Wall clock time and date at job start Mon Mar 30 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30576 * 1 3 3 Si 1.86798 * 119.99812 * 2 1 4 4 H 1.48499 * 109.47311 * 275.21389 * 3 2 1 5 5 H 1.48503 * 109.47141 * 35.21231 * 3 2 1 6 6 H 1.48503 * 109.47068 * 155.21363 * 3 2 1 7 7 C 1.40405 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00788 * 340.87308 * 7 2 1 9 9 C 1.40394 * 119.99518 * 160.87615 * 7 2 1 10 10 C 1.42115 * 119.68098 * 135.90035 * 9 7 2 11 11 S 1.76025 * 130.68185 * 0.02562 * 10 9 7 12 12 C 1.75508 * 91.50543 * 180.02562 * 11 10 9 13 13 C 1.32254 * 110.68754 * 359.73614 * 12 11 10 14 14 C 1.39310 * 119.91798 * 180.02562 * 10 9 7 15 15 C 1.47454 * 118.31064 * 359.97438 * 14 10 9 16 16 C 1.46381 * 120.02678 * 179.97438 * 15 14 10 17 17 O 1.21384 * 120.00013 * 180.02562 * 16 15 14 18 18 C 1.39736 * 119.94451 * 359.97438 * 15 14 10 19 19 C 1.37389 * 120.57073 * 0.02562 * 18 15 14 20 20 F 1.35105 * 119.69048 * 179.97438 * 19 18 15 21 21 H 0.96997 * 120.00357 * 0.02562 * 1 2 3 22 22 H 1.08000 * 124.65632 * 179.97438 * 12 11 10 23 23 H 1.07993 * 122.09169 * 180.28970 * 13 12 11 24 24 H 1.08000 * 119.99635 * 359.97438 * 16 15 14 25 25 H 1.08004 * 119.71687 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2397 1.6177 0.0000 4 1 2.3770 2.1101 -1.3943 5 1 1.4965 2.6184 0.8073 6 1 3.5880 1.4109 0.5870 7 6 2.0077 -1.2160 0.0005 8 1 1.5126 -2.1253 0.3074 9 6 3.3536 -1.2497 -0.3978 10 6 4.2932 -1.9998 0.3599 11 16 4.0818 -2.9707 1.8129 12 6 5.7871 -3.3849 1.8400 13 6 6.4202 -2.8247 0.8229 14 6 5.6299 -2.0362 -0.0306 15 6 6.0274 -1.2839 -1.2348 16 6 7.4223 -1.2956 -1.6787 17 8 7.7490 -0.6758 -2.6698 18 6 5.0714 -0.5597 -1.9520 19 6 3.7593 -0.5405 -1.5451 20 9 2.8499 0.1660 -2.2516 21 1 -0.4850 0.8400 -0.0004 22 1 6.2545 -4.0142 2.5830 23 1 7.4788 -2.9626 0.6599 24 1 8.1607 -1.8552 -1.1238 25 1 5.3666 -0.0103 -2.8338 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396292147.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:53 Heat of formation + Delta-G solvation = -55.823098 kcal Electronic energy + Delta-G solvation = -15498.709454 eV Core-core repulsion = 12675.486488 eV Total energy + Delta-G solvation = -2823.222965 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.63193 -40.38285 -39.00034 -36.53898 -35.19778 -32.73448 -29.72888 -28.33516 -24.55428 -24.45376 -21.98835 -21.60286 -19.72995 -18.74739 -17.85307 -17.35455 -16.91012 -16.34506 -16.13014 -15.73316 -15.33369 -15.18413 -14.97090 -14.80629 -14.15903 -13.71055 -13.57071 -13.23700 -13.09790 -12.66265 -12.21909 -11.98959 -11.55769 -11.43589 -11.32736 -10.52942 -10.29298 -9.25057 -9.20765 -8.69543 -6.79268 -0.51335 0.19062 0.81361 1.12728 1.19580 1.27669 1.33009 1.51703 1.59739 1.97345 2.47960 3.00578 3.53607 3.84282 3.85868 4.24003 4.30588 4.56032 4.68682 4.81631 4.86886 5.12098 5.30091 5.32245 5.42072 5.55625 5.76598 5.96389 6.24845 6.39554 6.76481 7.82390 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.011830 C = 0.008149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.095576 B = 2366.390826 C = 3435.235268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.067 3.933 3 Si 0.947 3.053 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.259 1.259 7 C -0.454 4.454 8 H 0.085 0.915 9 C 0.110 3.890 10 C -0.224 4.224 11 S 0.088 5.912 12 C -0.171 4.171 13 C -0.142 4.142 14 C -0.004 4.004 15 C -0.279 4.279 16 C 0.401 3.599 17 O -0.535 6.535 18 C -0.034 4.034 19 C -0.086 4.086 20 F -0.156 7.156 21 H 0.305 0.695 22 H 0.209 0.791 23 H 0.181 0.819 24 H 0.144 0.856 25 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.561 -4.022 5.392 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.155 4.155 3 Si 0.769 3.231 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.182 1.182 7 C -0.480 4.480 8 H 0.103 0.897 9 C 0.104 3.896 10 C -0.340 4.340 11 S 0.353 5.647 12 C -0.306 4.306 13 C -0.173 4.173 14 C -0.015 4.015 15 C -0.284 4.284 16 C 0.268 3.732 17 O -0.416 6.416 18 C -0.054 4.054 19 C -0.109 4.109 20 F -0.136 7.136 21 H 0.116 0.884 22 H 0.226 0.774 23 H 0.199 0.801 24 H 0.160 0.840 25 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.148 -4.014 5.880 10.820 hybrid contribution 0.226 1.212 -1.236 1.746 sum 8.374 -2.802 4.644 9.977 Atomic orbital electron populations 1.69536 1.09036 1.32627 1.30918 1.26769 0.95328 1.03696 0.89743 0.85848 0.79998 0.77633 0.79576 1.18468 1.18677 1.18237 1.19477 0.93844 0.96571 1.38100 0.89697 1.17119 0.92835 0.90315 0.89331 1.22947 0.96520 1.11626 1.02881 1.84025 1.08865 1.47699 1.24152 1.25792 0.95811 1.05477 1.03508 1.20096 1.02525 0.99647 0.94985 1.19491 0.91523 0.95943 0.94499 1.20980 0.96748 1.10209 1.00431 1.23870 0.88982 0.77438 0.82911 1.90475 1.83231 1.40403 1.27448 1.20897 0.90666 0.95581 0.98256 1.17473 0.87439 1.09933 0.96067 1.91181 1.67361 1.77083 1.77936 0.88403 0.77427 0.80142 0.83980 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.16 13.92 21.90 0.30 -40.85 15 2 C 0.07 3.45 4.94 85.41 0.42 3.87 15 3 Si 0.95 43.07 24.73 68.60 1.70 44.76 15 4 H -0.26 -12.04 6.32 99.48 0.63 -11.41 15 5 H -0.26 -10.70 7.11 99.48 0.71 -10.00 15 6 H -0.26 -12.07 7.11 99.48 0.71 -11.36 15 7 C -0.45 -23.95 9.06 23.32 0.21 -23.74 15 8 H 0.09 4.70 8.06 -2.91 -0.02 4.67 15 9 C 0.11 5.47 4.69 -21.15 -0.10 5.37 15 10 C -0.22 -9.59 6.36 23.49 0.15 -9.44 15 11 S 0.09 3.00 23.00 -56.49 -1.30 1.70 15 12 C -0.17 -4.13 11.09 66.77 0.74 -3.39 15 13 C -0.14 -3.69 9.77 21.78 0.21 -3.48 15 14 C 0.00 -0.14 6.02 -20.03 -0.12 -0.26 15 15 C -0.28 -10.72 6.08 -18.37 -0.11 -10.83 15 16 C 0.40 12.72 11.27 69.94 0.79 13.51 15 17 O -0.53 -20.74 17.12 -3.35 -0.06 -20.80 15 18 C -0.03 -1.50 9.49 22.43 0.21 -1.29 15 19 C -0.09 -4.25 5.59 22.71 0.13 -4.12 15 20 F -0.16 -8.07 12.83 44.97 0.58 -7.49 15 21 H 0.30 14.03 8.29 -92.71 -0.77 13.26 15 22 H 0.21 3.02 8.06 -2.91 -0.02 2.99 15 23 H 0.18 3.00 7.42 -2.91 -0.02 2.98 15 24 H 0.14 2.90 7.32 -2.91 -0.02 2.88 15 25 H 0.13 5.38 7.60 -2.91 -0.02 5.36 15 Total: -1.00 -62.02 243.22 4.92 -57.11 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: 1.16 Total: -0.64 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 2.53 Total: -33.79 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.30 Total: -40.85 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.06 Total: -20.80 kcal Atomic # 9 Polarization: -8.07 SS G_CDS: 0.58 Total: -7.49 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.70 Total: 44.76 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.30 Total: 1.70 kcal Total: -62.02 4.92 -57.11 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396292147.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.284 kcal (2) G-P(sol) polarization free energy of solvation -62.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds