Wall clock time and date at job start Mon Mar 30 2020 06:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86794 * 120.00019 * 2 1 4 4 H 1.48500 * 109.47326 * 274.96102 * 3 2 1 5 5 H 1.48498 * 109.47251 * 34.96133 * 3 2 1 6 6 H 1.48506 * 109.46986 * 154.95858 * 3 2 1 7 7 C 1.39896 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00207 * 163.06268 * 7 2 1 9 9 C 1.41241 * 119.99767 * 343.07232 * 7 2 1 10 10 C 1.41073 * 120.14091 * 334.52408 * 9 7 2 11 11 C 1.35764 * 120.09275 * 179.97438 * 10 9 7 12 12 C 1.40461 * 120.85428 * 0.04572 * 11 10 9 13 13 S 1.75862 * 130.03526 * 180.26698 * 12 11 10 14 14 C 1.69947 * 93.25205 * 180.02562 * 13 12 11 15 15 F 1.35106 * 123.94070 * 179.97438 * 14 13 12 16 16 C 1.35939 * 112.11462 * 359.70026 * 14 13 12 17 17 C 1.41135 * 123.25554 * 180.20835 * 16 14 13 18 18 O 1.21473 * 120.00077 * 180.02562 * 17 16 14 19 19 C 1.39787 * 119.95734 * 359.97438 * 12 11 10 20 20 C 1.39909 * 119.41665 * 0.02562 * 19 12 11 21 21 H 0.96999 * 120.00229 * 0.02562 * 1 2 3 22 22 H 1.07997 * 119.95576 * 0.02562 * 10 9 7 23 23 H 1.07998 * 119.57570 * 180.02562 * 11 10 9 24 24 H 1.07999 * 119.99955 * 0.02562 * 17 16 14 25 25 H 1.07999 * 120.02451 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3854 2.1069 -1.3948 5 1 1.4966 2.6201 0.8023 6 1 3.5888 1.4121 0.5926 7 6 2.0082 -1.2115 0.0005 8 1 3.0530 -1.2320 -0.2719 9 6 1.3479 -2.4080 0.3572 10 6 0.2159 -2.3688 1.1982 11 6 -0.4184 -3.5195 1.5400 12 6 0.0375 -4.7611 1.0673 13 16 -0.5930 -6.3788 1.3472 14 6 0.6031 -7.1152 0.3905 15 9 0.6871 -8.4473 0.1807 16 6 1.4620 -6.2071 -0.1439 17 6 2.5420 -6.5621 -0.9802 18 8 3.2739 -5.7010 -1.4255 19 6 1.1576 -4.8220 0.2333 20 6 1.8149 -3.6391 -0.1220 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1472 -1.4220 1.5699 23 1 -1.2845 -3.4797 2.1840 24 1 2.7177 -7.5994 -1.2243 25 1 2.6810 -3.6747 -0.7662 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396291870.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:06 Heat of formation + Delta-G solvation = -58.322855 kcal Electronic energy + Delta-G solvation = -15065.062714 eV Core-core repulsion = 12241.731351 eV Total energy + Delta-G solvation = -2823.331363 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.33551 -40.69191 -39.20064 -36.56107 -34.72176 -31.87964 -30.12959 -27.73121 -26.38147 -23.54157 -22.83468 -21.06182 -19.62849 -18.85331 -18.16737 -17.33439 -17.18683 -16.98510 -16.19500 -15.75577 -15.25246 -15.21306 -14.75482 -14.55240 -13.99887 -13.92940 -13.48594 -13.07141 -12.85822 -12.48278 -12.18406 -11.94794 -11.67223 -11.38053 -11.03859 -10.63017 -10.31017 -9.27294 -8.87064 -8.61039 -6.45540 -0.75018 0.08451 0.59704 0.89043 0.93802 1.38047 1.43261 1.53403 2.00193 2.17871 2.57518 3.02824 3.47781 3.55236 3.99441 4.21841 4.48249 4.68749 4.81789 4.96216 5.06767 5.22502 5.50224 5.59919 5.72350 5.94552 6.16671 6.47635 6.55250 6.77019 6.83131 8.19918 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.034989 B = 0.006676 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.064596 B = 4193.411601 C = 4915.489281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.041 3.959 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.257 1.257 6 H -0.261 1.261 7 C -0.485 4.485 8 H 0.074 0.926 9 C 0.094 3.906 10 C -0.142 4.142 11 C -0.065 4.065 12 C -0.284 4.284 13 S 0.247 5.753 14 C 0.053 3.947 15 F -0.083 7.083 16 C -0.274 4.274 17 C 0.394 3.606 18 O -0.502 6.502 19 C -0.006 4.006 20 C -0.239 4.239 21 H 0.296 0.704 22 H 0.123 0.877 23 H 0.132 0.868 24 H 0.142 0.858 25 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 -8.279 3.295 9.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.176 4.176 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.181 1.181 6 H -0.185 1.185 7 C -0.514 4.514 8 H 0.092 0.908 9 C 0.090 3.910 10 C -0.163 4.163 11 C -0.087 4.087 12 C -0.399 4.399 13 S 0.512 5.488 14 C -0.086 4.086 15 F -0.062 7.062 16 C -0.293 4.293 17 C 0.256 3.744 18 O -0.381 6.381 19 C -0.011 4.011 20 C -0.261 4.261 21 H 0.107 0.893 22 H 0.141 0.859 23 H 0.150 0.850 24 H 0.158 0.842 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.937 -8.339 3.877 10.004 hybrid contribution 1.570 0.998 -1.096 2.159 sum -2.367 -7.341 2.782 8.200 Atomic orbital electron populations 1.69819 1.08847 1.31374 1.33629 1.26776 0.95602 1.04470 0.90777 0.85134 0.79193 0.75580 0.79533 1.18831 1.18107 1.18463 1.19868 0.98131 0.92278 1.41092 0.90800 1.17891 0.91630 0.92583 0.88859 1.21116 0.98200 0.97425 0.99586 1.20066 0.99441 0.89528 0.99656 1.22224 1.05398 0.97719 1.14575 1.82169 1.25459 0.94466 1.46663 1.22061 1.02269 0.80911 1.03341 1.91544 1.95258 1.26593 1.92809 1.20272 1.04988 0.92827 1.11249 1.22494 0.80283 0.95574 0.76097 1.90548 1.45249 1.55743 1.46551 1.18420 0.94907 0.91346 0.96396 1.20857 1.05311 0.91173 1.08782 0.89316 0.85927 0.85049 0.84187 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.05 10.96 21.82 0.24 -39.81 15 2 C 0.04 1.98 5.15 85.24 0.44 2.42 15 3 Si 0.99 36.89 29.59 68.60 2.03 38.92 15 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 15 5 H -0.26 -8.88 7.11 99.48 0.71 -8.17 15 6 H -0.26 -9.78 7.11 99.48 0.71 -9.08 15 7 C -0.49 -26.24 9.03 23.41 0.21 -26.03 15 8 H 0.07 3.98 7.90 -2.91 -0.02 3.95 15 9 C 0.09 5.10 5.55 -21.39 -0.12 4.99 15 10 C -0.14 -7.08 8.60 22.39 0.19 -6.89 15 11 C -0.07 -2.80 9.99 22.24 0.22 -2.58 15 12 C -0.28 -11.82 6.48 23.19 0.15 -11.67 15 13 S 0.25 7.37 22.96 -56.49 -1.30 6.07 15 14 C 0.05 1.64 7.93 67.29 0.53 2.17 15 15 F -0.08 -2.13 17.07 44.97 0.77 -1.36 15 16 C -0.27 -10.48 5.83 -20.88 -0.12 -10.60 15 17 C 0.39 14.04 11.15 68.53 0.76 14.81 15 18 O -0.50 -22.49 15.54 -3.63 -0.06 -22.55 15 19 C -0.01 -0.29 6.00 -20.28 -0.12 -0.41 15 20 C -0.24 -12.79 9.29 23.13 0.21 -12.57 15 21 H 0.30 12.94 8.30 -92.71 -0.77 12.17 15 22 H 0.12 6.15 6.18 -2.91 -0.02 6.13 15 23 H 0.13 4.66 8.06 -2.91 -0.02 4.64 15 24 H 0.14 3.45 7.97 -2.91 -0.02 3.42 15 25 H 0.09 5.35 6.38 -2.91 -0.02 5.33 15 Total: -1.00 -60.92 247.21 5.29 -55.62 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.25 Total: 9.48 kcal Atomic # 6 Polarization: -48.74 SS G_CDS: 2.37 Total: -46.37 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.24 Total: -39.81 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.06 Total: -22.55 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.77 Total: -1.36 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Atomic # 16 Polarization: 7.37 SS G_CDS: -1.30 Total: 6.07 kcal Total: -60.92 5.29 -55.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291870.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.698 kcal (2) G-P(sol) polarization free energy of solvation -60.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds