Wall clock time and date at job start Mon Mar 30 2020 06:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30533 * 1 3 3 Si 1.86800 * 120.00317 * 2 1 4 4 H 1.48506 * 109.47194 * 269.99963 * 3 2 1 5 5 H 1.48498 * 109.47090 * 30.00174 * 3 2 1 6 6 H 1.48503 * 109.46953 * 149.99989 * 3 2 1 7 7 C 1.40499 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00079 * 157.43422 * 7 2 1 9 9 C 1.39726 * 120.00060 * 337.44053 * 7 2 1 10 10 C 1.47876 * 120.70058 * 321.29878 * 9 7 2 11 11 C 1.39902 * 128.90379 * 359.94239 * 10 9 7 12 12 C 1.32804 * 115.81478 * 180.02562 * 11 10 9 13 13 S 1.75480 * 110.70208 * 0.02562 * 12 11 10 14 14 C 1.40002 * 118.34894 * 179.97438 * 10 9 7 15 15 C 1.39783 * 120.73897 * 359.97251 * 14 10 9 16 16 C 1.37697 * 122.47178 * 0.06511 * 15 14 10 17 17 F 1.35092 * 119.59141 * 179.97438 * 16 15 14 18 18 C 1.40047 * 120.81131 * 359.93039 * 16 15 14 19 19 C 1.41811 * 120.47573 * 180.02562 * 18 16 15 20 20 O 1.21406 * 120.00333 * 5.05629 * 19 18 16 21 21 H 0.97003 * 119.99326 * 357.32260 * 1 2 3 22 22 H 1.08003 * 122.08901 * 0.05689 * 11 10 9 23 23 H 1.07994 * 124.65048 * 180.26130 * 12 11 10 24 24 H 1.07999 * 118.76701 * 179.97438 * 15 14 10 25 25 H 1.08006 * 119.99998 * 185.05957 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.4870 2.0464 -1.4001 5 1 1.4370 2.6526 0.7001 6 1 3.5370 1.4400 0.7001 7 6 2.0078 -1.2168 0.0005 8 1 3.0258 -1.2528 -0.3584 9 6 1.3894 -2.3803 0.4653 10 6 0.4929 -2.3410 1.6406 11 6 0.1296 -1.2462 2.4323 12 6 -0.7010 -1.5079 3.4350 13 16 -1.1115 -3.2136 3.4715 14 6 -0.1013 -3.5359 2.0638 15 6 0.1475 -4.7353 1.3903 16 6 0.9768 -4.8089 0.2935 17 9 1.1766 -5.9994 -0.3130 18 6 1.6148 -3.6647 -0.2015 19 6 2.4669 -3.7486 -1.3319 20 8 2.5762 -4.7976 -1.9333 21 1 -0.4849 0.8392 0.0392 22 1 0.5010 -0.2505 2.2397 23 1 -1.0757 -0.7712 4.1301 24 1 -0.3273 -5.6384 1.7444 25 1 3.0188 -2.8793 -1.6579 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396291823.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:26 Heat of formation + Delta-G solvation = -47.610241 kcal Electronic energy + Delta-G solvation = -15537.119359 eV Core-core repulsion = 12714.252529 eV Total energy + Delta-G solvation = -2822.866829 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.89877 -38.40385 -37.23571 -34.39784 -33.68722 -30.62865 -28.29581 -25.87363 -23.92631 -21.87665 -21.21910 -18.81397 -18.35536 -16.42398 -16.15398 -15.49748 -15.31362 -14.91213 -14.61905 -13.88057 -13.69313 -13.19945 -12.85593 -12.49355 -12.27058 -12.12164 -11.91711 -11.64926 -11.56347 -11.12451 -10.90365 -10.47917 -9.95498 -9.83608 -9.43770 -8.59768 -8.39501 -7.61769 -7.44790 -6.90549 -5.11478 1.47076 1.97032 2.35957 2.71440 2.74342 2.80617 2.82784 3.02550 3.44726 3.81801 4.01692 4.94514 5.37342 5.64368 5.65824 5.94734 6.15192 6.33426 6.42798 6.49486 6.66742 6.81755 6.82604 7.25147 7.32595 7.36103 7.56027 7.76146 7.98092 8.18202 8.78256 9.38221 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.016457 B = 0.012587 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.006930 B = 2224.016351 C = 3784.325685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.727 5.727 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.250 1.250 7 C -0.416 4.416 8 H 0.107 0.893 9 C 0.218 3.782 10 C -0.148 4.148 11 C -0.037 4.037 12 C -0.271 4.271 13 S 0.032 5.968 14 C -0.040 4.040 15 C -0.278 4.278 16 C 0.229 3.771 17 F -0.136 7.136 18 C -0.374 4.374 19 C 0.389 3.611 20 O -0.524 6.524 21 H 0.300 0.700 22 H 0.129 0.871 23 H 0.149 0.851 24 H 0.109 0.891 25 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 4.224 4.370 6.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.153 4.153 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.173 1.173 7 C -0.440 4.440 8 H 0.125 0.875 9 C 0.211 3.789 10 C -0.156 4.156 11 C -0.066 4.066 12 C -0.404 4.404 13 S 0.294 5.706 14 C -0.157 4.157 15 C -0.302 4.302 16 C 0.206 3.794 17 F -0.114 7.114 18 C -0.379 4.379 19 C 0.258 3.742 20 O -0.408 6.408 21 H 0.111 0.889 22 H 0.146 0.854 23 H 0.167 0.833 24 H 0.127 0.873 25 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.291 3.012 4.993 5.973 hybrid contribution 0.882 1.583 -0.781 1.973 sum -0.409 4.595 4.212 6.247 Atomic orbital electron populations 1.69717 1.08278 1.31936 1.24675 1.26239 0.94826 1.02270 0.91918 0.86218 0.81186 0.78955 0.80444 1.18352 1.19130 1.17309 1.19739 1.00600 0.91424 1.32282 0.87524 1.19246 0.83880 0.90363 0.85377 1.19139 1.06360 0.90982 0.99125 1.19736 0.95550 0.99049 0.92279 1.24716 1.10612 0.97652 1.07392 1.83554 1.51605 1.05202 1.30231 1.22195 0.99196 0.96786 0.97508 1.19166 1.11879 0.96475 1.02722 1.17351 0.92749 0.79690 0.89581 1.91452 1.93162 1.44535 1.82286 1.20228 1.17242 0.93635 1.06815 1.21895 0.79663 0.90509 0.82120 1.90466 1.61838 1.33488 1.54964 0.88859 0.85384 0.83312 0.87310 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -15.33 10.97 55.58 0.61 -14.72 15 2 C 0.08 1.51 3.75 -17.25 -0.06 1.45 15 3 Si 0.91 14.68 29.62 -169.99 -5.03 9.64 15 4 H -0.26 -4.18 7.11 56.52 0.40 -3.78 15 5 H -0.27 -4.20 7.11 56.52 0.40 -3.80 15 6 H -0.25 -4.02 7.11 56.52 0.40 -3.62 15 7 C -0.42 -8.96 8.05 -38.17 -0.31 -9.26 15 8 H 0.11 2.10 7.17 -52.49 -0.38 1.73 15 9 C 0.22 5.12 5.67 -102.09 -0.58 4.55 15 10 C -0.15 -3.41 5.54 -104.67 -0.58 -3.99 15 11 C -0.04 -0.77 8.29 -40.82 -0.34 -1.11 15 12 C -0.27 -5.04 11.11 28.87 0.32 -4.72 15 13 S 0.03 0.61 23.30 -107.50 -2.50 -1.89 15 14 C -0.04 -0.90 6.48 -38.34 -0.25 -1.15 15 15 C -0.28 -6.31 9.91 -39.20 -0.39 -6.70 15 16 C 0.23 5.54 7.23 -39.10 -0.28 5.25 15 17 F -0.14 -3.32 15.42 2.25 0.03 -3.28 15 18 C -0.37 -9.03 5.91 -104.54 -0.62 -9.65 15 19 C 0.39 8.98 10.84 32.10 0.35 9.33 15 20 O -0.52 -13.39 16.02 5.45 0.09 -13.31 15 21 H 0.30 5.60 8.29 -40.82 -0.34 5.26 15 22 H 0.13 2.56 6.04 -52.48 -0.32 2.25 15 23 H 0.15 2.31 8.06 -52.49 -0.42 1.89 15 24 H 0.11 2.26 8.06 -52.49 -0.42 1.83 15 25 H 0.08 1.57 6.81 -52.48 -0.36 1.21 15 LS Contribution 243.85 15.07 3.67 3.67 Total: -1.00 -26.02 243.85 -6.90 -32.92 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -1.03 Total: 2.97 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -2.74 Total: -16.01 kcal Atomic # 7 Polarization: -15.33 SS G_CDS: 0.61 Total: -14.72 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.03 Total: -3.28 kcal Atomic # 14 Polarization: 14.68 SS G_CDS: -5.03 Total: 9.64 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.50 Total: -1.89 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -26.02 -6.90 -32.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291823.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.690 kcal (2) G-P(sol) polarization free energy of solvation -26.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds