Wall clock time and date at job start Mon Mar 30 2020 06:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30605 * 1 3 3 Si 1.86799 * 119.99750 * 2 1 4 4 H 1.48500 * 109.46894 * 240.00096 * 3 2 1 5 5 H 1.48501 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47188 * 120.00314 * 3 2 1 7 7 C 1.40430 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99892 * 179.97438 * 7 2 1 9 9 C 1.39692 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.37395 * 124.88915 * 180.02562 * 9 7 2 11 11 C 1.38896 * 115.07179 * 179.97438 * 10 9 7 12 12 C 1.40388 * 113.11903 * 359.97438 * 11 10 9 13 13 C 1.39585 * 119.91454 * 180.02562 * 12 11 10 14 14 C 1.37680 * 121.47156 * 0.02562 * 13 12 11 15 15 C 1.38583 * 121.09701 * 359.96160 * 14 13 12 16 16 F 1.35095 * 119.91894 * 180.02562 * 15 14 13 17 17 C 1.39438 * 120.16266 * 0.03686 * 15 14 13 18 18 C 1.46204 * 120.36522 * 179.97438 * 17 15 14 19 19 O 1.21390 * 120.00271 * 0.02562 * 18 17 15 20 20 S 1.75473 * 124.89846 * 359.95668 * 9 7 2 21 21 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 22 22 H 1.07997 * 122.46360 * 359.68893 * 10 9 7 23 23 H 1.08000 * 119.26503 * 179.97438 * 13 12 11 24 24 H 1.07995 * 119.45463 * 179.97438 * 14 13 12 25 25 H 1.08007 * 119.99663 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 3.0937 1.6964 -1.2125 5 1 1.2749 2.7465 -0.0006 6 1 3.0938 1.6965 1.2124 7 6 2.0082 -1.2161 -0.0005 8 1 3.0882 -1.2161 -0.0010 9 6 1.3098 -2.4259 -0.0016 10 6 1.8928 -3.6700 -0.0017 11 6 1.0034 -4.7368 -0.0023 12 6 -0.3413 -4.3334 -0.0021 13 6 -1.3557 -5.2922 -0.0022 14 6 -1.0715 -6.6394 -0.0018 15 6 0.2374 -7.0947 -0.0022 16 9 0.4890 -8.4220 -0.0024 17 6 1.2952 -6.1863 -0.0023 18 6 2.6778 -6.6618 -0.0022 19 8 2.9099 -7.8533 -0.0025 20 16 -0.4386 -2.5757 -0.0013 21 1 -0.4850 0.8400 -0.0004 22 1 2.9639 -3.8082 -0.0059 23 1 -2.3866 -4.9702 -0.0016 24 1 -1.8820 -7.3531 -0.0014 25 1 3.4926 -5.9529 -0.0018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396291409.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:01 Heat of formation + Delta-G solvation = -67.343300 kcal Electronic energy + Delta-G solvation = -14974.335670 eV Core-core repulsion = 12150.613151 eV Total energy + Delta-G solvation = -2823.722519 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.14738 -38.49605 -37.24942 -35.28198 -33.30766 -30.13005 -29.19140 -25.98284 -23.79406 -22.42110 -20.44129 -19.55324 -18.27230 -16.48996 -16.38494 -15.66217 -15.25717 -14.88943 -14.71332 -14.09363 -13.52633 -13.39384 -13.20916 -12.58637 -12.39376 -12.25849 -11.94004 -11.72238 -11.57705 -10.86861 -10.63682 -10.48178 -10.46579 -9.56211 -9.41706 -8.88259 -8.54636 -7.68555 -7.55789 -6.67487 -5.05419 1.20920 1.96086 2.62725 2.65106 2.70617 2.97292 3.22747 3.27487 3.31710 3.54007 4.29851 4.76212 4.94250 5.17766 5.54199 5.84423 6.00109 6.21211 6.27139 6.53381 6.63239 6.86322 6.94306 7.02849 7.18407 7.38168 7.52446 7.71924 7.92203 7.99605 8.24703 9.24152 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.039727 B = 0.006448 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.635019 B = 4341.322679 C = 5036.116458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.049 3.951 3 Si 0.944 3.056 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.349 4.349 8 H 0.108 0.892 9 C 0.058 3.942 10 C -0.360 4.360 11 C 0.087 3.913 12 C -0.298 4.298 13 C 0.017 3.983 14 C -0.267 4.267 15 C 0.188 3.812 16 F -0.136 7.136 17 C -0.295 4.295 18 C 0.386 3.614 19 O -0.496 6.496 20 S 0.147 5.853 21 H 0.309 0.691 22 H 0.115 0.885 23 H 0.114 0.886 24 H 0.119 0.881 25 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.117 3.362 -0.001 3.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.177 4.177 3 Si 0.766 3.234 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.382 4.382 8 H 0.126 0.874 9 C -0.063 4.063 10 C -0.384 4.384 11 C 0.078 3.922 12 C -0.412 4.412 13 C -0.005 4.005 14 C -0.288 4.288 15 C 0.167 3.833 16 F -0.114 7.114 17 C -0.299 4.299 18 C 0.251 3.749 19 O -0.375 6.375 20 S 0.406 5.594 21 H 0.123 0.877 22 H 0.133 0.867 23 H 0.132 0.868 24 H 0.137 0.863 25 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.354 3.848 -0.001 4.511 hybrid contribution 1.360 -0.451 -0.003 1.433 sum -0.993 3.397 -0.004 3.539 Atomic orbital electron populations 1.68571 1.08130 1.32209 1.28677 1.26539 0.95241 1.03628 0.92258 0.85686 0.79785 0.77013 0.80919 1.17916 1.19355 1.17910 1.19607 0.96336 0.88532 1.33711 0.87449 1.21609 0.95383 0.95822 0.93464 1.19508 0.98333 0.89683 1.30838 1.18628 0.91999 0.90373 0.91180 1.23643 0.96191 1.02451 1.18916 1.20099 0.97181 0.90822 0.92392 1.20223 0.94077 0.96014 1.18504 1.17618 0.93434 0.76332 0.95919 1.91467 1.95261 1.31661 1.93010 1.21201 0.94263 0.92126 1.22305 1.23326 0.91139 0.90027 0.70380 1.90497 1.87842 1.20413 1.38761 1.84866 1.04389 0.91250 1.78888 0.87697 0.86704 0.86842 0.86273 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -15.27 10.59 55.57 0.59 -14.68 15 2 C 0.05 0.96 5.50 -17.25 -0.09 0.86 15 3 Si 0.94 14.53 29.56 -169.99 -5.03 9.50 15 4 H -0.26 -3.92 7.11 56.52 0.40 -3.52 15 5 H -0.27 -4.03 7.11 56.52 0.40 -3.63 15 6 H -0.26 -3.92 7.11 56.52 0.40 -3.52 15 7 C -0.35 -7.47 9.27 -38.21 -0.35 -7.83 15 8 H 0.11 2.12 7.85 -52.49 -0.41 1.70 15 9 C 0.06 1.33 6.12 -39.35 -0.24 1.09 15 10 C -0.36 -8.19 9.77 -39.65 -0.39 -8.58 15 11 C 0.09 1.99 6.01 -104.91 -0.63 1.36 15 12 C -0.30 -6.62 6.48 -38.27 -0.25 -6.87 15 13 C 0.02 0.35 10.00 -39.28 -0.39 -0.05 15 14 C -0.27 -5.27 9.94 -39.66 -0.39 -5.66 15 15 C 0.19 4.12 7.27 -39.01 -0.28 3.84 15 16 F -0.14 -3.00 15.51 2.25 0.03 -2.97 15 17 C -0.29 -6.59 6.08 -102.32 -0.62 -7.21 15 18 C 0.39 8.10 11.27 33.93 0.38 8.48 15 19 O -0.50 -11.51 16.14 5.46 0.09 -11.43 15 20 S 0.15 3.23 20.14 -107.50 -2.17 1.06 15 21 H 0.31 5.54 8.29 -40.82 -0.34 5.20 15 22 H 0.12 2.42 7.43 -52.49 -0.39 2.03 15 23 H 0.11 1.91 8.06 -52.49 -0.42 1.48 15 24 H 0.12 2.02 8.06 -52.49 -0.42 1.59 15 25 H 0.09 1.60 7.33 -52.48 -0.38 1.22 15 LS Contribution 247.98 15.07 3.74 3.74 Total: -1.00 -25.59 247.98 -7.17 -32.76 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -1.17 Total: 2.57 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -3.27 Total: -20.56 kcal Atomic # 7 Polarization: -15.27 SS G_CDS: 0.59 Total: -14.68 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.03 Total: -2.97 kcal Atomic # 14 Polarization: 14.53 SS G_CDS: -5.03 Total: 9.50 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.17 Total: 1.06 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -25.59 -7.17 -32.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291409.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.579 kcal (2) G-P(sol) polarization free energy of solvation -25.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds