Wall clock time and date at job start Mon Mar 30 2020 06:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86798 * 120.00213 * 2 1 4 4 H 1.48497 * 109.47399 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46736 * 299.99719 * 3 2 1 6 6 H 1.48500 * 109.47411 * 59.99323 * 3 2 1 7 7 C 1.40214 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99737 * 163.19134 * 7 2 1 9 9 C 1.40302 * 120.00310 * 343.46328 * 7 2 1 10 10 C 1.40226 * 120.56344 * 333.67799 * 9 7 2 11 11 C 1.39086 * 120.57285 * 179.76454 * 10 9 7 12 12 S 1.76250 * 129.70202 * 180.20387 * 11 10 9 13 13 C 1.75420 * 91.59967 * 180.28686 * 12 11 10 14 14 C 1.32479 * 110.88978 * 0.02562 * 13 12 11 15 15 C 1.40492 * 121.00148 * 0.52012 * 11 10 9 16 16 C 1.41665 * 119.75176 * 359.74566 * 15 11 10 17 17 F 1.35102 * 119.68475 * 180.02562 * 16 15 11 18 18 C 1.38820 * 120.63438 * 359.97438 * 16 15 11 19 19 C 1.41785 * 120.41632 * 179.97438 * 18 16 15 20 20 O 1.21405 * 119.99820 * 0.03051 * 19 18 16 21 21 H 0.97002 * 120.00301 * 0.02562 * 1 2 3 22 22 H 1.07995 * 119.71382 * 359.97438 * 10 9 7 23 23 H 1.07997 * 124.55416 * 179.97438 * 13 12 11 24 24 H 1.07997 * 122.05028 * 180.02562 * 14 13 12 25 25 H 1.07992 * 120.00126 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3464 0.0006 5 1 1.8821 2.3963 -1.2126 6 1 1.8821 2.3965 1.2124 7 6 2.0079 -1.2143 0.0005 8 1 3.0533 -1.2344 -0.2699 9 6 1.3500 -2.4041 0.3469 10 6 0.2297 -2.3800 1.1899 11 6 -0.4257 -3.5589 1.5295 12 16 -1.8398 -3.8066 2.5518 13 6 -1.7796 -5.5415 2.2992 14 6 -0.7683 -5.8689 1.5084 15 6 0.0221 -4.8003 1.0477 16 6 1.1546 -4.8579 0.1985 17 9 1.5837 -6.0523 -0.2644 18 6 1.8270 -3.6985 -0.1634 19 6 2.9602 -3.7615 -1.0132 20 8 3.3478 -4.8341 -1.4295 21 1 -0.4851 0.8400 -0.0004 22 1 -0.1294 -1.4376 1.5762 23 1 -2.4731 -6.2478 2.7310 24 1 -0.5641 -6.8931 1.2334 25 1 3.4785 -2.8555 -1.2901 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396290578.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:41 Heat of formation + Delta-G solvation = -65.473025 kcal Electronic energy + Delta-G solvation = -15366.249403 eV Core-core repulsion = 12542.607986 eV Total energy + Delta-G solvation = -2823.641418 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.86377 -40.25290 -39.07990 -36.95539 -34.73998 -31.48480 -30.91995 -27.67387 -25.59207 -23.91830 -22.46393 -20.88559 -19.87880 -18.63774 -17.64722 -16.99940 -16.90156 -16.62186 -16.48063 -15.95150 -15.02959 -14.95475 -14.81342 -14.20824 -14.07054 -13.79096 -13.56891 -13.09543 -12.89148 -12.60213 -12.15659 -11.91551 -11.70858 -11.61734 -11.06567 -10.41778 -10.30207 -9.40086 -8.99404 -8.59944 -6.63181 -0.19496 0.05627 0.83328 1.26452 1.29668 1.44581 1.62559 1.69229 1.82280 2.13451 2.48300 3.27694 3.40714 3.78484 4.17848 4.32975 4.45931 4.50042 4.72428 4.89661 5.05303 5.13863 5.20351 5.49448 5.60300 5.70623 5.81131 6.21528 6.40923 6.51612 6.82641 7.93817 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.019850 B = 0.009804 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.275783 B = 2855.393735 C = 4186.290120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.036 3.964 3 Si 0.997 3.003 4 H -0.245 1.245 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.411 4.411 8 H 0.118 0.882 9 C 0.145 3.855 10 C -0.179 4.179 11 C -0.063 4.063 12 S 0.038 5.962 13 C -0.233 4.233 14 C -0.091 4.091 15 C -0.275 4.275 16 C 0.217 3.783 17 F -0.138 7.138 18 C -0.356 4.356 19 C 0.389 3.611 20 O -0.542 6.542 21 H 0.307 0.693 22 H 0.125 0.875 23 H 0.191 0.809 24 H 0.141 0.859 25 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.396 2.620 3.187 4.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.188 4.188 3 Si 0.815 3.185 4 H -0.167 1.167 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.436 4.436 8 H 0.135 0.865 9 C 0.138 3.862 10 C -0.206 4.206 11 C -0.178 4.178 12 S 0.297 5.703 13 C -0.365 4.365 14 C -0.120 4.120 15 C -0.281 4.281 16 C 0.195 3.805 17 F -0.116 7.116 18 C -0.359 4.359 19 C 0.259 3.741 20 O -0.426 6.426 21 H 0.119 0.881 22 H 0.142 0.858 23 H 0.208 0.792 24 H 0.159 0.841 25 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.422 2.967 3.784 5.384 hybrid contribution 0.907 -0.639 -0.883 1.418 sum -1.515 2.328 2.901 4.017 Atomic orbital electron populations 1.69764 1.09738 1.32972 1.26645 1.27178 0.95561 1.05440 0.90641 0.84888 0.79901 0.74333 0.79342 1.16723 1.18666 1.18657 1.20285 0.99320 0.90577 1.33457 0.86451 1.18450 0.90040 0.90420 0.87306 1.20658 1.00616 0.94993 1.04329 1.22602 0.98944 0.96115 1.00152 1.83651 1.29067 1.03788 1.53790 1.25014 1.05221 0.97782 1.08455 1.19901 0.95036 0.98797 0.98219 1.17927 1.03096 0.94467 1.12584 1.18219 0.91350 0.79681 0.91205 1.91417 1.88983 1.44751 1.86498 1.20686 1.07579 0.93256 1.14407 1.22494 0.82511 0.92713 0.76408 1.90466 1.65935 1.35177 1.50999 0.88072 0.85774 0.79191 0.84090 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -32.47 11.00 21.87 0.24 -32.23 15 2 C 0.04 1.39 5.15 85.34 0.44 1.83 15 3 Si 1.00 28.97 29.59 68.60 2.03 31.00 15 4 H -0.24 -6.80 7.11 99.48 0.71 -6.09 15 5 H -0.26 -7.43 7.11 99.48 0.71 -6.72 15 6 H -0.26 -7.50 7.11 99.48 0.71 -6.79 15 7 C -0.41 -17.43 8.45 23.25 0.20 -17.23 15 8 H 0.12 4.43 6.65 -2.91 -0.02 4.41 15 9 C 0.15 6.88 5.71 -19.97 -0.11 6.77 15 10 C -0.18 -8.53 8.70 22.96 0.20 -8.33 15 11 C -0.06 -2.88 6.44 23.02 0.15 -2.73 15 12 S 0.04 1.41 23.29 -56.49 -1.32 0.10 15 13 C -0.23 -7.88 11.08 66.69 0.74 -7.14 15 14 C -0.09 -3.54 10.01 21.73 0.22 -3.32 15 15 C -0.28 -12.74 5.87 -21.29 -0.12 -12.86 15 16 C 0.22 10.65 7.34 23.26 0.17 10.82 15 17 F -0.14 -6.78 15.27 44.97 0.69 -6.10 15 18 C -0.36 -17.10 5.89 -19.94 -0.12 -17.22 15 19 C 0.39 17.32 10.83 68.70 0.74 18.06 15 20 O -0.54 -26.90 15.97 -3.42 -0.05 -26.96 15 21 H 0.31 11.34 8.29 -92.71 -0.77 10.57 15 22 H 0.12 5.93 6.22 -2.91 -0.02 5.91 15 23 H 0.19 4.82 8.06 -2.91 -0.02 4.79 15 24 H 0.14 4.91 8.06 -2.91 -0.02 4.88 15 25 H 0.12 4.47 6.57 -2.91 -0.02 4.45 15 Total: -1.00 -55.46 245.77 5.33 -50.12 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 1.25 Total: 15.41 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 2.50 Total: -31.35 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.24 Total: -32.23 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.96 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.69 Total: -6.10 kcal Atomic # 14 Polarization: 28.97 SS G_CDS: 2.03 Total: 31.00 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -1.32 Total: 0.10 kcal Total: -55.46 5.33 -50.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396290578.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.349 kcal (2) G-P(sol) polarization free energy of solvation -55.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds