Wall clock time and date at job start Mon Mar 30 2020 06:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31125 * 1 3 3 Si 1.86796 * 120.00089 * 2 1 4 4 H 1.48497 * 109.47449 * 240.00048 * 3 2 1 5 5 H 1.48504 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47286 * 119.99950 * 3 2 1 7 7 C 1.39682 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00017 * 199.92849 * 7 2 1 9 9 C 1.40780 * 120.00174 * 19.93244 * 7 2 1 10 10 C 1.37126 * 123.31620 * 31.99882 * 9 7 2 11 11 F 1.35099 * 124.04772 * 0.02562 * 10 9 7 12 12 S 1.69968 * 111.90687 * 180.26587 * 10 9 7 13 13 C 1.75787 * 93.25197 * 359.69937 * 12 10 9 14 14 C 1.39255 * 130.04702 * 180.02562 * 13 12 10 15 15 C 1.39488 * 120.11805 * 180.29344 * 14 13 12 16 16 C 1.46826 * 120.09744 * 179.97438 * 15 14 13 17 17 O 1.21312 * 120.00212 * 0.02562 * 16 15 14 18 18 C 1.40373 * 119.80231 * 0.02562 * 15 14 13 19 19 C 1.35902 * 120.20230 * 359.97438 * 18 15 14 20 20 C 1.39692 * 110.26121 * 0.29910 * 13 12 10 21 21 H 0.96996 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.08005 * 119.93808 * 0.29392 * 14 13 12 23 23 H 1.08004 * 120.00276 * 180.02562 * 16 15 14 24 24 H 1.07996 * 119.90001 * 179.97438 * 18 15 14 25 25 H 1.08000 * 119.65737 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 14 2.2453 1.6177 0.0000 4 1 3.0990 1.6964 -1.2125 5 1 1.2802 2.7464 0.0006 6 1 3.0990 1.6964 1.2125 7 6 2.0096 -1.2097 0.0005 8 1 3.0411 -1.2376 0.3194 9 6 1.3690 -2.3926 -0.4146 10 6 0.3891 -2.4218 -1.3734 11 9 -0.0672 -1.3281 -2.0222 12 16 -0.1872 -3.9978 -1.6433 13 6 0.8978 -4.7056 -0.4550 14 6 1.0517 -6.0321 -0.0602 15 6 1.9854 -6.3667 0.9205 16 6 2.1469 -7.7654 1.3369 17 8 1.4681 -8.6321 0.8275 18 6 2.7695 -5.3620 1.5090 19 6 2.6214 -4.0666 1.1255 20 6 1.6826 -3.7124 0.1356 21 1 -0.4850 0.8400 0.0004 22 1 0.4469 -6.8033 -0.5142 23 1 2.8701 -8.0226 2.0967 24 1 3.4927 -5.6191 2.2687 25 1 3.2289 -3.3006 1.5844 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396291124.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:30 Heat of formation + Delta-G solvation = -42.937440 kcal Electronic energy + Delta-G solvation = -15110.578333 eV Core-core repulsion = 12287.914132 eV Total energy + Delta-G solvation = -2822.664201 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.86288 -39.40468 -37.95378 -34.76328 -32.58361 -30.55990 -28.86130 -26.15507 -23.97479 -22.33133 -20.82655 -19.90833 -17.60965 -17.02191 -15.99410 -15.60911 -15.25323 -14.88799 -14.12723 -14.10495 -13.84242 -13.37619 -13.33584 -13.04272 -12.40283 -12.37013 -11.79846 -11.37183 -11.20229 -11.01783 -10.53103 -10.19869 -9.95876 -9.58609 -9.44757 -9.26828 -8.71589 -7.47631 -7.02525 -6.78708 -4.48743 0.90317 1.81448 2.37443 2.52656 2.94028 3.04458 3.07066 3.16036 3.53172 3.89562 4.30084 4.50964 4.97103 5.24965 5.34818 5.45986 5.80734 5.86718 6.15691 6.38422 6.57820 6.75362 6.79168 6.99909 7.19620 7.36830 7.52524 7.63776 8.14213 8.50269 8.65913 10.12498 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.033428 B = 0.007256 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.416383 B = 3857.908847 C = 4580.980698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.070 3.930 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.434 4.434 8 H 0.084 0.916 9 C 0.050 3.950 10 C -0.164 4.164 11 F -0.107 7.107 12 S 0.063 5.937 13 C -0.158 4.158 14 C -0.015 4.015 15 C -0.209 4.209 16 C 0.389 3.611 17 O -0.478 6.478 18 C -0.091 4.091 19 C -0.088 4.088 20 C -0.011 4.011 21 H 0.284 0.716 22 H 0.127 0.873 23 H 0.099 0.901 24 H 0.126 0.874 25 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.408 -5.526 2.795 7.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.151 4.151 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.465 4.465 8 H 0.102 0.898 9 C 0.039 3.961 10 C -0.299 4.299 11 F -0.086 7.086 12 S 0.324 5.676 13 C -0.274 4.274 14 C -0.039 4.039 15 C -0.213 4.213 16 C 0.250 3.750 17 O -0.353 6.353 18 C -0.113 4.113 19 C -0.107 4.107 20 C -0.022 4.022 21 H 0.094 0.906 22 H 0.145 0.855 23 H 0.115 0.885 24 H 0.144 0.856 25 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.671 -6.231 1.491 6.942 hybrid contribution 1.174 1.973 0.890 2.462 sum 3.845 -4.258 2.381 6.212 Atomic orbital electron populations 1.69904 1.07644 1.29860 1.31950 1.25795 0.94724 1.01269 0.93277 0.86271 0.80037 0.80082 0.79878 1.18795 1.20309 1.18997 1.18801 0.98593 0.90521 1.38592 0.89778 1.17484 0.94989 0.91143 0.92467 1.20408 1.13980 0.85972 1.09573 1.91272 1.88109 1.50233 1.78971 1.82082 1.42796 0.99916 1.42757 1.22334 1.03893 0.96852 1.04282 1.20653 0.95570 0.93392 0.94243 1.20458 1.02284 0.96031 1.02515 1.23873 0.82173 0.86750 0.82232 1.90499 1.42160 1.51303 1.51368 1.20656 0.98891 0.92259 0.99534 1.20547 0.97610 0.95961 0.96598 1.19593 0.94701 0.93027 0.94903 0.90560 0.85548 0.88466 0.85615 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.41 10.95 55.54 0.61 -19.81 15 2 C 0.07 1.75 4.81 -17.31 -0.08 1.67 15 3 Si 0.91 18.72 29.60 -169.99 -5.03 13.69 15 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 15 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 6 H -0.27 -5.22 7.11 56.52 0.40 -4.81 15 7 C -0.43 -11.08 8.97 -38.08 -0.34 -11.43 15 8 H 0.08 1.99 7.92 -52.49 -0.42 1.57 15 9 C 0.05 1.27 5.54 -106.06 -0.59 0.69 15 10 C -0.16 -4.29 7.36 30.33 0.22 -4.07 15 11 F -0.11 -2.95 14.63 2.25 0.03 -2.92 15 12 S 0.06 1.39 22.96 -107.50 -2.47 -1.08 15 13 C -0.16 -3.33 6.42 -38.66 -0.25 -3.58 15 14 C -0.02 -0.28 9.62 -38.74 -0.37 -0.65 15 15 C -0.21 -3.28 5.86 -105.16 -0.62 -3.90 15 16 C 0.39 5.14 11.44 34.20 0.39 5.53 15 17 O -0.48 -7.97 17.14 5.53 0.09 -7.88 15 18 C -0.09 -1.35 9.71 -39.62 -0.38 -1.74 15 19 C -0.09 -1.60 9.78 -39.39 -0.39 -1.98 15 20 C -0.01 -0.25 6.03 -105.05 -0.63 -0.88 15 21 H 0.28 6.94 8.30 -40.82 -0.34 6.60 15 22 H 0.13 2.19 7.62 -52.48 -0.40 1.79 15 23 H 0.10 0.84 8.06 -52.48 -0.42 0.42 15 24 H 0.13 1.33 8.06 -52.49 -0.42 0.90 15 25 H 0.13 2.15 8.06 -52.49 -0.42 1.73 15 LS Contribution 250.17 15.07 3.77 3.77 Total: -1.00 -29.35 250.17 -7.25 -36.60 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: -1.22 Total: -2.03 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -3.04 Total: -20.35 kcal Atomic # 7 Polarization: -20.41 SS G_CDS: 0.61 Total: -19.81 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.09 Total: -7.88 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.03 Total: -2.92 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.47 Total: -1.08 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.35 -7.25 -36.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291124.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.340 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds