Wall clock time and date at job start Mon Mar 30 2020 06:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31125 * 1 3 3 Si 1.86796 * 120.00089 * 2 1 4 4 H 1.48497 * 109.47449 * 240.00048 * 3 2 1 5 5 H 1.48504 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47286 * 119.99950 * 3 2 1 7 7 C 1.39682 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00017 * 199.92849 * 7 2 1 9 9 C 1.40780 * 120.00174 * 19.93244 * 7 2 1 10 10 C 1.37126 * 123.31620 * 31.99882 * 9 7 2 11 11 F 1.35099 * 124.04772 * 0.02562 * 10 9 7 12 12 S 1.69968 * 111.90687 * 180.26587 * 10 9 7 13 13 C 1.75787 * 93.25197 * 359.69937 * 12 10 9 14 14 C 1.39255 * 130.04702 * 180.02562 * 13 12 10 15 15 C 1.39488 * 120.11805 * 180.29344 * 14 13 12 16 16 C 1.46826 * 120.09744 * 179.97438 * 15 14 13 17 17 O 1.21312 * 120.00212 * 0.02562 * 16 15 14 18 18 C 1.40373 * 119.80231 * 0.02562 * 15 14 13 19 19 C 1.35902 * 120.20230 * 359.97438 * 18 15 14 20 20 C 1.39692 * 110.26121 * 0.29910 * 13 12 10 21 21 H 0.96996 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.08005 * 119.93808 * 0.29392 * 14 13 12 23 23 H 1.08004 * 120.00276 * 180.02562 * 16 15 14 24 24 H 1.07996 * 119.90001 * 179.97438 * 18 15 14 25 25 H 1.08000 * 119.65737 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 14 2.2453 1.6177 0.0000 4 1 3.0990 1.6964 -1.2125 5 1 1.2802 2.7464 0.0006 6 1 3.0990 1.6964 1.2125 7 6 2.0096 -1.2097 0.0005 8 1 3.0411 -1.2376 0.3194 9 6 1.3690 -2.3926 -0.4146 10 6 0.3891 -2.4218 -1.3734 11 9 -0.0672 -1.3281 -2.0222 12 16 -0.1872 -3.9978 -1.6433 13 6 0.8978 -4.7056 -0.4550 14 6 1.0517 -6.0321 -0.0602 15 6 1.9854 -6.3667 0.9205 16 6 2.1469 -7.7654 1.3369 17 8 1.4681 -8.6321 0.8275 18 6 2.7695 -5.3620 1.5090 19 6 2.6214 -4.0666 1.1255 20 6 1.6826 -3.7124 0.1356 21 1 -0.4850 0.8400 0.0004 22 1 0.4469 -6.8033 -0.5142 23 1 2.8701 -8.0226 2.0967 24 1 3.4927 -5.6191 2.2687 25 1 3.2289 -3.3006 1.5844 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396291124.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:30 Heat of formation + Delta-G solvation = -60.149533 kcal Electronic energy + Delta-G solvation = -15111.324706 eV Core-core repulsion = 12287.914132 eV Total energy + Delta-G solvation = -2823.410574 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.84696 -40.74068 -39.30776 -36.46684 -34.31384 -31.98928 -30.43898 -27.96666 -25.38575 -23.83534 -22.30550 -21.47466 -19.15594 -18.89687 -17.48222 -16.99466 -16.86053 -16.47892 -15.88466 -15.63820 -15.22212 -14.98854 -14.90501 -14.56013 -13.98717 -13.93680 -13.43556 -13.19975 -12.86611 -12.61717 -12.14998 -11.75087 -11.53379 -11.24441 -10.99610 -10.72911 -10.30827 -9.13617 -8.85144 -8.57095 -6.42133 -0.48957 0.39348 0.74375 1.06519 1.33352 1.40613 1.45088 1.48630 1.93064 2.18390 2.80179 3.16422 3.45549 3.84843 4.02471 4.23078 4.41206 4.53172 4.78294 4.97492 5.09051 5.17634 5.25585 5.33345 5.58564 5.63211 5.98004 6.24116 6.58541 6.64636 6.74532 8.27352 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.033428 B = 0.007256 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.416383 B = 3857.908847 C = 4580.980698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.025 3.975 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.245 1.245 7 C -0.460 4.460 8 H 0.097 0.903 9 C 0.033 3.967 10 C -0.221 4.221 11 F -0.130 7.130 12 S 0.061 5.939 13 C -0.165 4.165 14 C -0.036 4.036 15 C -0.195 4.195 16 C 0.403 3.597 17 O -0.511 6.511 18 C -0.060 4.060 19 C -0.098 4.098 20 C -0.049 4.049 21 H 0.286 0.714 22 H 0.130 0.870 23 H 0.171 0.829 24 H 0.189 0.811 25 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.058 -7.187 5.281 11.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.168 1.168 7 C -0.491 4.491 8 H 0.115 0.885 9 C 0.022 3.978 10 C -0.355 4.355 11 F -0.110 7.110 12 S 0.321 5.679 13 C -0.280 4.280 14 C -0.059 4.059 15 C -0.199 4.199 16 C 0.265 3.735 17 O -0.387 6.387 18 C -0.081 4.081 19 C -0.117 4.117 20 C -0.059 4.059 21 H 0.096 0.904 22 H 0.148 0.852 23 H 0.187 0.813 24 H 0.206 0.794 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.335 -7.913 3.993 10.345 hybrid contribution 0.442 2.256 0.245 2.312 sum 5.777 -5.658 4.238 9.129 Atomic orbital electron populations 1.70000 1.09468 1.30819 1.33202 1.26796 0.95352 1.04890 0.92125 0.85188 0.78654 0.75257 0.80367 1.18957 1.19982 1.16819 1.19227 0.99303 0.91323 1.39272 0.88542 1.18012 0.94633 0.93128 0.92039 1.20899 1.16222 0.86854 1.11507 1.91183 1.88615 1.51619 1.79569 1.81716 1.43996 0.97891 1.44281 1.22494 1.03629 0.97942 1.03980 1.20881 0.97182 0.92071 0.95795 1.21126 1.00053 0.98485 1.00220 1.24664 0.82182 0.84315 0.82298 1.90526 1.43714 1.51789 1.52675 1.21250 0.98065 0.90007 0.98754 1.20860 0.96937 0.98169 0.95759 1.19773 0.97164 0.91702 0.97265 0.90354 0.85242 0.81325 0.79405 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.86 10.95 21.80 0.24 -44.63 15 2 C 0.03 1.29 4.81 85.15 0.41 1.70 15 3 Si 0.99 38.74 29.60 68.60 2.03 40.77 15 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 15 5 H -0.28 -10.55 7.11 99.48 0.71 -9.84 15 6 H -0.24 -8.74 7.11 99.48 0.71 -8.04 15 7 C -0.46 -24.14 8.97 23.24 0.21 -23.93 15 8 H 0.10 4.60 7.92 -2.91 -0.02 4.58 15 9 C 0.03 1.75 5.54 -20.80 -0.12 1.64 15 10 C -0.22 -12.27 7.36 67.56 0.50 -11.77 15 11 F -0.13 -7.75 14.63 44.97 0.66 -7.09 15 12 S 0.06 2.84 22.96 -56.49 -1.30 1.55 15 13 C -0.17 -7.06 6.42 22.87 0.15 -6.92 15 14 C -0.04 -1.26 9.62 22.82 0.22 -1.04 15 15 C -0.20 -5.25 5.86 -20.21 -0.12 -5.37 15 16 C 0.40 8.23 11.44 70.07 0.80 9.03 15 17 O -0.51 -14.96 17.14 -3.13 -0.05 -15.02 15 18 C -0.06 -1.44 9.71 22.25 0.22 -1.22 15 19 C -0.10 -3.31 9.78 22.39 0.22 -3.10 15 20 C -0.05 -2.21 6.03 -20.14 -0.12 -2.33 15 21 H 0.29 14.62 8.30 -92.71 -0.77 13.85 15 22 H 0.13 4.39 7.62 -2.91 -0.02 4.37 15 23 H 0.17 1.35 8.06 -2.91 -0.02 1.33 15 24 H 0.19 2.29 8.06 -2.91 -0.02 2.27 15 25 H 0.14 4.33 8.06 -2.91 -0.02 4.31 15 Total: -1.00 -69.76 250.17 5.18 -64.58 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: 1.24 Total: 3.14 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 2.36 Total: -43.31 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.24 Total: -44.63 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.05 Total: -15.02 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 0.66 Total: -7.09 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.30 Total: 1.55 kcal Total: -69.76 5.18 -64.58 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291124.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.432 kcal (2) G-P(sol) polarization free energy of solvation -69.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds