15 C -0.14 -2.75 9.81 -38.14 -0.37 -3.12 15 16 C -0.19 -4.30 5.85 -105.31 -0.62 -4.92 15 17 C 0.38 7.44 11.42 34.21 0.39 7.84 15 18 O -0.46 -10.88 16.12 5.54 0.09 -10.79 15 19 C 0.10 2.53 6.65 -38.13 -0.25 2.28 15 20 F -0.12 -3.23 12.48 2.25 0.03 -3.20 15 21 H 0.29 7.00 8.30 -40.82 -0.34 6.66 15 22 H 0.15 1.96 8.06 -52.49 -0.42 1.53 15 23 H 0.13 1.79 8.06 -52.49 -0.42 1.37 15 24 H 0.11 1.78 8.06 -52.49 -0.42 1.36 15 25 H 0.09 1.27 8.06 -52.49 -0.42 0.84 15 LS Contribution 248.08 15.07 3.74 3.74 Total: -1.00 -29.54 248.08 -7.06 -36.60 By element: Atomic # 1 Polarization: -0.20 SS G_CDS: -1.24 Total: -1.44 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.79 Total: -18.05 kcal Atomic # 7 Polarization: -20.17 SS G_CDS: 0.62 Total: -19.56 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.03 Total: -3.20 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.91 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.47 Total: -1.21 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.54 -7.06 -36.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396289777.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.378 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds