Wall clock time and date at job start Mon Mar 30 2020 06:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30605 * 1 3 3 Si 1.86799 * 119.99750 * 2 1 4 4 H 1.48500 * 109.46894 * 240.00096 * 3 2 1 5 5 H 1.48501 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47188 * 120.00314 * 3 2 1 7 7 C 1.40430 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99892 * 179.97438 * 7 2 1 9 9 C 1.39692 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.37395 * 124.88915 * 180.02562 * 9 7 2 11 11 C 1.38896 * 115.07179 * 179.97438 * 10 9 7 12 12 C 1.40388 * 113.11903 * 359.97438 * 11 10 9 13 13 C 1.39585 * 119.91454 * 180.02562 * 12 11 10 14 14 C 1.37680 * 121.47156 * 0.02562 * 13 12 11 15 15 C 1.38583 * 121.09701 * 359.96160 * 14 13 12 16 16 F 1.35095 * 119.91894 * 180.02562 * 15 14 13 17 17 C 1.39438 * 120.16266 * 0.03686 * 15 14 13 18 18 C 1.46204 * 120.36522 * 179.97438 * 17 15 14 19 19 O 1.21390 * 120.00271 * 0.02562 * 18 17 15 20 20 S 1.75473 * 124.89846 * 359.95668 * 9 7 2 21 21 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 22 22 H 1.07997 * 122.46360 * 359.68893 * 10 9 7 23 23 H 1.08000 * 119.26503 * 179.97438 * 13 12 11 24 24 H 1.07995 * 119.45463 * 179.97438 * 14 13 12 25 25 H 1.08007 * 119.99663 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 3.0937 1.6964 -1.2125 5 1 1.2749 2.7465 -0.0006 6 1 3.0938 1.6965 1.2124 7 6 2.0082 -1.2161 -0.0005 8 1 3.0882 -1.2161 -0.0010 9 6 1.3098 -2.4259 -0.0016 10 6 1.8928 -3.6700 -0.0017 11 6 1.0034 -4.7368 -0.0023 12 6 -0.3413 -4.3334 -0.0021 13 6 -1.3557 -5.2922 -0.0022 14 6 -1.0715 -6.6394 -0.0018 15 6 0.2374 -7.0947 -0.0022 16 9 0.4890 -8.4220 -0.0024 17 6 1.2952 -6.1863 -0.0023 18 6 2.6778 -6.6618 -0.0022 19 8 2.9099 -7.8533 -0.0025 20 16 -0.4386 -2.5757 -0.0013 21 1 -0.4850 0.8400 -0.0004 22 1 2.9639 -3.8082 -0.0059 23 1 -2.3866 -4.9702 -0.0016 24 1 -1.8820 -7.3531 -0.0014 25 1 3.4926 -5.9529 -0.0018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396291409.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:00 Heat of formation + Delta-G solvation = -79.367940 kcal Electronic energy + Delta-G solvation = -14974.857097 eV Core-core repulsion = 12150.613151 eV Total energy + Delta-G solvation = -2824.243946 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.85570 -40.17114 -38.92911 -36.87651 -34.91678 -31.77704 -30.83220 -27.61269 -25.43624 -24.06463 -22.08599 -21.20419 -19.90440 -18.10915 -18.00735 -17.34936 -16.76710 -16.59817 -16.31435 -15.74282 -15.08733 -14.94699 -14.89812 -14.13804 -14.04332 -13.86865 -13.50201 -13.17224 -13.12605 -12.31911 -12.13499 -11.99091 -11.94549 -11.11214 -11.10785 -10.55913 -10.23070 -9.35357 -9.08051 -8.36950 -6.71082 -0.44580 0.31321 1.27762 1.30597 1.38369 1.55891 1.57958 1.79373 1.80688 2.10274 2.70252 3.08751 3.31546 3.57766 3.98962 4.26845 4.40209 4.63303 4.74278 4.90117 5.00427 5.25753 5.30871 5.38031 5.54762 5.72184 5.90871 6.08660 6.26854 6.34469 6.59139 7.76047 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.039727 B = 0.006448 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.635019 B = 4341.322679 C = 5036.116458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.017 3.983 3 Si 1.015 2.985 4 H -0.253 1.253 5 H -0.259 1.259 6 H -0.253 1.253 7 C -0.360 4.360 8 H 0.119 0.881 9 C 0.028 3.972 10 C -0.381 4.381 11 C 0.071 3.929 12 C -0.320 4.320 13 C 0.021 3.979 14 C -0.260 4.260 15 C 0.171 3.829 16 F -0.141 7.141 17 C -0.317 4.317 18 C 0.390 3.610 19 O -0.523 6.523 20 S 0.143 5.857 21 H 0.322 0.678 22 H 0.122 0.878 23 H 0.146 0.854 24 H 0.151 0.849 25 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.402 4.886 0.000 5.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.207 4.207 3 Si 0.832 3.168 4 H -0.176 1.176 5 H -0.183 1.183 6 H -0.176 1.176 7 C -0.393 4.393 8 H 0.137 0.863 9 C -0.093 4.093 10 C -0.404 4.404 11 C 0.063 3.937 12 C -0.434 4.434 13 C -0.001 4.001 14 C -0.281 4.281 15 C 0.149 3.851 16 F -0.119 7.119 17 C -0.321 4.321 18 C 0.257 3.743 19 O -0.404 6.404 20 S 0.402 5.598 21 H 0.136 0.864 22 H 0.140 0.860 23 H 0.164 0.836 24 H 0.168 0.832 25 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.657 5.352 0.000 5.975 hybrid contribution 1.389 -0.846 -0.004 1.626 sum -1.268 4.506 -0.003 4.681 Atomic orbital electron populations 1.68561 1.09386 1.33868 1.27532 1.27459 0.95878 1.06237 0.91111 0.84668 0.78501 0.72733 0.80850 1.17639 1.18309 1.17626 1.20066 0.97243 0.89004 1.33000 0.86292 1.21950 0.96065 0.96604 0.94633 1.19651 0.98805 0.89855 1.32050 1.18801 0.92621 0.90626 0.91639 1.23928 0.96675 1.02952 1.19843 1.20479 0.98321 0.90438 0.90874 1.20564 0.94038 0.96622 1.16857 1.17963 0.94448 0.76161 0.96497 1.91449 1.95398 1.31947 1.93128 1.21417 0.95200 0.92176 1.23333 1.23679 0.91543 0.89954 0.69139 1.90479 1.88080 1.21561 1.40290 1.84645 1.04221 0.91498 1.79464 0.86396 0.86035 0.83616 0.83165 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -30.25 10.59 21.91 0.23 -30.02 15 2 C 0.02 0.63 5.50 85.41 0.47 1.10 15 3 Si 1.02 27.65 29.56 68.60 2.03 29.68 15 4 H -0.25 -6.77 7.11 99.48 0.71 -6.07 15 5 H -0.26 -6.62 7.11 99.48 0.71 -5.91 15 6 H -0.25 -6.77 7.11 99.48 0.71 -6.06 15 7 C -0.36 -15.18 9.27 23.16 0.21 -14.97 15 8 H 0.12 4.58 7.85 -2.91 -0.02 4.55 15 9 C 0.03 1.29 6.12 22.42 0.14 1.43 15 10 C -0.38 -17.46 9.77 22.23 0.22 -17.24 15 11 C 0.07 3.29 6.01 -20.05 -0.12 3.17 15 12 C -0.32 -14.11 6.48 23.12 0.15 -13.96 15 13 C 0.02 0.80 10.00 22.46 0.22 1.02 15 14 C -0.26 -9.81 9.94 22.22 0.22 -9.59 15 15 C 0.17 7.38 7.27 22.64 0.16 7.55 15 16 F -0.14 -6.20 15.51 44.97 0.70 -5.50 15 17 C -0.32 -14.21 6.08 -18.37 -0.11 -14.32 15 18 C 0.39 16.37 11.27 69.89 0.79 17.15 15 19 O -0.52 -24.39 16.14 -3.37 -0.05 -24.44 15 20 S 0.14 6.25 20.14 -56.49 -1.14 5.12 15 21 H 0.32 10.96 8.29 -92.71 -0.77 10.19 15 22 H 0.12 5.16 7.43 -2.91 -0.02 5.14 15 23 H 0.15 4.51 8.06 -2.91 -0.02 4.48 15 24 H 0.15 4.65 8.06 -2.91 -0.02 4.62 15 25 H 0.12 4.24 7.33 -2.91 -0.02 4.22 15 Total: -1.00 -54.03 247.98 5.36 -48.67 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 1.24 Total: 15.16 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 2.35 Total: -38.67 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 0.23 Total: -30.02 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.44 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.70 Total: -5.50 kcal Atomic # 14 Polarization: 27.65 SS G_CDS: 2.03 Total: 29.68 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.14 Total: 5.12 kcal Total: -54.03 5.36 -48.67 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291409.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.696 kcal (2) G-P(sol) polarization free energy of solvation -54.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds