Wall clock time and date at job start Mon Mar 30 2020 06:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30842 * 1 3 3 Si 1.86799 * 120.00297 * 2 1 4 4 H 1.48499 * 109.47449 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47380 * 300.00433 * 3 2 1 6 6 H 1.48507 * 109.46871 * 60.00361 * 3 2 1 7 7 C 1.39959 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99711 * 162.59848 * 7 2 1 9 9 C 1.40972 * 120.00299 * 342.58987 * 7 2 1 10 10 C 1.40433 * 120.10010 * 334.48062 * 9 7 2 11 11 C 1.37740 * 119.88471 * 179.97438 * 10 9 7 12 12 C 1.38036 * 120.60217 * 359.97438 * 11 10 9 13 13 C 1.40779 * 120.86894 * 359.97438 * 12 11 10 14 14 C 1.46680 * 129.44734 * 180.02562 * 13 12 11 15 15 C 1.41229 * 123.25284 * 359.97438 * 14 13 12 16 16 O 1.21466 * 119.99594 * 180.02562 * 15 14 13 17 17 C 1.35985 * 113.48977 * 179.97438 * 14 13 12 18 18 F 1.35105 * 124.03015 * 180.26423 * 17 14 13 19 19 S 1.69994 * 111.94161 * 0.02562 * 17 14 13 20 20 C 1.38993 * 119.36021 * 0.02562 * 13 12 11 21 21 H 0.97004 * 119.99682 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.05324 * 359.97438 * 10 9 7 23 23 H 1.08000 * 119.70174 * 179.97438 * 11 10 9 24 24 H 1.07993 * 119.56997 * 180.02562 * 12 11 10 25 25 H 1.07991 * 120.00296 * 0.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3463 -0.0006 5 1 1.8838 2.3965 -1.2124 6 1 1.8838 2.3963 1.2126 7 6 2.0082 -1.2121 -0.0005 8 1 3.0511 -1.2334 -0.2803 9 6 1.3517 -2.4052 0.3642 10 6 0.2316 -2.3624 1.2102 11 6 -0.4067 -3.5308 1.5633 12 6 0.0439 -4.7477 1.0926 13 6 1.1633 -4.8236 0.2422 14 6 1.7964 -6.0006 -0.3622 15 6 1.3344 -7.3194 -0.1574 16 8 1.9046 -8.2518 -0.6873 17 6 2.8712 -5.6991 -1.1388 18 9 3.6081 -6.6186 -1.7998 19 16 3.1733 -4.0268 -1.1838 20 6 1.8205 -3.6552 -0.1252 21 1 -0.4850 0.8401 0.0004 22 1 -0.1286 -1.4151 1.5832 23 1 -1.2676 -3.4946 2.2145 24 1 -0.4694 -5.6534 1.3797 25 1 0.4741 -7.4988 0.4703 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396292888.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:47 Heat of formation + Delta-G solvation = -59.696346 kcal Electronic energy + Delta-G solvation = -15128.167303 eV Core-core repulsion = 12304.776381 eV Total energy + Delta-G solvation = -2823.390922 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.28151 -40.60247 -39.34691 -36.43792 -34.75221 -31.93253 -29.65061 -27.94613 -26.47873 -23.26275 -22.75457 -21.27512 -19.97634 -18.55364 -17.42992 -17.23708 -17.18792 -17.12024 -16.78025 -15.71472 -15.17768 -15.17528 -14.82328 -14.31253 -14.14862 -14.01078 -13.26856 -12.98659 -12.76713 -12.49574 -12.08363 -11.91301 -11.65515 -11.28969 -11.12715 -10.80590 -10.21749 -9.22856 -8.83755 -8.69341 -6.43678 -0.71109 0.08722 0.66868 0.87725 1.07149 1.40561 1.47441 1.54389 1.98015 2.17330 2.67733 3.10804 3.52753 3.60183 3.94053 4.34371 4.55558 4.65827 4.82660 4.94978 5.16288 5.20009 5.39905 5.65511 5.85621 6.06055 6.13429 6.44283 6.53570 6.73336 6.81230 8.19576 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.033113 B = 0.007465 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.377668 B = 3749.793694 C = 4514.734004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.044 3.956 3 Si 0.978 3.022 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.483 4.483 8 H 0.080 0.920 9 C 0.130 3.870 10 C -0.194 4.194 11 C -0.072 4.072 12 C -0.216 4.216 13 C -0.008 4.008 14 C -0.259 4.259 15 C 0.405 3.595 16 O -0.512 6.512 17 C 0.029 3.971 18 F -0.095 7.095 19 S 0.211 5.789 20 C -0.273 4.273 21 H 0.295 0.705 22 H 0.115 0.885 23 H 0.131 0.869 24 H 0.137 0.863 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.728 -1.460 1.418 2.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.174 4.174 3 Si 0.798 3.202 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.511 4.511 8 H 0.098 0.902 9 C 0.124 3.876 10 C -0.217 4.217 11 C -0.091 4.091 12 C -0.238 4.238 13 C -0.013 4.013 14 C -0.278 4.278 15 C 0.268 3.732 16 O -0.392 6.392 17 C -0.109 4.109 18 F -0.074 7.074 19 S 0.478 5.522 20 C -0.388 4.388 21 H 0.106 0.894 22 H 0.132 0.868 23 H 0.149 0.851 24 H 0.155 0.845 25 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.968 -0.960 0.340 2.216 hybrid contribution -0.626 -0.157 0.411 0.765 sum 1.342 -1.116 0.751 1.900 Atomic orbital electron populations 1.69838 1.08879 1.31277 1.32683 1.26675 0.95465 1.04286 0.90989 0.85203 0.79554 0.76218 0.79210 1.18168 1.19049 1.18499 1.19806 0.98264 0.92196 1.40855 0.90184 1.17269 0.91908 0.89459 0.88954 1.21189 1.00056 0.98007 1.02417 1.20922 0.98341 0.92020 0.97841 1.20417 0.99262 0.98298 1.05809 1.18424 0.96557 0.88452 0.97896 1.20389 1.00853 0.98977 1.07627 1.22426 0.86962 0.84603 0.79186 1.90551 1.57424 1.46486 1.44715 1.22628 0.95467 0.94538 0.98248 1.91514 1.74291 1.64103 1.77454 1.82665 1.30239 0.91002 1.48339 1.22718 1.05413 0.98584 1.12072 0.89387 0.86758 0.85140 0.84516 0.83931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.27 10.98 21.83 0.24 -37.03 15 2 C 0.04 1.99 5.13 85.26 0.44 2.43 15 3 Si 0.98 34.21 29.59 68.60 2.03 36.24 15 4 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 5 H -0.27 -9.01 7.11 99.48 0.71 -8.30 15 6 H -0.26 -8.73 7.11 99.48 0.71 -8.03 15 7 C -0.48 -23.27 8.81 23.36 0.21 -23.07 15 8 H 0.08 3.75 7.74 -2.91 -0.02 3.72 15 9 C 0.13 6.29 5.59 -21.09 -0.12 6.17 15 10 C -0.19 -8.96 8.66 22.69 0.20 -8.76 15 11 C -0.07 -2.85 9.98 22.10 0.22 -2.63 15 12 C -0.22 -8.07 9.85 22.84 0.23 -7.84 15 13 C -0.01 -0.34 6.02 -20.27 -0.12 -0.47 15 14 C -0.26 -9.94 5.83 -20.86 -0.12 -10.06 15 15 C 0.41 13.64 11.18 68.56 0.77 14.41 15 16 O -0.51 -20.20 16.55 -3.61 -0.06 -20.26 15 17 C 0.03 1.15 7.91 67.30 0.53 1.68 15 18 F -0.09 -3.70 16.10 44.97 0.72 -2.97 15 19 S 0.21 8.23 22.54 -56.49 -1.27 6.96 15 20 C -0.27 -12.28 6.34 23.43 0.15 -12.13 15 21 H 0.30 12.23 8.30 -92.71 -0.77 11.46 15 22 H 0.11 5.47 6.19 -2.91 -0.02 5.45 15 23 H 0.13 4.24 8.06 -2.91 -0.02 4.22 15 24 H 0.14 4.00 7.57 -2.91 -0.02 3.97 15 25 H 0.14 3.50 7.53 -2.92 -0.02 3.48 15 Total: -1.00 -54.88 247.79 5.28 -49.61 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.24 Total: 7.71 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 2.37 Total: -40.26 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.24 Total: -37.03 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.06 Total: -20.26 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.72 Total: -2.97 kcal Atomic # 14 Polarization: 34.21 SS G_CDS: 2.03 Total: 36.24 kcal Atomic # 16 Polarization: 8.23 SS G_CDS: -1.27 Total: 6.96 kcal Total: -54.88 5.28 -49.61 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396292888.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.089 kcal (2) G-P(sol) polarization free energy of solvation -54.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds