Wall clock time and date at job start Mon Mar 30 2020 06:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31032 * 1 3 3 Si 1.86806 * 119.99847 * 2 1 4 4 H 1.48497 * 109.47147 * 274.05638 * 3 2 1 5 5 H 1.48499 * 109.47056 * 34.05966 * 3 2 1 6 6 H 1.48498 * 109.47023 * 154.05910 * 3 2 1 7 7 C 1.39773 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00147 * 340.60484 * 7 2 1 9 9 C 1.40769 * 119.99977 * 160.61190 * 7 2 1 10 10 C 1.36402 * 123.29201 * 337.27325 * 9 7 2 11 11 S 1.69981 * 111.93953 * 179.77909 * 10 9 7 12 12 C 1.75761 * 93.22557 * 0.34371 * 11 10 9 13 13 C 1.39239 * 110.23401 * 359.65745 * 12 11 10 14 14 C 1.40549 * 119.38488 * 180.24951 * 13 12 11 15 15 C 1.37644 * 120.80866 * 359.97438 * 14 13 12 16 16 C 1.38381 * 120.49611 * 0.02562 * 15 14 13 17 17 F 1.35095 * 120.04863 * 179.97438 * 16 15 14 18 18 C 1.39837 * 119.89745 * 359.97438 * 16 15 14 19 19 C 1.46540 * 120.04839 * 180.02562 * 18 16 15 20 20 O 1.21338 * 119.99316 * 179.97438 * 19 18 16 21 21 H 0.96998 * 120.00057 * 359.97438 * 1 2 3 22 22 H 1.07998 * 124.02887 * 0.04060 * 10 9 7 23 23 H 1.08000 * 119.59672 * 180.02562 * 14 13 12 24 24 H 1.07990 * 119.75263 * 179.97438 * 15 14 13 25 25 H 1.07998 * 119.99752 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 2.4060 2.0960 -1.3965 5 1 1.4873 2.6264 0.7841 6 1 3.5821 1.4170 0.6124 7 6 2.0092 -1.2105 -0.0005 8 1 1.5152 -2.1194 0.3096 9 6 3.3570 -1.2449 -0.4053 10 6 3.9214 -0.2993 -1.2101 11 16 5.5634 -0.6196 -1.5113 12 6 5.5562 -2.0885 -0.5463 13 6 4.2919 -2.3018 -0.0032 14 6 4.0717 -3.4263 0.8106 15 6 5.0887 -4.3155 1.0748 16 6 6.3506 -4.1174 0.5426 17 9 7.3422 -4.9955 0.8081 18 6 6.5976 -3.0069 -0.2706 19 6 7.9326 -2.7942 -0.8364 20 8 8.1457 -1.8305 -1.5422 21 1 -0.4850 0.8400 0.0004 22 1 3.3896 0.5536 -1.6052 23 1 3.0923 -3.5953 1.2333 24 1 4.9006 -5.1736 1.7028 25 1 8.7265 -3.4952 -0.6251 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396293446.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:16 Heat of formation + Delta-G solvation = -46.081290 kcal Electronic energy + Delta-G solvation = -15215.062836 eV Core-core repulsion = 12392.262307 eV Total energy + Delta-G solvation = -2822.800529 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.83571 -39.23827 -37.96556 -35.00859 -32.78536 -31.00605 -28.79985 -26.23225 -24.34832 -22.77666 -21.07104 -19.79690 -17.88640 -16.96140 -16.84234 -15.99120 -15.54330 -14.97788 -14.90302 -14.60283 -14.08827 -13.84546 -13.24251 -13.06017 -12.63945 -12.56677 -12.11487 -11.53851 -11.22830 -10.98473 -10.61942 -10.18550 -9.89876 -9.83810 -9.37987 -9.22289 -8.90227 -7.73086 -7.15497 -7.10121 -4.59809 0.76608 1.45723 2.47950 2.55016 2.94590 3.11216 3.21545 3.38253 3.54900 3.92438 4.04313 4.40974 4.51058 4.97036 5.12546 5.19213 5.48581 5.76169 5.92335 6.13901 6.33545 6.44869 6.60760 6.84294 7.05423 7.30048 7.44468 7.65900 8.09134 8.24315 8.60190 9.88417 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.030271 B = 0.008484 C = 0.006869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.755569 B = 3299.526743 C = 4075.437432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.087 3.913 3 Si 0.918 3.082 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.241 1.241 7 C -0.413 4.413 8 H 0.093 0.907 9 C 0.088 3.912 10 C -0.484 4.484 11 S 0.156 5.844 12 C -0.076 4.076 13 C -0.087 4.087 14 C -0.002 4.002 15 C -0.199 4.199 16 C 0.157 3.843 17 F -0.137 7.137 18 C -0.220 4.220 19 C 0.375 3.625 20 O -0.455 6.455 21 H 0.288 0.712 22 H 0.140 0.860 23 H 0.137 0.863 24 H 0.136 0.864 25 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.080 -5.231 2.107 9.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.134 4.134 3 Si 0.745 3.255 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.164 1.164 7 C -0.444 4.444 8 H 0.111 0.889 9 C 0.080 3.920 10 C -0.619 4.619 11 S 0.423 5.577 12 C -0.194 4.194 13 C -0.097 4.097 14 C -0.022 4.022 15 C -0.222 4.222 16 C 0.136 3.864 17 F -0.116 7.116 18 C -0.229 4.229 19 C 0.235 3.765 20 O -0.330 6.330 21 H 0.099 0.901 22 H 0.157 0.843 23 H 0.155 0.845 24 H 0.154 0.846 25 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.916 -3.757 0.860 9.713 hybrid contribution -1.034 -0.249 0.986 1.450 sum 7.882 -4.006 1.846 9.032 Atomic orbital electron populations 1.69760 1.08063 1.30698 1.33671 1.26139 0.94744 1.01975 0.90541 0.86121 0.81232 0.79166 0.78938 1.19785 1.22128 1.16386 1.18974 0.92608 0.96358 1.36410 0.88903 1.17375 0.93036 0.89430 0.92195 1.24016 1.00736 1.13669 1.23476 1.82392 1.08175 1.16352 1.50757 1.22859 0.95414 0.99665 1.01488 1.19586 0.92782 0.97487 0.99876 1.21008 0.98522 0.90244 0.92467 1.20666 0.91800 1.03153 1.06617 1.17546 0.85268 0.87139 0.96438 1.91454 1.60681 1.67241 1.92208 1.19937 0.97095 0.98065 1.07851 1.23613 0.89285 0.86332 0.77312 1.90517 1.83876 1.28983 1.29640 0.90114 0.84254 0.84477 0.84603 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.44 13.94 55.54 0.77 -19.67 15 2 C 0.09 2.20 5.45 -17.32 -0.09 2.10 15 3 Si 0.92 20.79 24.56 -169.99 -4.17 16.61 15 4 H -0.27 -6.10 6.66 56.52 0.38 -5.72 15 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 15 6 H -0.24 -5.62 6.77 56.52 0.38 -5.23 15 7 C -0.41 -10.56 9.58 -38.05 -0.36 -10.93 15 8 H 0.09 2.39 7.87 -52.49 -0.41 1.98 15 9 C 0.09 2.16 5.34 -106.17 -0.57 1.59 15 10 C -0.48 -11.76 8.08 30.07 0.24 -11.52 15 11 S 0.16 3.42 21.06 -107.50 -2.26 1.16 15 12 C -0.08 -1.60 6.31 -37.94 -0.24 -1.84 15 13 C -0.09 -1.89 6.02 -105.23 -0.63 -2.52 15 14 C 0.00 -0.04 9.84 -38.93 -0.38 -0.42 15 15 C -0.20 -3.04 9.97 -39.75 -0.40 -3.43 15 16 C 0.16 2.48 7.29 -38.93 -0.28 2.19 15 17 F -0.14 -1.90 16.58 2.25 0.04 -1.86 15 18 C -0.22 -3.92 5.90 -104.69 -0.62 -4.54 15 19 C 0.38 6.00 11.22 34.08 0.38 6.38 15 20 O -0.46 -8.63 15.77 5.51 0.09 -8.54 15 21 H 0.29 6.70 8.30 -40.82 -0.34 6.37 15 22 H 0.14 3.44 4.35 -52.49 -0.23 3.21 15 23 H 0.14 2.24 7.87 -52.49 -0.41 1.83 15 24 H 0.14 1.63 8.06 -52.49 -0.42 1.21 15 25 H 0.10 1.19 7.71 -52.49 -0.40 0.78 15 LS Contribution 241.58 15.07 3.64 3.64 Total: -1.00 -27.22 241.58 -5.91 -33.13 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -1.06 Total: -1.55 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -2.95 Total: -22.93 kcal Atomic # 7 Polarization: -20.44 SS G_CDS: 0.77 Total: -19.67 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.17 Total: 16.61 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -2.26 Total: 1.16 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.22 -5.91 -33.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396293446.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.952 kcal (2) G-P(sol) polarization free energy of solvation -27.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds