Wall clock time and date at job start Mon Mar 30 2020 06:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30569 * 1 3 3 Si 1.86797 * 119.99797 * 2 1 4 4 H 1.48510 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47234 * 299.99038 * 3 2 1 6 6 H 1.48498 * 109.47689 * 59.99400 * 3 2 1 7 7 C 1.40399 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99646 * 195.14779 * 7 2 1 9 9 C 1.40256 * 119.99689 * 15.14212 * 7 2 1 10 10 C 1.41082 * 120.61165 * 25.45632 * 9 7 2 11 11 C 1.35438 * 120.59698 * 179.97438 * 10 9 7 12 12 F 1.35103 * 119.01211 * 180.02562 * 11 10 9 13 13 C 1.42159 * 121.97241 * 0.04283 * 11 10 9 14 14 C 1.40593 * 128.24882 * 179.67522 * 13 11 10 15 15 C 1.32458 * 115.93552 * 179.83234 * 14 13 11 16 16 S 1.75475 * 110.79875 * 0.43897 * 15 14 13 17 17 C 1.40110 * 119.49491 * 359.97438 * 13 11 10 18 18 C 1.41003 * 120.10846 * 359.97356 * 17 13 11 19 19 C 1.41762 * 120.48003 * 179.97438 * 18 17 13 20 20 O 1.21421 * 120.00105 * 0.05584 * 19 18 17 21 21 H 0.96998 * 120.00309 * 0.02562 * 1 2 3 22 22 H 1.07999 * 119.70092 * 0.02562 * 10 9 7 23 23 H 1.08007 * 122.02753 * 0.02562 * 14 13 11 24 24 H 1.08004 * 124.59818 * 180.19703 * 15 14 13 25 25 H 1.07997 * 120.00319 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2396 1.6177 0.0000 4 1 3.6997 1.3465 0.0006 5 1 1.8810 2.3964 -1.2126 6 1 1.8808 2.3966 1.2124 7 6 2.0077 -1.2159 0.0005 8 1 3.0596 -1.2319 0.2450 9 6 1.3429 -2.4096 -0.3162 10 6 0.1875 -2.3954 -1.1257 11 6 -0.4539 -3.5483 -1.4318 12 9 -1.5572 -3.4976 -2.2100 13 6 -0.0013 -4.8101 -0.9585 14 6 -0.5635 -6.0782 -1.1873 15 6 0.0652 -7.1004 -0.6267 16 16 1.4621 -6.5503 0.2818 17 6 1.1419 -4.8743 -0.1510 18 6 1.8361 -3.6946 0.1874 19 6 2.9932 -3.7503 1.0044 20 8 3.3939 -4.8196 1.4173 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1884 -1.4568 -1.5054 23 1 -1.4523 -6.2111 -1.7864 24 1 -0.2426 -8.1320 -0.7135 25 1 3.5188 -2.8419 1.2591 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396292727.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:01 Heat of formation + Delta-G solvation = -53.808712 kcal Electronic energy + Delta-G solvation = -15351.970354 eV Core-core repulsion = 12528.834738 eV Total energy + Delta-G solvation = -2823.135615 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.03335 -38.55951 -37.03049 -35.46848 -33.11059 -29.89006 -29.14081 -25.91182 -23.89094 -22.32891 -20.11382 -19.76076 -18.24587 -16.64889 -16.13173 -15.47107 -15.25721 -14.73198 -14.47596 -13.93251 -13.67374 -13.39548 -13.15996 -12.75962 -12.20593 -12.00123 -11.90473 -11.52996 -11.29419 -11.02764 -10.76059 -10.49689 -10.18126 -9.80572 -9.54103 -8.45631 -8.44497 -7.72284 -7.56736 -6.86143 -5.11174 1.56520 1.94910 2.53792 2.60622 2.71830 2.79429 3.01944 3.11912 3.41258 3.76502 4.04839 5.04614 5.32276 5.61240 5.67755 6.08411 6.15172 6.24278 6.35364 6.47325 6.77144 6.80692 6.98173 7.18213 7.31603 7.41348 7.48489 7.82994 7.97539 8.18312 8.80480 9.32696 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026184 B = 0.008748 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.085191 B = 3200.047326 C = 4194.709053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.066 3.934 3 Si 0.928 3.072 4 H -0.250 1.250 5 H -0.263 1.263 6 H -0.265 1.265 7 C -0.389 4.389 8 H 0.105 0.895 9 C 0.175 3.825 10 C -0.189 4.189 11 C 0.167 3.833 12 F -0.156 7.156 13 C -0.245 4.245 14 C -0.074 4.074 15 C -0.292 4.292 16 S 0.105 5.895 17 C 0.007 3.993 18 C -0.327 4.327 19 C 0.378 3.622 20 O -0.528 6.528 21 H 0.299 0.701 22 H 0.141 0.859 23 H 0.121 0.879 24 H 0.148 0.852 25 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 1.079 -1.525 1.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.161 4.161 3 Si 0.749 3.251 4 H -0.173 1.173 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.414 4.414 8 H 0.123 0.877 9 C 0.168 3.832 10 C -0.210 4.210 11 C 0.145 3.855 12 F -0.135 7.135 13 C -0.252 4.252 14 C -0.104 4.104 15 C -0.425 4.425 16 S 0.367 5.633 17 C -0.110 4.110 18 C -0.337 4.337 19 C 0.249 3.751 20 O -0.414 6.414 21 H 0.111 0.889 22 H 0.159 0.841 23 H 0.139 0.861 24 H 0.166 0.834 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.058 -0.135 -0.515 1.184 hybrid contribution -1.364 1.562 -1.111 2.353 sum -0.306 1.427 -1.626 2.185 Atomic orbital electron populations 1.69668 1.08382 1.31713 1.26100 1.26446 0.95087 1.03017 0.91551 0.85892 0.81145 0.78517 0.79520 1.17262 1.18772 1.18935 1.20076 0.98316 0.90178 1.32806 0.87710 1.18334 0.88659 0.90760 0.85407 1.20933 0.99801 0.96305 1.03933 1.17381 0.83541 0.93129 0.91400 1.91371 1.51762 1.97408 1.72978 1.17662 1.02067 0.92558 1.12895 1.19609 0.99731 0.91002 1.00027 1.24945 1.04683 1.01890 1.11015 1.84311 1.27542 0.97866 1.53555 1.22461 0.95672 0.96417 0.96496 1.19654 1.06584 0.91081 1.16336 1.21920 0.83821 0.91813 0.77553 1.90395 1.66603 1.34015 1.50390 0.88880 0.84129 0.86130 0.83432 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -15.44 10.86 55.57 0.60 -14.84 15 2 C 0.07 1.31 5.20 -17.28 -0.09 1.22 15 3 Si 0.93 14.62 29.59 -169.99 -5.03 9.59 15 4 H -0.25 -3.89 7.11 56.52 0.40 -3.48 15 5 H -0.26 -4.12 7.11 56.52 0.40 -3.72 15 6 H -0.26 -4.15 7.11 56.52 0.40 -3.75 15 7 C -0.39 -8.31 8.47 -38.01 -0.32 -8.63 15 8 H 0.11 2.05 6.63 -52.48 -0.35 1.70 15 9 C 0.18 4.11 5.73 -104.71 -0.60 3.51 15 10 C -0.19 -4.44 8.52 -39.50 -0.34 -4.78 15 11 C 0.17 3.89 7.27 -39.08 -0.28 3.61 15 12 F -0.16 -3.44 17.11 2.25 0.04 -3.40 15 13 C -0.24 -5.72 5.88 -106.80 -0.63 -6.35 15 14 C -0.07 -1.53 10.00 -40.61 -0.41 -1.94 15 15 C -0.29 -5.65 11.09 28.81 0.32 -5.33 15 16 S 0.10 2.24 21.36 -107.50 -2.30 -0.05 15 17 C 0.01 0.16 6.32 -37.83 -0.24 -0.08 15 18 C -0.33 -7.82 5.95 -104.15 -0.62 -8.44 15 19 C 0.38 8.54 10.83 32.08 0.35 8.89 15 20 O -0.53 -12.87 15.68 5.43 0.09 -12.78 15 21 H 0.30 5.49 8.29 -40.82 -0.34 5.15 15 22 H 0.14 3.25 6.13 -52.49 -0.32 2.93 15 23 H 0.12 2.22 8.06 -52.48 -0.42 1.80 15 24 H 0.15 2.36 8.06 -52.48 -0.42 1.94 15 25 H 0.08 1.50 6.56 -52.49 -0.34 1.16 15 LS Contribution 244.89 15.07 3.69 3.69 Total: -1.00 -25.63 244.89 -6.76 -32.39 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -0.99 Total: 3.73 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -2.86 Total: -18.31 kcal Atomic # 7 Polarization: -15.44 SS G_CDS: 0.60 Total: -14.84 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.04 Total: -3.40 kcal Atomic # 14 Polarization: 14.62 SS G_CDS: -5.03 Total: 9.59 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.30 Total: -0.05 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -25.63 -6.76 -32.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396292727.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.421 kcal (2) G-P(sol) polarization free energy of solvation -25.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds