Wall clock time and date at job start Mon Mar 30 2020 06:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86794 * 119.99937 * 2 1 4 4 H 1.48500 * 109.47382 * 359.97438 * 3 2 1 5 5 H 1.48508 * 109.47162 * 119.99930 * 3 2 1 6 6 H 1.48500 * 109.47043 * 240.00117 * 3 2 1 7 7 C 1.39883 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99634 * 141.20016 * 7 2 1 9 9 C 1.41197 * 119.99697 * 321.19153 * 7 2 1 10 10 C 1.39728 * 120.02573 * 143.84017 * 9 7 2 11 11 C 1.40993 * 120.04535 * 179.97438 * 10 9 7 12 12 C 1.40436 * 128.62505 * 180.02562 * 11 10 9 13 13 C 1.34065 * 115.50851 * 179.97438 * 12 11 10 14 14 C 1.41707 * 124.62675 * 180.02562 * 13 12 11 15 15 O 1.21399 * 119.99469 * 359.96931 * 14 13 12 16 16 S 1.75444 * 110.75172 * 359.97438 * 13 12 11 17 17 C 1.40597 * 118.82397 * 0.02562 * 11 10 9 18 18 C 1.40323 * 120.28660 * 0.02857 * 17 11 10 19 19 C 1.35923 * 120.84006 * 359.66628 * 18 17 11 20 20 F 1.35105 * 119.97220 * 180.31419 * 19 18 17 21 21 H 0.97005 * 119.99816 * 174.23472 * 1 2 3 22 22 H 1.08002 * 119.97723 * 359.95560 * 10 9 7 23 23 H 1.07997 * 122.24090 * 359.93881 * 12 11 10 24 24 H 1.07992 * 120.00055 * 179.97438 * 14 13 12 25 25 H 1.08000 * 119.57804 * 180.02562 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 1.2780 2.7465 -0.0006 5 1 3.0967 1.6964 1.2126 6 1 3.0966 1.6964 -1.2125 7 6 2.0084 -1.2114 -0.0005 8 1 2.9096 -1.3143 -0.5867 9 6 1.5361 -2.2996 0.7653 10 6 1.6673 -3.6040 0.2820 11 6 1.1963 -4.6909 1.0467 12 6 1.2349 -6.0607 0.7397 13 6 0.7074 -6.8749 1.6650 14 6 0.6454 -8.2863 1.5546 15 8 1.0895 -8.8379 0.5686 16 16 0.1054 -5.9546 3.0321 17 6 0.5978 -4.4342 2.2927 18 6 0.4741 -3.1170 2.7605 19 6 0.9341 -2.0704 2.0252 20 9 0.8116 -0.8097 2.4954 21 1 -0.4850 -0.8359 -0.0844 22 1 2.1295 -3.7798 -0.6782 23 1 1.6605 -6.4332 -0.1803 24 1 0.2032 -8.8710 2.3475 25 1 0.0128 -2.9330 3.7195 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396293548.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:55 Heat of formation + Delta-G solvation = -65.851733 kcal Electronic energy + Delta-G solvation = -15062.465588 eV Core-core repulsion = 12238.807749 eV Total energy + Delta-G solvation = -2823.657840 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.56621 -40.67173 -39.67285 -36.70832 -34.98679 -32.01967 -30.63248 -27.36548 -26.20042 -23.87941 -22.75463 -21.06609 -20.00205 -18.77274 -18.19486 -17.37292 -16.44676 -16.32626 -16.09997 -15.88916 -15.67233 -15.56006 -14.72043 -14.45764 -14.20048 -14.02344 -13.50257 -13.40987 -12.91810 -12.37290 -12.04536 -11.93787 -11.64941 -11.45315 -11.07072 -10.79945 -10.51298 -9.49857 -9.30017 -8.67777 -6.54639 -0.84987 0.44274 0.59368 0.84854 0.97051 1.46502 1.53172 1.76854 1.87880 2.25898 2.44948 3.07353 3.36610 3.68917 3.81530 4.15382 4.29361 4.39914 4.52331 4.76097 4.93837 4.99981 5.27679 5.34842 5.52909 5.55991 5.89781 5.99479 6.33587 6.49623 6.64934 7.85225 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.045583 B = 0.006130 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.121806 B = 4566.821898 C = 5003.178349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.026 3.974 3 Si 1.101 2.899 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.569 4.569 8 H 0.085 0.915 9 C 0.048 3.952 10 C -0.194 4.194 11 C -0.069 4.069 12 C -0.041 4.041 13 C -0.287 4.287 14 C 0.420 3.580 15 O -0.497 6.497 16 S 0.154 5.846 17 C -0.215 4.215 18 C -0.104 4.104 19 C 0.032 3.968 20 F -0.150 7.150 21 H 0.279 0.721 22 H 0.114 0.886 23 H 0.146 0.854 24 H 0.157 0.843 25 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.129 -7.255 5.253 8.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.196 4.196 3 Si 0.918 3.082 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.176 1.176 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.043 3.957 10 C -0.217 4.217 11 C -0.075 4.075 12 C -0.076 4.076 13 C -0.404 4.404 14 C 0.281 3.719 15 O -0.375 6.375 16 S 0.419 5.581 17 C -0.330 4.330 18 C -0.127 4.127 19 C 0.010 3.990 20 F -0.128 7.128 21 H 0.090 0.910 22 H 0.132 0.868 23 H 0.164 0.836 24 H 0.173 0.827 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.910 -6.356 6.191 8.919 hybrid contribution 0.750 -0.702 -1.413 1.747 sum -0.160 -7.058 4.778 8.525 Atomic orbital electron populations 1.70649 1.09322 1.32751 1.27532 1.28228 0.95097 1.07278 0.88954 0.83228 0.75346 0.70341 0.79287 1.19444 1.19178 1.17552 1.20453 1.12469 0.97603 1.29019 0.89656 1.17691 0.92553 0.94377 0.91045 1.20930 1.10495 0.90383 0.99935 1.18299 1.01061 0.93524 0.94650 1.20599 0.96240 0.91015 0.99759 1.23922 1.12774 1.01867 1.01805 1.22540 0.74242 0.86138 0.88931 1.90566 1.38972 1.74080 1.33848 1.83030 1.63898 0.92489 1.18701 1.22360 1.12791 0.97394 1.00493 1.19818 1.02600 0.89784 1.00539 1.17870 1.07789 0.78669 0.94639 1.91361 1.94352 1.38925 1.88196 0.91012 0.86811 0.83638 0.82735 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -41.15 12.68 21.82 0.28 -40.88 15 2 C 0.03 1.28 3.78 85.23 0.32 1.61 15 3 Si 1.10 42.59 30.06 68.60 2.06 44.65 15 4 H -0.27 -10.25 7.11 99.48 0.71 -9.54 15 5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 15 6 H -0.25 -8.74 7.11 99.48 0.71 -8.03 15 7 C -0.57 -29.41 8.70 23.40 0.20 -29.20 15 8 H 0.09 4.31 8.05 -2.91 -0.02 4.29 15 9 C 0.05 2.42 5.01 -21.39 -0.11 2.31 15 10 C -0.19 -9.07 9.82 23.31 0.23 -8.84 15 11 C -0.07 -2.88 5.86 -21.49 -0.13 -3.00 15 12 C -0.04 -1.47 9.74 21.85 0.21 -1.26 15 13 C -0.29 -8.51 6.13 22.18 0.14 -8.37 15 14 C 0.42 10.13 11.45 68.68 0.79 10.91 15 15 O -0.50 -15.59 17.41 -3.40 -0.06 -15.65 15 16 S 0.15 4.43 23.21 -56.49 -1.31 3.11 15 17 C -0.21 -8.49 6.52 23.35 0.15 -8.34 15 18 C -0.10 -4.42 9.95 22.24 0.22 -4.20 15 19 C 0.03 1.58 6.73 22.54 0.15 1.73 15 20 F -0.15 -7.59 14.97 44.97 0.67 -6.92 15 21 H 0.28 15.19 8.12 -92.70 -0.75 14.44 15 22 H 0.11 5.08 8.06 -2.91 -0.02 5.06 15 23 H 0.15 4.93 7.89 -2.91 -0.02 4.91 15 24 H 0.16 2.11 8.06 -2.91 -0.02 2.09 15 25 H 0.14 5.03 8.06 -2.91 -0.02 5.01 15 Total: -1.00 -58.56 251.57 5.07 -53.49 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 1.25 Total: 8.85 kcal Atomic # 6 Polarization: -48.84 SS G_CDS: 2.18 Total: -46.66 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.28 Total: -40.88 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.06 Total: -15.65 kcal Atomic # 9 Polarization: -7.59 SS G_CDS: 0.67 Total: -6.92 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.06 Total: 44.65 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -1.31 Total: 3.11 kcal Total: -58.56 5.07 -53.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396293548.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.366 kcal (2) G-P(sol) polarization free energy of solvation -58.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds