Wall clock time and date at job start Mon Mar 30 2020 06:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 120.00049 * 2 1 4 4 H 1.48502 * 109.47090 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47095 * 300.00138 * 3 2 1 6 6 H 1.48498 * 109.47259 * 60.00076 * 3 2 1 7 7 C 1.40240 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00031 * 163.62319 * 7 2 1 9 9 C 1.40366 * 119.99801 * 343.62869 * 7 2 1 10 10 C 1.40347 * 120.40236 * 333.50901 * 9 7 2 11 11 C 1.37682 * 120.14787 * 180.02562 * 10 9 7 12 12 C 1.38044 * 121.15244 * 0.02562 * 11 10 9 13 13 C 1.39866 * 121.51791 * 359.97438 * 12 11 10 14 14 S 1.76039 * 130.29224 * 180.02562 * 13 12 11 15 15 C 1.75482 * 91.69794 * 179.97438 * 14 13 12 16 16 C 1.41286 * 124.85042 * 180.02562 * 15 14 13 17 17 O 1.21458 * 119.99904 * 179.97438 * 16 15 14 18 18 C 1.36290 * 110.30021 * 359.76702 * 15 14 13 19 19 F 1.35099 * 122.40811 * 180.26489 * 18 15 14 20 20 C 1.39355 * 115.19030 * 0.41904 * 18 15 14 21 21 H 0.96997 * 119.99993 * 0.02562 * 1 2 3 22 22 H 1.08000 * 119.92786 * 0.05645 * 10 9 7 23 23 H 1.08004 * 119.42454 * 179.97438 * 11 10 9 24 24 H 1.07999 * 119.23959 * 180.02562 * 12 11 10 25 25 H 1.07995 * 120.00529 * 359.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3464 0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0080 -1.2145 0.0005 8 1 3.0551 -1.2336 -0.2632 9 6 1.3488 -2.4053 0.3437 10 6 0.2278 -2.3787 1.1878 11 6 -0.4144 -3.5500 1.5214 12 6 0.0239 -4.7671 1.0395 13 6 1.1344 -4.8619 0.1946 14 16 1.8843 -6.2719 -0.5460 15 6 3.0985 -5.2783 -1.3320 16 6 4.1271 -5.7696 -2.1667 17 8 4.9226 -5.0002 -2.6672 18 6 2.9040 -3.9643 -1.0269 19 9 3.6992 -2.9838 -1.5081 20 6 1.8281 -3.7049 -0.1801 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1321 -1.4374 1.5761 23 1 -1.2757 -3.5160 2.1722 24 1 -0.5034 -5.6667 1.3207 25 1 4.2062 -6.8292 -2.3597 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396292673.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:52 Heat of formation + Delta-G solvation = -64.742843 kcal Electronic energy + Delta-G solvation = -15356.198390 eV Core-core repulsion = 12532.588635 eV Total energy + Delta-G solvation = -2823.609755 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.93374 -40.07660 -39.49188 -36.37537 -35.10170 -31.94866 -30.71263 -27.81008 -25.79412 -23.85625 -22.46493 -20.92829 -19.88292 -18.50383 -17.62655 -17.27519 -16.94256 -16.82245 -16.66574 -15.67483 -15.26563 -15.04248 -14.84675 -14.37482 -14.02952 -13.81181 -13.44327 -13.24332 -12.95745 -12.45157 -12.18267 -11.79997 -11.64112 -11.45812 -11.28849 -10.83769 -10.15279 -9.39958 -9.08112 -8.57743 -6.59692 -0.73910 0.72682 0.74913 0.98441 1.05443 1.30429 1.41913 1.47249 1.96206 2.05376 2.39114 3.30675 3.37528 3.64868 4.21895 4.23270 4.36138 4.69286 4.80778 4.89851 4.97219 5.15655 5.19940 5.61607 5.67016 5.85086 5.92348 6.28978 6.40787 6.57980 6.59547 7.84435 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.009420 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.639373 B = 2971.842099 C = 4110.083703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.037 3.963 3 Si 0.989 3.011 4 H -0.264 1.264 5 H -0.257 1.257 6 H -0.245 1.245 7 C -0.424 4.424 8 H 0.084 0.916 9 C 0.126 3.874 10 C -0.205 4.205 11 C -0.041 4.041 12 C -0.228 4.228 13 C -0.063 4.063 14 S 0.153 5.847 15 C -0.443 4.443 16 C 0.412 3.588 17 O -0.530 6.530 18 C 0.217 3.783 19 F -0.128 7.128 20 C -0.278 4.278 21 H 0.309 0.691 22 H 0.122 0.878 23 H 0.140 0.860 24 H 0.134 0.866 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.682 -3.905 2.367 4.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.186 4.186 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.181 1.181 6 H -0.168 1.168 7 C -0.449 4.449 8 H 0.102 0.898 9 C 0.120 3.880 10 C -0.227 4.227 11 C -0.063 4.063 12 C -0.255 4.255 13 C -0.179 4.179 14 S 0.415 5.585 15 C -0.559 4.559 16 C 0.279 3.721 17 O -0.413 6.413 18 C 0.185 3.815 19 F -0.106 7.106 20 C -0.283 4.283 21 H 0.121 0.879 22 H 0.139 0.861 23 H 0.157 0.843 24 H 0.152 0.848 25 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.648 -4.922 1.995 5.561 hybrid contribution 0.639 2.438 -0.223 2.530 sum -1.009 -2.484 1.772 3.214 Atomic orbital electron populations 1.69710 1.09071 1.32890 1.26709 1.27031 0.95767 1.04915 0.90932 0.85035 0.79144 0.74874 0.80265 1.18724 1.18088 1.16833 1.20342 0.98413 0.92301 1.33853 0.89768 1.18851 0.91499 0.89462 0.88156 1.21165 0.99963 0.98375 1.03199 1.20990 0.97494 0.91527 0.96238 1.20052 0.99801 0.98559 1.07108 1.22604 0.99254 0.95420 1.00602 1.82718 1.23217 1.04841 1.47675 1.23579 1.13945 0.95862 1.22487 1.21972 0.79007 0.95883 0.75207 1.90554 1.41021 1.63268 1.46418 1.17533 0.87556 0.84715 0.91710 1.91415 1.71947 1.61680 1.85579 1.19122 1.02654 0.96471 1.10064 0.87885 0.86067 0.84266 0.84798 0.83899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -34.09 10.99 21.88 0.24 -33.85 15 2 C 0.04 1.66 5.15 85.35 0.44 2.10 15 3 Si 0.99 34.02 29.59 68.60 2.03 36.05 15 4 H -0.26 -9.50 7.11 99.48 0.71 -8.79 15 5 H -0.26 -8.43 7.11 99.48 0.71 -7.73 15 6 H -0.24 -7.65 7.11 99.48 0.71 -6.94 15 7 C -0.42 -21.49 8.56 23.27 0.20 -21.29 15 8 H 0.08 4.40 6.45 -2.91 -0.02 4.38 15 9 C 0.13 6.45 5.74 -19.63 -0.11 6.34 15 10 C -0.20 -9.49 8.65 22.65 0.20 -9.29 15 11 C -0.04 -1.63 9.95 22.09 0.22 -1.41 15 12 C -0.23 -8.83 10.02 22.62 0.23 -8.61 15 13 C -0.06 -2.70 6.48 23.09 0.15 -2.55 15 14 S 0.15 5.37 23.22 -56.49 -1.31 4.06 15 15 C -0.44 -18.45 6.19 22.57 0.14 -18.31 15 16 C 0.41 15.36 11.44 68.57 0.78 16.14 15 17 O -0.53 -24.15 16.65 -3.58 -0.06 -24.21 15 18 C 0.22 10.70 7.32 22.08 0.16 10.86 15 19 F -0.13 -6.74 14.18 44.97 0.64 -6.10 15 20 C -0.28 -13.82 6.01 -19.96 -0.12 -13.94 15 21 H 0.31 11.91 8.29 -92.71 -0.77 11.14 15 22 H 0.12 5.61 6.23 -2.91 -0.02 5.59 15 23 H 0.14 4.39 8.06 -2.91 -0.02 4.36 15 24 H 0.13 4.25 8.06 -2.91 -0.02 4.23 15 25 H 0.15 3.68 8.06 -2.91 -0.02 3.66 15 Total: -1.00 -59.19 246.61 5.07 -54.12 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.24 Total: 9.89 kcal Atomic # 6 Polarization: -42.26 SS G_CDS: 2.28 Total: -39.97 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.24 Total: -33.85 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.06 Total: -24.21 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.64 Total: -6.10 kcal Atomic # 14 Polarization: 34.02 SS G_CDS: 2.03 Total: 36.05 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -1.31 Total: 4.06 kcal Total: -59.19 5.07 -54.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396292673.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.618 kcal (2) G-P(sol) polarization free energy of solvation -59.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds