Wall clock time and date at job start Mon Mar 30 2020 06:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48505 * 109.46849 * 269.39608 * 3 2 1 5 5 H 1.48494 * 109.47339 * 29.39640 * 3 2 1 6 6 H 1.48500 * 109.47365 * 149.40358 * 3 2 1 7 7 C 1.39990 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99361 * 354.44883 * 7 2 1 9 9 C 1.40755 * 120.00500 * 174.44649 * 7 2 1 10 10 C 1.40424 * 120.42311 * 319.47215 * 9 7 2 11 11 C 1.37818 * 119.90781 * 180.02562 * 10 9 7 12 12 F 1.35091 * 119.44481 * 180.02562 * 11 10 9 13 13 C 1.38301 * 121.10699 * 359.97438 * 11 10 9 14 14 C 1.39857 * 121.45575 * 0.02562 * 13 11 10 15 15 S 1.75830 * 130.29936 * 179.97438 * 14 13 11 16 16 C 1.70026 * 93.09846 * 180.02562 * 15 14 13 17 17 C 1.35962 * 111.90266 * 0.02562 * 16 15 14 18 18 C 1.46150 * 123.19975 * 180.26723 * 17 16 15 19 19 O 1.21383 * 119.99973 * 356.09484 * 18 17 16 20 20 C 1.39218 * 119.71548 * 0.02562 * 14 13 11 21 21 H 0.97002 * 119.99601 * 0.02562 * 1 2 3 22 22 H 1.07993 * 120.04854 * 0.04918 * 10 9 7 23 23 H 1.07990 * 119.27237 * 180.02562 * 13 11 10 24 24 H 1.08004 * 124.04913 * 180.02562 * 16 15 14 25 25 H 1.08003 * 120.00006 * 176.09662 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.5026 2.0390 -1.4001 5 1 1.4335 2.6563 0.6872 6 1 3.5335 1.4439 0.7126 7 6 2.0083 -1.2123 0.0005 8 1 1.4721 -2.1454 0.0914 9 6 3.4109 -1.2152 -0.1174 10 6 4.0517 -0.3358 -1.0051 11 6 5.4256 -0.3481 -1.1125 12 9 6.0324 0.5023 -1.9691 13 6 6.1937 -1.2156 -0.3573 14 6 5.6096 -2.1129 0.5425 15 16 6.3502 -3.3027 1.6043 16 6 4.8527 -3.8194 2.2220 17 6 3.8137 -3.1398 1.6677 18 6 2.4174 -3.3822 2.0249 19 8 2.1351 -4.2725 2.8001 20 6 4.2253 -2.1416 0.6880 21 1 -0.4850 0.8401 -0.0004 22 1 3.4687 0.3494 -1.6025 23 1 7.2681 -1.1997 -0.4648 24 1 4.7403 -4.5946 2.9655 25 1 1.6369 -2.7693 1.5989 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396293806.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:50 Heat of formation + Delta-G solvation = -48.048828 kcal Electronic energy + Delta-G solvation = -15385.169876 eV Core-core repulsion = 12562.284028 eV Total energy + Delta-G solvation = -2822.885848 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.20284 -38.91796 -37.60801 -34.41549 -33.57211 -30.93139 -28.33744 -25.70865 -25.21597 -21.87260 -21.35712 -19.30964 -18.30585 -16.91252 -16.37995 -15.56799 -15.42647 -14.91261 -14.74218 -14.34581 -14.16165 -13.72482 -13.34120 -12.59572 -12.48579 -12.30128 -12.03065 -11.65545 -11.53290 -11.26926 -10.83052 -10.28349 -10.03015 -9.96609 -9.53079 -9.08310 -8.62636 -7.74414 -7.33209 -7.15479 -4.95206 1.09010 2.00846 2.02927 2.14661 2.50033 2.92226 3.00054 3.09497 3.52867 3.71628 4.06919 4.77383 5.16840 5.23401 5.32948 5.70213 5.83951 6.02969 6.12127 6.33213 6.51143 6.54405 6.81030 6.95871 7.03319 7.25002 7.50188 7.82649 8.02688 8.09332 8.27051 9.66627 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.017731 B = 0.012321 C = 0.007669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.775822 B = 2272.072798 C = 3649.965844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.084 3.916 3 Si 0.908 3.092 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.240 1.240 7 C -0.429 4.429 8 H 0.110 0.890 9 C 0.150 3.850 10 C -0.288 4.288 11 C 0.167 3.833 12 F -0.155 7.155 13 C -0.252 4.252 14 C -0.083 4.083 15 S 0.128 5.872 16 C -0.217 4.217 17 C -0.147 4.147 18 C 0.392 3.608 19 O -0.489 6.489 20 C -0.135 4.135 21 H 0.295 0.705 22 H 0.123 0.877 23 H 0.113 0.887 24 H 0.164 0.836 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.257 -0.317 0.803 6.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.163 1.163 7 C -0.455 4.455 8 H 0.127 0.873 9 C 0.144 3.856 10 C -0.310 4.310 11 C 0.145 3.855 12 F -0.134 7.134 13 C -0.277 4.277 14 C -0.198 4.198 15 S 0.395 5.605 16 C -0.354 4.354 17 C -0.162 4.162 18 C 0.251 3.749 19 O -0.365 6.365 20 C -0.141 4.141 21 H 0.106 0.894 22 H 0.141 0.859 23 H 0.131 0.869 24 H 0.181 0.819 25 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.301 -1.161 1.536 7.551 hybrid contribution -1.018 1.349 -0.530 1.771 sum 6.284 0.188 1.006 6.367 Atomic orbital electron populations 1.69577 1.07931 1.31329 1.31934 1.26203 0.95030 1.01802 0.90837 0.86290 0.81018 0.79138 0.80273 1.18771 1.21032 1.16336 1.19568 0.89661 0.95863 1.40431 0.87286 1.18115 0.92664 0.87754 0.87021 1.20804 0.92085 1.10471 1.07596 1.17120 0.90596 0.88837 0.88913 1.91394 1.84177 1.69102 1.68703 1.19359 0.98299 1.04148 1.05909 1.22036 0.96044 1.00671 1.01040 1.82404 1.07059 1.33728 1.37284 1.25142 0.97075 1.06039 1.07105 1.20766 0.96514 0.98772 1.00147 1.24406 0.90935 0.82324 0.77211 1.90439 1.86170 1.30284 1.29621 1.20027 0.91067 1.02458 1.00497 0.89429 0.85942 0.86888 0.81877 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.25 13.93 55.55 0.77 -17.47 15 2 C 0.08 1.91 5.50 -17.32 -0.10 1.82 15 3 Si 0.91 18.67 24.55 -169.99 -4.17 14.50 15 4 H -0.26 -5.29 6.74 56.52 0.38 -4.91 15 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 6 H -0.24 -5.15 6.73 56.52 0.38 -4.77 15 7 C -0.43 -9.88 8.07 -37.97 -0.31 -10.18 15 8 H 0.11 2.53 5.99 -52.48 -0.31 2.22 15 9 C 0.15 3.40 5.13 -104.44 -0.54 2.86 15 10 C -0.29 -6.37 6.93 -38.91 -0.27 -6.64 15 11 C 0.17 3.53 7.24 -39.71 -0.29 3.24 15 12 F -0.15 -3.11 17.24 2.25 0.04 -3.07 15 13 C -0.25 -5.03 9.99 -38.95 -0.39 -5.42 15 14 C -0.08 -1.66 6.45 -38.61 -0.25 -1.91 15 15 S 0.13 2.12 22.97 -107.50 -2.47 -0.35 15 16 C -0.22 -3.89 10.41 29.92 0.31 -3.58 15 17 C -0.15 -2.97 5.97 -104.52 -0.62 -3.59 15 18 C 0.39 7.90 10.95 33.91 0.37 8.27 15 19 O -0.49 -10.48 17.50 5.47 0.10 -10.38 15 20 C -0.13 -2.91 6.20 -102.82 -0.64 -3.54 15 21 H 0.29 6.21 8.30 -40.82 -0.34 5.87 15 22 H 0.12 2.67 5.16 -52.49 -0.27 2.40 15 23 H 0.11 2.00 8.06 -52.49 -0.42 1.58 15 24 H 0.16 2.65 7.98 -52.48 -0.42 2.23 15 25 H 0.13 2.62 4.82 -52.48 -0.25 2.37 15 LS Contribution 239.90 15.07 3.62 3.62 Total: -1.00 -24.40 239.90 -5.69 -30.08 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -0.86 Total: 1.76 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -2.71 Total: -18.68 kcal Atomic # 7 Polarization: -18.25 SS G_CDS: 0.77 Total: -17.47 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.10 Total: -10.38 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.17 Total: 14.50 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.47 Total: -0.35 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -24.40 -5.69 -30.08 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396293806.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.968 kcal (2) G-P(sol) polarization free energy of solvation -24.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds