Wall clock time and date at job start Mon Mar 30 2020 06:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30574 * 1 3 3 Si 1.86801 * 119.99713 * 2 1 4 4 H 1.48503 * 109.47180 * 269.99757 * 3 2 1 5 5 H 1.48496 * 109.47316 * 29.99908 * 3 2 1 6 6 H 1.48501 * 109.47389 * 149.99865 * 3 2 1 7 7 C 1.40412 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00259 * 197.81032 * 7 2 1 9 9 C 1.40067 * 119.99652 * 17.80143 * 7 2 1 10 10 C 1.40774 * 120.24737 * 25.14731 * 9 7 2 11 11 C 1.35800 * 120.54517 * 179.74363 * 10 9 7 12 12 C 1.40169 * 121.05471 * 0.25207 * 11 10 9 13 13 C 1.46506 * 119.49657 * 179.97438 * 12 11 10 14 14 O 1.21369 * 119.99719 * 180.02562 * 13 12 11 15 15 C 1.41139 * 121.00546 * 359.97438 * 12 11 10 16 16 S 1.76016 * 130.73273 * 179.97438 * 15 12 11 17 17 C 1.75524 * 91.51755 * 180.02562 * 16 15 12 18 18 F 1.35095 * 124.69679 * 179.97438 * 17 16 15 19 19 C 1.33221 * 110.60221 * 0.02562 * 17 16 15 20 20 C 1.39744 * 119.84770 * 0.02562 * 15 12 11 21 21 H 0.96999 * 119.99931 * 0.02562 * 1 2 3 22 22 H 1.08000 * 119.73176 * 0.02562 * 10 9 7 23 23 H 1.07989 * 119.47426 * 180.27387 * 11 10 9 24 24 H 1.07989 * 120.00184 * 0.02562 * 13 12 11 25 25 H 1.08001 * 122.12644 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2397 1.6178 0.0000 4 1 2.4872 2.0465 -1.4001 5 1 1.4371 2.6527 0.7000 6 1 3.5372 1.4404 0.7001 7 6 2.0079 -1.2160 0.0005 8 1 3.0490 -1.2382 0.2866 9 6 1.3579 -2.4001 -0.3698 10 6 0.2351 -2.3573 -1.2178 11 6 -0.3966 -3.5021 -1.5849 12 6 0.0463 -4.7509 -1.1277 13 6 -0.6611 -5.9641 -1.5447 14 8 -0.2856 -7.0501 -1.1539 15 6 1.1635 -4.8573 -0.2717 16 16 1.9295 -6.2698 0.4468 17 6 3.1245 -5.2691 1.2540 18 9 4.1112 -5.7390 2.0480 19 6 2.9229 -3.9819 0.9760 20 6 1.8433 -3.7047 0.1311 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1243 -1.4067 -1.5833 23 1 -1.2537 -3.4495 -2.2397 24 1 -1.5166 -5.8922 -2.1998 25 1 3.5530 -3.2020 1.3776 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396294276.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:04 Heat of formation + Delta-G solvation = -62.617590 kcal Electronic energy + Delta-G solvation = -15119.800467 eV Core-core repulsion = 12296.282870 eV Total energy + Delta-G solvation = -2823.517597 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.76351 -40.26122 -38.97733 -36.46649 -35.26434 -32.05303 -29.72226 -28.01850 -25.05662 -23.88581 -21.92966 -21.50990 -19.96289 -18.38565 -17.57820 -17.21785 -16.70565 -16.66600 -16.33081 -16.12071 -15.11580 -14.99338 -14.62765 -14.26950 -13.92214 -13.75419 -13.64611 -13.15144 -12.89872 -12.41242 -11.93521 -11.79493 -11.68672 -11.50611 -11.23763 -10.29527 -10.18132 -9.22971 -9.03416 -8.78771 -6.62943 -0.03613 0.19375 0.45162 1.09293 1.33783 1.39826 1.53073 1.54177 1.93431 2.08707 2.57414 3.44387 3.54650 3.83831 4.33390 4.45639 4.62428 4.72929 4.88973 4.89752 4.98255 5.24796 5.29240 5.67247 5.75516 5.86299 5.90967 6.29914 6.44294 6.66312 6.93398 7.84781 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023364 B = 0.008471 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.146138 B = 3304.517111 C = 4423.040196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.037 3.963 3 Si 0.995 3.005 4 H -0.253 1.253 5 H -0.260 1.260 6 H -0.256 1.256 7 C -0.403 4.403 8 H 0.099 0.901 9 C 0.138 3.862 10 C -0.218 4.218 11 C -0.005 4.005 12 C -0.336 4.336 13 C 0.377 3.623 14 O -0.542 6.542 15 C -0.042 4.042 16 S 0.110 5.890 17 C -0.116 4.116 18 F -0.120 7.120 19 C -0.094 4.094 20 C -0.219 4.219 21 H 0.311 0.689 22 H 0.126 0.874 23 H 0.146 0.854 24 H 0.132 0.868 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.284 3.573 -2.224 4.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.189 4.189 3 Si 0.813 3.187 4 H -0.177 1.177 5 H -0.184 1.184 6 H -0.179 1.179 7 C -0.427 4.427 8 H 0.117 0.883 9 C 0.132 3.868 10 C -0.239 4.239 11 C -0.026 4.026 12 C -0.345 4.345 13 C 0.246 3.754 14 O -0.426 6.426 15 C -0.159 4.159 16 S 0.371 5.629 17 C -0.248 4.248 18 F -0.100 7.100 19 C -0.126 4.126 20 C -0.225 4.225 21 H 0.123 0.877 22 H 0.144 0.856 23 H 0.164 0.836 24 H 0.148 0.852 25 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.461 1.591 -1.939 2.550 hybrid contribution 0.793 1.993 0.467 2.195 sum 0.332 3.584 -1.472 3.888 Atomic orbital electron populations 1.69684 1.09476 1.33299 1.24870 1.27160 0.95677 1.05177 0.90881 0.84961 0.79105 0.74194 0.80406 1.17700 1.18360 1.17919 1.20374 0.99141 0.91747 1.31402 0.88273 1.18903 0.90861 0.89535 0.87491 1.20802 1.00715 0.98353 1.03991 1.20726 0.96803 0.90183 0.94851 1.19566 1.03794 0.96842 1.14287 1.24016 0.86209 0.85821 0.79337 1.90401 1.67051 1.31855 1.53319 1.22775 0.99048 0.94439 0.99619 1.84306 1.24117 1.07194 1.47329 1.21673 0.98669 0.96043 1.08396 1.91359 1.58547 1.88409 1.71664 1.19907 0.98646 0.94783 0.99226 1.18853 1.01639 0.94080 1.07939 0.87660 0.85601 0.83644 0.85176 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -30.48 10.97 21.91 0.24 -30.24 15 2 C 0.04 1.43 5.13 85.41 0.44 1.87 15 3 Si 1.00 29.11 29.60 68.60 2.03 31.14 15 4 H -0.25 -7.17 7.11 99.48 0.71 -6.47 15 5 H -0.26 -7.16 7.11 99.48 0.71 -6.46 15 6 H -0.26 -7.52 7.11 99.48 0.71 -6.81 15 7 C -0.40 -17.73 8.80 23.24 0.20 -17.52 15 8 H 0.10 4.16 7.52 -2.91 -0.02 4.14 15 9 C 0.14 6.52 5.75 -19.64 -0.11 6.41 15 10 C -0.22 -9.55 8.57 22.32 0.19 -9.36 15 11 C 0.00 -0.20 9.62 22.17 0.21 0.02 15 12 C -0.34 -14.33 5.89 -19.94 -0.12 -14.45 15 13 C 0.38 14.15 11.39 69.98 0.80 14.95 15 14 O -0.54 -23.86 15.72 -3.30 -0.05 -23.91 15 15 C -0.04 -1.98 6.33 23.35 0.15 -1.83 15 16 S 0.11 4.90 21.37 -56.49 -1.21 3.70 15 17 C -0.12 -5.12 8.30 66.69 0.55 -4.57 15 18 F -0.12 -5.02 17.32 44.97 0.78 -4.24 15 19 C -0.09 -4.26 9.77 21.53 0.21 -4.05 15 20 C -0.22 -10.52 6.02 -19.95 -0.12 -10.64 15 21 H 0.31 10.84 8.29 -92.71 -0.77 10.07 15 22 H 0.13 5.40 6.16 -2.91 -0.02 5.38 15 23 H 0.15 4.37 8.06 -2.92 -0.02 4.35 15 24 H 0.13 3.50 8.06 -2.92 -0.02 3.48 15 25 H 0.14 5.97 7.72 -2.91 -0.02 5.95 15 Total: -1.00 -54.53 247.66 5.44 -49.09 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 1.24 Total: 13.64 kcal Atomic # 6 Polarization: -41.58 SS G_CDS: 2.40 Total: -39.17 kcal Atomic # 7 Polarization: -30.48 SS G_CDS: 0.24 Total: -30.24 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.05 Total: -23.91 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.78 Total: -4.24 kcal Atomic # 14 Polarization: 29.11 SS G_CDS: 2.03 Total: 31.14 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -1.21 Total: 3.70 kcal Total: -54.53 5.44 -49.09 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396294276.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.526 kcal (2) G-P(sol) polarization free energy of solvation -54.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds