Wall clock time and date at job start Mon Mar 30 2020 06:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48500 * 109.46870 * 274.98602 * 3 2 1 5 5 H 1.48504 * 109.46722 * 34.98423 * 3 2 1 6 6 H 1.48495 * 109.47221 * 154.98306 * 3 2 1 7 7 C 1.40224 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99585 * 186.60564 * 7 2 1 9 9 C 1.39874 * 120.00144 * 6.60923 * 7 2 1 10 10 C 1.36917 * 124.82592 * 173.26020 * 9 7 2 11 11 C 1.39860 * 115.03459 * 180.02562 * 10 9 7 12 12 C 1.41843 * 128.42511 * 179.97438 * 11 10 9 13 13 C 1.37434 * 120.76046 * 179.97438 * 12 11 10 14 14 F 1.35091 * 119.63867 * 180.30207 * 13 12 11 15 15 C 1.38555 * 120.72521 * 0.03377 * 13 12 11 16 16 C 1.39585 * 120.01249 * 359.97438 * 15 13 12 17 17 C 1.46686 * 119.98965 * 180.02562 * 16 15 13 18 18 O 1.21317 * 120.00285 * 180.02562 * 17 16 15 19 19 C 1.40303 * 112.85153 * 0.02562 * 11 10 9 20 20 S 1.75453 * 124.82633 * 353.30141 * 9 7 2 21 21 H 0.97002 * 120.00293 * 359.97438 * 1 2 3 22 22 H 1.08004 * 122.48038 * 0.05779 * 10 9 7 23 23 H 1.08004 * 119.62509 * 0.02939 * 12 11 10 24 24 H 1.08000 * 119.99178 * 179.97438 * 15 13 12 25 25 H 1.08001 * 119.99604 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3834 2.1072 -1.3948 5 1 1.4953 2.6199 0.8028 6 1 3.5876 1.4121 0.5920 7 6 2.0085 -1.2144 0.0005 8 1 3.0832 -1.2174 0.1082 9 6 1.3161 -2.4218 -0.1383 10 6 1.9056 -3.6491 -0.2825 11 6 1.0168 -4.7218 -0.4058 12 6 1.3144 -6.0992 -0.5675 13 6 0.3072 -7.0283 -0.6732 14 9 0.6166 -8.3351 -0.8204 15 6 -1.0219 -6.6401 -0.6250 16 6 -1.3504 -5.2927 -0.4670 17 6 -2.7578 -4.8823 -0.4154 18 8 -3.0436 -3.7112 -0.2785 19 6 -0.3277 -4.3237 -0.3574 20 16 -0.4313 -2.5788 -0.1536 21 1 -0.4851 0.8400 0.0004 22 1 2.9777 -3.7792 -0.2992 23 1 2.3444 -6.4218 -0.6070 24 1 -1.8039 -7.3801 -0.7097 25 1 -3.5395 -5.6227 -0.4993 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396293665.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:01 Heat of formation + Delta-G solvation = -78.070638 kcal Electronic energy + Delta-G solvation = -14992.743041 eV Core-core repulsion = 12168.555350 eV Total energy + Delta-G solvation = -2824.187691 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.76654 -40.43820 -39.08782 -36.73116 -34.86983 -31.89065 -30.75542 -27.41711 -25.86615 -24.01310 -22.11775 -21.16543 -19.72751 -18.07025 -17.89696 -17.53042 -16.62570 -16.48049 -16.23960 -15.73912 -15.51015 -15.21295 -14.86986 -14.14169 -13.99507 -13.75047 -13.38790 -13.20764 -13.06666 -12.31958 -12.09394 -11.99838 -11.93167 -11.16967 -11.07574 -10.49215 -10.26644 -9.35106 -8.98295 -8.36660 -6.65573 -0.40248 0.32667 1.06319 1.31794 1.35040 1.51091 1.53493 1.87984 1.93911 2.10693 2.74457 3.08849 3.28025 3.57954 4.05454 4.14938 4.50427 4.67620 4.82613 4.89334 4.99819 5.17294 5.23012 5.37061 5.54235 5.79920 5.97586 6.10504 6.34299 6.46664 6.58830 7.88165 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.033006 B = 0.007243 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.121925 B = 3864.957226 C = 4699.242925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.015 3.985 3 Si 1.016 2.984 4 H -0.257 1.257 5 H -0.258 1.258 6 H -0.250 1.250 7 C -0.402 4.402 8 H 0.106 0.894 9 C 0.007 3.993 10 C -0.395 4.395 11 C 0.007 3.993 12 C -0.174 4.174 13 C 0.091 3.909 14 F -0.145 7.145 15 C -0.149 4.149 16 C -0.123 4.123 17 C 0.380 3.620 18 O -0.490 6.490 19 C -0.254 4.254 20 S 0.167 5.833 21 H 0.314 0.686 22 H 0.108 0.892 23 H 0.128 0.872 24 H 0.179 0.821 25 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 -4.015 -0.704 4.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.204 4.204 3 Si 0.833 3.167 4 H -0.181 1.181 5 H -0.182 1.182 6 H -0.173 1.173 7 C -0.435 4.435 8 H 0.124 0.876 9 C -0.112 4.112 10 C -0.420 4.420 11 C -0.001 4.001 12 C -0.195 4.195 13 C 0.069 3.931 14 F -0.124 7.124 15 C -0.169 4.169 16 C -0.130 4.130 17 C 0.241 3.759 18 O -0.365 6.365 19 C -0.370 4.370 20 S 0.428 5.572 21 H 0.128 0.872 22 H 0.126 0.874 23 H 0.146 0.854 24 H 0.196 0.804 25 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.984 -2.261 -0.502 4.609 hybrid contribution 2.026 -0.779 -0.159 2.177 sum -1.958 -3.040 -0.661 3.676 Atomic orbital electron populations 1.68702 1.09334 1.33011 1.30793 1.27425 0.95828 1.06241 0.90948 0.84641 0.78833 0.73194 0.80008 1.18093 1.18218 1.17311 1.19771 0.96796 0.89455 1.37468 0.87597 1.22145 0.97289 0.96804 0.94937 1.19689 0.98084 0.91075 1.33116 1.17942 0.92075 0.93207 0.96844 1.21016 0.99225 0.91314 1.07915 1.17096 0.93911 0.77312 1.04741 1.91436 1.94056 1.33173 1.93688 1.21096 0.94927 0.95070 1.05823 1.20404 0.95599 0.92457 1.04492 1.24765 0.90521 0.91215 0.69407 1.90542 1.85747 1.24284 1.35963 1.24376 0.96629 1.02951 1.13001 1.85433 1.02402 0.93170 1.76148 0.87185 0.87434 0.85355 0.80360 0.81488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.84 10.62 21.88 0.23 -37.61 15 2 C 0.02 0.70 5.49 85.34 0.47 1.17 15 3 Si 1.02 33.53 29.57 68.60 2.03 35.56 15 4 H -0.26 -8.20 7.11 99.48 0.71 -7.49 15 5 H -0.26 -8.00 7.11 99.48 0.71 -7.29 15 6 H -0.25 -7.96 7.11 99.48 0.71 -7.25 15 7 C -0.40 -20.22 9.26 23.15 0.21 -20.01 15 8 H 0.11 4.99 7.86 -2.91 -0.02 4.97 15 9 C 0.01 0.40 6.10 22.36 0.14 0.54 15 10 C -0.40 -20.64 10.14 22.35 0.23 -20.41 15 11 C 0.01 0.35 5.85 -21.49 -0.13 0.23 15 12 C -0.17 -7.25 10.04 22.97 0.23 -7.01 15 13 C 0.09 3.30 7.24 22.16 0.16 3.46 15 14 F -0.14 -4.77 17.25 44.97 0.78 -3.99 15 15 C -0.15 -4.77 9.75 22.67 0.22 -4.54 15 16 C -0.12 -4.71 5.89 -19.99 -0.12 -4.83 15 17 C 0.38 12.22 11.42 70.03 0.80 13.02 15 18 O -0.49 -20.37 15.76 -3.15 -0.05 -20.42 15 19 C -0.25 -12.19 6.34 23.53 0.15 -12.04 15 20 S 0.17 8.71 18.25 -56.49 -1.03 7.68 15 21 H 0.31 13.23 8.29 -92.71 -0.77 12.46 15 22 H 0.11 5.38 8.06 -2.91 -0.02 5.35 15 23 H 0.13 4.91 8.06 -2.91 -0.02 4.88 15 24 H 0.18 3.84 8.06 -2.91 -0.02 3.82 15 25 H 0.17 3.05 8.06 -2.91 -0.02 3.03 15 Total: -1.00 -62.31 248.69 5.56 -56.76 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.24 Total: 12.46 kcal Atomic # 6 Polarization: -52.80 SS G_CDS: 2.36 Total: -50.44 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.23 Total: -37.61 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.05 Total: -20.42 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.78 Total: -3.99 kcal Atomic # 14 Polarization: 33.53 SS G_CDS: 2.03 Total: 35.56 kcal Atomic # 16 Polarization: 8.71 SS G_CDS: -1.03 Total: 7.68 kcal Total: -62.31 5.56 -56.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396293665.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.314 kcal (2) G-P(sol) polarization free energy of solvation -62.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds