Wall clock time and date at job start Mon Mar 30 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30711 * 1 3 3 Si 1.86802 * 119.99797 * 2 1 4 4 H 1.48499 * 109.47272 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46719 * 120.00552 * 3 2 1 6 6 H 1.48500 * 109.47302 * 240.00045 * 3 2 1 7 7 C 1.40166 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00338 * 141.15043 * 7 2 1 9 9 C 1.40776 * 119.99717 * 321.14996 * 7 2 1 10 10 C 1.40338 * 120.19380 * 143.85233 * 9 7 2 11 11 C 1.38989 * 120.06369 * 179.97438 * 10 9 7 12 12 S 1.76037 * 130.15806 * 180.02562 * 11 10 9 13 13 C 1.75452 * 91.68115 * 179.97438 * 12 11 10 14 14 C 1.41808 * 124.75471 * 180.02562 * 13 12 11 15 15 O 1.21393 * 120.00020 * 179.97438 * 14 13 12 16 16 C 1.35639 * 110.50067 * 0.02562 * 13 12 11 17 17 C 1.39677 * 115.39262 * 359.97438 * 16 13 12 18 18 C 1.42276 * 128.31077 * 180.02562 * 17 16 13 19 19 C 1.35260 * 120.86523 * 179.64222 * 18 17 16 20 20 F 1.35104 * 119.82699 * 180.34346 * 19 18 17 21 21 H 0.97003 * 120.00145 * 174.22929 * 1 2 3 22 22 H 1.08010 * 119.96901 * 0.02562 * 10 9 7 23 23 H 1.07998 * 119.99669 * 359.97438 * 14 13 12 24 24 H 1.08004 * 122.30852 * 179.97438 * 16 13 12 25 25 H 1.08001 * 119.56327 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 1.2761 2.7465 0.0006 5 1 3.0949 1.6963 1.2125 6 1 3.0948 1.6965 -1.2125 7 6 2.0079 -1.2139 -0.0005 8 1 2.9087 -1.3171 -0.5872 9 6 1.5376 -2.2985 0.7638 10 6 1.6675 -3.6102 0.2822 11 6 1.2026 -4.6791 1.0393 12 16 1.2278 -6.4064 0.7003 13 6 0.4406 -6.7697 2.2256 14 6 0.1104 -8.0737 2.6745 15 8 -0.4348 -8.2260 3.7483 16 6 0.1920 -5.6286 2.9155 17 6 0.6007 -4.4489 2.2892 18 6 0.4777 -3.1120 2.7601 19 6 0.9365 -2.0727 2.0259 20 9 0.8150 -0.8121 2.4965 21 1 -0.4850 -0.8358 -0.0845 22 1 2.1299 -3.7894 -0.6773 23 1 0.3439 -8.9312 2.0609 24 1 -0.2889 -5.6319 3.8826 25 1 0.0168 -2.9250 3.7187 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396293426.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:51 Heat of formation + Delta-G solvation = -58.480397 kcal Electronic energy + Delta-G solvation = -15057.717104 eV Core-core repulsion = 12234.378910 eV Total energy + Delta-G solvation = -2823.338195 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.76950 -38.91029 -38.00237 -35.25036 -33.19270 -30.11259 -29.25404 -26.46479 -23.73975 -22.38878 -21.17288 -19.41778 -18.60051 -17.18679 -15.97857 -15.83414 -15.34468 -14.64065 -14.41387 -14.25771 -13.88469 -13.86512 -13.13519 -12.98761 -12.55407 -12.33788 -11.98458 -11.61641 -11.47743 -10.83182 -10.64963 -10.29835 -9.98971 -9.92650 -9.45962 -9.23820 -8.92746 -8.01264 -7.69714 -7.07812 -4.95577 0.84288 2.20037 2.27955 2.43770 2.68603 2.88445 2.96700 3.13674 3.47565 3.64002 4.00841 4.68492 4.83049 5.34086 5.47685 5.79831 5.87556 6.10851 6.27185 6.48323 6.53425 6.68953 6.97429 7.06586 7.12438 7.21730 7.37951 7.54694 7.90789 7.98621 8.10777 9.34086 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.049760 B = 0.006041 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.561837 B = 4633.517219 C = 5018.070826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.043 3.957 3 Si 1.063 2.937 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.464 4.464 8 H 0.102 0.898 9 C 0.083 3.917 10 C -0.212 4.212 11 C -0.038 4.038 12 S 0.043 5.957 13 C -0.374 4.374 14 C 0.412 3.588 15 O -0.498 6.498 16 C 0.035 3.965 17 C -0.221 4.221 18 C -0.074 4.074 19 C 0.025 3.975 20 F -0.144 7.144 21 H 0.302 0.698 22 H 0.113 0.887 23 H 0.084 0.916 24 H 0.132 0.868 25 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 -2.148 -0.956 3.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.342 5.342 2 C -0.188 4.188 3 Si 0.884 3.116 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.120 0.880 9 C 0.076 3.924 10 C -0.240 4.240 11 C -0.154 4.154 12 S 0.305 5.695 13 C -0.489 4.489 14 C 0.277 3.723 15 O -0.379 6.379 16 C 0.004 3.996 17 C -0.225 4.225 18 C -0.096 4.096 19 C 0.006 3.994 20 F -0.123 7.123 21 H 0.115 0.885 22 H 0.131 0.869 23 H 0.101 0.899 24 H 0.150 0.850 25 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.340 -1.581 -1.447 3.173 hybrid contribution -0.342 -0.654 1.050 1.284 sum 1.998 -2.235 -0.396 3.024 Atomic orbital electron populations 1.70449 1.08586 1.34797 1.20338 1.27435 0.95204 1.05204 0.90915 0.83645 0.76120 0.73077 0.78747 1.19140 1.19079 1.19418 1.20883 1.09700 0.95756 1.22573 0.88015 1.17544 0.91027 0.93276 0.90568 1.20069 1.13898 0.89675 1.00358 1.22526 1.00334 0.95624 0.96940 1.83419 1.65840 0.99915 1.20294 1.23049 1.23199 0.99393 1.03261 1.21473 0.74480 0.90055 0.86309 1.90502 1.35078 1.88962 1.23326 1.20480 0.91221 0.90209 0.97672 1.17345 1.14859 0.92698 0.97586 1.20284 0.99462 0.90706 0.99156 1.17391 1.08480 0.78737 0.94824 1.91402 1.94524 1.38171 1.88223 0.88500 0.86928 0.89943 0.85036 0.86686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -16.86 12.68 55.56 0.70 -16.16 15 2 C 0.04 0.94 3.79 -17.30 -0.07 0.88 15 3 Si 1.06 18.79 30.06 -169.99 -5.11 13.68 15 4 H -0.27 -4.72 7.11 56.52 0.40 -4.32 15 5 H -0.27 -4.66 7.11 56.52 0.40 -4.26 15 6 H -0.27 -4.38 7.11 56.52 0.40 -3.97 15 7 C -0.46 -10.50 8.71 -37.90 -0.33 -10.83 15 8 H 0.10 2.17 8.06 -52.49 -0.42 1.75 15 9 C 0.08 1.93 5.02 -106.86 -0.54 1.40 15 10 C -0.21 -4.68 9.81 -38.51 -0.38 -5.06 15 11 C -0.04 -0.82 6.45 -38.40 -0.25 -1.07 15 12 S 0.04 0.79 23.22 -107.50 -2.50 -1.71 15 13 C -0.37 -6.99 6.18 -39.15 -0.24 -7.23 15 14 C 0.41 6.98 11.46 32.10 0.37 7.34 15 15 O -0.50 -9.84 17.45 5.46 0.10 -9.74 15 16 C 0.03 0.69 9.78 -39.97 -0.39 0.30 15 17 C -0.22 -4.72 5.87 -106.91 -0.63 -5.35 15 18 C -0.07 -1.60 9.95 -39.09 -0.39 -1.99 15 19 C 0.03 0.59 6.72 -39.36 -0.26 0.32 15 20 F -0.14 -3.41 14.97 2.25 0.03 -3.38 15 21 H 0.30 7.20 8.13 -40.82 -0.33 6.87 15 22 H 0.11 2.33 8.06 -52.48 -0.42 1.91 15 23 H 0.08 1.10 8.06 -52.49 -0.42 0.68 15 24 H 0.13 2.44 7.93 -52.48 -0.42 2.03 15 25 H 0.12 2.20 8.06 -52.49 -0.42 1.77 15 LS Contribution 251.71 15.07 3.79 3.79 Total: -1.00 -25.04 251.71 -7.32 -32.35 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -1.23 Total: 2.45 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -3.10 Total: -21.29 kcal Atomic # 7 Polarization: -16.86 SS G_CDS: 0.70 Total: -16.16 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.10 Total: -9.74 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.03 Total: -3.38 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.11 Total: 13.68 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.50 Total: -1.71 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -25.04 -7.32 -32.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396293426.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.127 kcal (2) G-P(sol) polarization free energy of solvation -25.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds