Wall clock time and date at job start Mon Mar 30 2020 06:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86798 * 120.00062 * 2 1 4 4 H 1.48499 * 109.47460 * 270.00158 * 3 2 1 5 5 H 1.48506 * 109.47273 * 30.00005 * 3 2 1 6 6 H 1.48504 * 109.47205 * 150.00204 * 3 2 1 7 7 C 1.39962 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00436 * 197.95157 * 7 2 1 9 9 C 1.40869 * 119.99752 * 17.94926 * 7 2 1 10 10 C 1.40318 * 120.09645 * 25.06153 * 9 7 2 11 11 C 1.38194 * 119.88515 * 179.72259 * 10 9 7 12 12 F 1.35105 * 119.57956 * 179.97438 * 11 10 9 13 13 C 1.37812 * 120.83900 * 0.02562 * 11 10 9 14 14 C 1.41813 * 120.91394 * 359.97255 * 13 11 10 15 15 C 1.40289 * 128.62174 * 179.97438 * 14 13 11 16 16 C 1.34234 * 115.50634 * 180.02562 * 15 14 13 17 17 C 1.41774 * 124.71781 * 179.97438 * 16 15 14 18 18 O 1.21388 * 119.99671 * 0.02562 * 17 16 15 19 19 S 1.75486 * 110.56610 * 359.97438 * 16 15 14 20 20 C 1.39853 * 118.75117 * 0.04796 * 14 13 11 21 21 H 0.96996 * 119.99407 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.05885 * 359.71119 * 10 9 7 23 23 H 1.07995 * 119.53779 * 179.97438 * 13 11 10 24 24 H 1.07998 * 122.24458 * 0.02562 * 15 14 13 25 25 H 1.07993 * 120.00286 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4400 2.6527 0.7001 6 1 3.5401 1.4401 0.7000 7 6 2.0084 -1.2121 -0.0005 8 1 3.0489 -1.2350 0.2877 9 6 1.3554 -2.4022 -0.3770 10 6 0.2373 -2.3538 -1.2235 11 6 -0.3964 -3.5245 -1.5947 12 9 -1.4727 -3.4707 -2.4095 13 6 0.0550 -4.7459 -1.1434 14 6 1.1817 -4.8351 -0.2869 15 6 1.7740 -5.9812 0.2643 16 6 2.8411 -5.7602 1.0482 17 6 3.5858 -6.7736 1.7027 18 8 3.2709 -7.9386 1.5719 19 16 3.1860 -4.0426 1.1502 20 6 1.8308 -3.6570 0.0958 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1275 -1.4035 -1.5841 23 1 -0.4565 -5.6475 -1.4464 24 1 1.3968 -6.9745 0.0709 25 1 4.4338 -6.5092 2.3170 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396291931.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:00 Heat of formation + Delta-G solvation = -52.443193 kcal Electronic energy + Delta-G solvation = -14983.439927 eV Core-core repulsion = 12160.363526 eV Total energy + Delta-G solvation = -2823.076402 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.86850 -39.13464 -37.99231 -35.07025 -33.10877 -30.09333 -28.93290 -25.87588 -24.86044 -21.98160 -21.14431 -19.30213 -18.00636 -16.82999 -15.98733 -15.77162 -15.56843 -14.87100 -14.55603 -14.22855 -14.11134 -13.83610 -13.18815 -12.69844 -12.45330 -12.19730 -11.82809 -11.43620 -11.23742 -10.90540 -10.66069 -10.28219 -10.01095 -9.83580 -9.69931 -9.44781 -8.60580 -7.58311 -7.21616 -6.98045 -4.77265 0.77448 2.23679 2.30107 2.52579 2.79564 2.87729 2.91714 2.92469 3.42409 3.65327 4.21226 4.62796 5.07079 5.35544 5.61573 5.75491 5.96588 6.22384 6.27501 6.52564 6.68928 6.77676 6.94863 7.11271 7.38049 7.46939 7.62199 7.75008 8.13675 8.35079 8.37085 9.75293 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.021902 B = 0.008362 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.103972 B = 3347.690018 C = 4542.931560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.075 3.925 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.441 4.441 8 H 0.089 0.911 9 C 0.155 3.845 10 C -0.206 4.206 11 C 0.131 3.869 12 F -0.161 7.161 13 C -0.249 4.249 14 C -0.048 4.048 15 C -0.020 4.020 16 C -0.312 4.312 17 C 0.413 3.587 18 O -0.476 6.476 19 S 0.108 5.892 20 C -0.186 4.186 21 H 0.290 0.710 22 H 0.138 0.862 23 H 0.109 0.891 24 H 0.137 0.863 25 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.087 -1.257 1.295 4.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.468 4.468 8 H 0.107 0.893 9 C 0.149 3.851 10 C -0.231 4.231 11 C 0.111 3.889 12 F -0.140 7.140 13 C -0.273 4.273 14 C -0.054 4.054 15 C -0.056 4.056 16 C -0.428 4.428 17 C 0.274 3.726 18 O -0.353 6.353 19 S 0.376 5.624 20 C -0.302 4.302 21 H 0.101 0.899 22 H 0.155 0.845 23 H 0.127 0.873 24 H 0.155 0.845 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.859 -0.869 2.046 5.343 hybrid contribution -1.095 0.119 -0.867 1.402 sum 3.764 -0.750 1.179 4.015 Atomic orbital electron populations 1.69803 1.07851 1.30477 1.30862 1.26032 0.94860 1.01962 0.91834 0.86143 0.80545 0.79480 0.79860 1.18729 1.19811 1.18079 1.19599 0.98429 0.90936 1.37864 0.89322 1.16701 0.90639 0.89243 0.88530 1.21088 1.01434 0.96383 1.04170 1.17331 0.84944 0.94740 0.91859 1.91368 1.53910 1.97517 1.71190 1.20041 1.02126 0.95656 1.09465 1.17636 0.97051 0.91062 0.99693 1.20456 0.92984 0.99098 0.93057 1.23544 1.06482 1.00612 1.12179 1.21797 0.85441 0.86671 0.78658 1.90529 1.67022 1.21781 1.56011 1.83470 1.31634 0.96097 1.51187 1.23115 1.02400 0.97590 1.07111 0.89855 0.84481 0.87283 0.84488 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.95 10.98 55.55 0.61 -17.34 15 2 C 0.08 1.69 5.12 -17.32 -0.09 1.60 15 3 Si 0.92 16.69 29.60 -169.99 -5.03 11.66 15 4 H -0.26 -4.75 7.11 56.52 0.40 -4.35 15 5 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 6 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 7 C -0.44 -10.43 8.82 -37.94 -0.33 -10.76 15 8 H 0.09 2.00 7.75 -52.49 -0.41 1.59 15 9 C 0.15 3.78 5.59 -106.57 -0.60 3.19 15 10 C -0.21 -5.05 8.65 -38.82 -0.34 -5.39 15 11 C 0.13 3.06 7.24 -39.75 -0.29 2.77 15 12 F -0.16 -3.59 17.25 2.25 0.04 -3.56 15 13 C -0.25 -5.47 10.05 -38.37 -0.39 -5.86 15 14 C -0.05 -1.04 5.86 -107.16 -0.63 -1.67 15 15 C -0.02 -0.39 9.75 -40.22 -0.39 -0.78 15 16 C -0.31 -5.54 6.14 -39.64 -0.24 -5.78 15 17 C 0.41 6.34 11.46 32.08 0.37 6.71 15 18 O -0.48 -8.60 17.42 5.46 0.10 -8.50 15 19 S 0.11 2.02 22.81 -107.50 -2.45 -0.43 15 20 C -0.19 -4.21 6.38 -37.43 -0.24 -4.45 15 21 H 0.29 6.10 8.30 -40.82 -0.34 5.76 15 22 H 0.14 3.44 6.16 -52.49 -0.32 3.12 15 23 H 0.11 2.15 8.06 -52.49 -0.42 1.73 15 24 H 0.14 2.43 7.90 -52.49 -0.41 2.01 15 25 H 0.10 1.08 8.06 -52.49 -0.42 0.66 15 LS Contribution 250.65 15.07 3.78 3.78 Total: -1.00 -25.73 250.65 -7.25 -32.98 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -1.12 Total: 1.82 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -3.16 Total: -20.41 kcal Atomic # 7 Polarization: -17.95 SS G_CDS: 0.61 Total: -17.34 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.10 Total: -8.50 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.04 Total: -3.56 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.45 Total: -0.43 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -25.73 -7.25 -32.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291931.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.462 kcal (2) G-P(sol) polarization free energy of solvation -25.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds