Wall clock time and date at job start Mon Mar 30 2020 06:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30717 * 1 3 3 Si 1.86800 * 119.99895 * 2 1 4 4 H 1.48500 * 109.47246 * 275.41855 * 3 2 1 5 5 H 1.48500 * 109.47238 * 35.42025 * 3 2 1 6 6 H 1.48499 * 109.47066 * 155.41893 * 3 2 1 7 7 C 1.40125 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99968 * 341.74729 * 7 2 1 9 9 C 1.40859 * 120.00391 * 161.75505 * 7 2 1 10 10 C 1.40380 * 120.16182 * 150.10354 * 9 7 2 11 11 C 1.39045 * 120.06994 * 180.23367 * 10 9 7 12 12 S 1.76053 * 130.17379 * 180.32836 * 11 10 9 13 13 C 1.75473 * 91.66405 * 179.55292 * 12 11 10 14 14 C 1.41765 * 124.76079 * 179.84707 * 13 12 11 15 15 O 1.21403 * 119.99730 * 359.97438 * 14 13 12 16 16 C 1.35692 * 110.47281 * 359.82655 * 13 12 11 17 17 C 1.39571 * 115.40465 * 0.02562 * 16 13 12 18 18 C 1.42546 * 128.34006 * 180.02562 * 17 16 13 19 19 F 1.35104 * 119.58158 * 359.97438 * 18 17 16 20 20 C 1.35280 * 120.83045 * 179.97438 * 18 17 16 21 21 H 0.96999 * 120.00118 * 359.97438 * 1 2 3 22 22 H 1.07999 * 119.96519 * 359.96084 * 10 9 7 23 23 H 1.07999 * 119.99551 * 179.97438 * 14 13 12 24 24 H 1.08007 * 122.30183 * 179.97438 * 16 13 12 25 25 H 1.08000 * 119.80223 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 2.3741 2.1126 -1.3938 5 1 1.5005 2.6169 0.8114 6 1 3.5912 1.4099 0.5824 7 6 2.0078 -1.2135 -0.0005 8 1 1.5086 -2.1255 0.2920 9 6 3.3633 -1.2440 -0.3825 10 6 4.2289 -2.2040 0.1652 11 6 5.5677 -2.2293 -0.2095 12 16 6.8681 -3.3035 0.2949 13 6 8.0191 -2.4814 -0.7436 14 6 9.3884 -2.8276 -0.8658 15 8 9.8401 -3.7533 -0.2232 16 6 7.4143 -1.4682 -1.4136 17 6 6.0552 -1.2998 -1.1448 18 6 5.1594 -0.3332 -1.6883 19 9 5.6153 0.5687 -2.5850 20 6 3.8587 -0.3076 -1.3175 21 1 -0.4850 0.8400 0.0004 22 1 3.8556 -2.9207 0.8816 23 1 10.0295 -2.2678 -1.5306 24 1 7.9483 -0.8349 -2.1068 25 1 3.1947 0.4322 -1.7395 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396294498.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:37 Heat of formation + Delta-G solvation = -66.166964 kcal Electronic energy + Delta-G solvation = -15017.923458 eV Core-core repulsion = 12194.251949 eV Total energy + Delta-G solvation = -2823.671509 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.94146 -40.30361 -39.68689 -36.98553 -35.14261 -31.69160 -31.43731 -28.19491 -24.87879 -24.56469 -22.26032 -21.61079 -20.06769 -18.45890 -17.71316 -17.50131 -17.09504 -16.65979 -16.50135 -15.99915 -15.49584 -15.36348 -15.09010 -14.56568 -14.10025 -13.92643 -13.81959 -13.28509 -12.90035 -12.56409 -12.35122 -11.95398 -11.76500 -11.60050 -11.11739 -10.83688 -10.44072 -9.52779 -9.23215 -8.68226 -6.71861 -0.72354 0.40844 0.67331 0.76388 1.19375 1.20956 1.34527 1.41191 1.93774 2.00446 2.34525 3.07504 3.33566 3.59659 3.93967 4.17184 4.31838 4.44237 4.64566 4.69443 4.77759 4.95276 5.16796 5.24105 5.49446 5.52686 5.79019 5.96435 6.32203 6.40995 6.58052 7.80507 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.037673 B = 0.006982 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.053275 B = 4009.319284 C = 4542.156658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.055 3.945 3 Si 0.952 3.048 4 H -0.249 1.249 5 H -0.262 1.262 6 H -0.253 1.253 7 C -0.417 4.417 8 H 0.085 0.915 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.045 4.045 12 S 0.071 5.929 13 C -0.361 4.361 14 C 0.417 3.583 15 O -0.527 6.527 16 C 0.030 3.970 17 C -0.269 4.269 18 C 0.185 3.815 19 F -0.139 7.139 20 C -0.259 4.259 21 H 0.309 0.691 22 H 0.116 0.884 23 H 0.159 0.841 24 H 0.177 0.823 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.689 3.545 -3.121 9.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.168 4.168 3 Si 0.774 3.226 4 H -0.174 1.174 5 H -0.187 1.187 6 H -0.176 1.176 7 C -0.444 4.444 8 H 0.103 0.897 9 C 0.111 3.889 10 C -0.258 4.258 11 C -0.162 4.162 12 S 0.335 5.665 13 C -0.476 4.476 14 C 0.283 3.717 15 O -0.408 6.408 16 C -0.001 4.001 17 C -0.275 4.275 18 C 0.163 3.837 19 F -0.118 7.118 20 C -0.279 4.279 21 H 0.121 0.879 22 H 0.134 0.866 23 H 0.175 0.825 24 H 0.194 0.806 25 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.881 1.952 -1.859 8.330 hybrid contribution -0.614 1.764 -0.973 2.107 sum 7.267 3.717 -2.832 8.640 Atomic orbital electron populations 1.69591 1.09207 1.33254 1.29207 1.26956 0.95408 1.04300 0.90156 0.85664 0.80054 0.76434 0.80476 1.17433 1.18697 1.17650 1.19777 0.93200 0.96636 1.34825 0.89668 1.17366 0.92546 0.90203 0.88807 1.20393 0.90311 1.07023 1.08040 1.22700 0.98021 0.97549 0.97908 1.84057 0.98611 1.35188 1.48669 1.23910 1.01959 1.08739 1.13011 1.22469 0.86314 0.82230 0.80725 1.90539 1.77625 1.29398 1.43196 1.20705 0.91397 0.93548 0.94407 1.17872 0.95369 1.04374 1.09845 1.17177 0.91561 0.86902 0.88046 1.91426 1.89703 1.65300 1.65337 1.20806 0.94736 1.06644 1.05724 0.87879 0.86565 0.82488 0.80563 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.00 13.92 21.86 0.30 -35.70 15 2 C 0.06 2.47 5.40 85.32 0.46 2.93 15 3 Si 0.95 35.88 24.51 68.60 1.68 37.56 15 4 H -0.25 -8.89 6.70 99.48 0.67 -8.22 15 5 H -0.26 -9.08 7.11 99.48 0.71 -8.38 15 6 H -0.25 -10.07 6.86 99.48 0.68 -9.39 15 7 C -0.42 -19.85 9.55 23.37 0.22 -19.63 15 8 H 0.09 4.28 8.06 -2.91 -0.02 4.26 15 9 C 0.12 5.35 5.10 -21.36 -0.11 5.25 15 10 C -0.23 -10.06 9.81 22.99 0.23 -9.83 15 11 C -0.05 -1.87 6.46 23.04 0.15 -1.72 15 12 S 0.07 2.65 22.93 -56.49 -1.30 1.35 15 13 C -0.36 -11.60 6.18 22.55 0.14 -11.46 15 14 C 0.42 11.38 11.36 68.69 0.78 12.16 15 15 O -0.53 -18.64 17.61 -3.41 -0.06 -18.70 15 16 C 0.03 0.94 9.96 22.00 0.22 1.16 15 17 C -0.27 -10.41 5.87 -21.31 -0.13 -10.54 15 18 C 0.18 7.34 7.31 22.66 0.17 7.50 15 19 F -0.14 -4.96 17.15 44.97 0.77 -4.19 15 20 C -0.26 -11.06 7.01 22.34 0.16 -10.90 15 21 H 0.31 12.34 8.29 -92.71 -0.77 11.57 15 22 H 0.12 4.90 8.06 -2.91 -0.02 4.88 15 23 H 0.16 2.49 8.06 -2.91 -0.02 2.46 15 24 H 0.18 3.97 8.06 -2.91 -0.02 3.94 15 25 H 0.13 5.20 4.71 -2.91 -0.01 5.19 15 Total: -1.00 -53.29 246.03 4.87 -48.42 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 1.18 Total: 6.32 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 2.29 Total: -35.08 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.30 Total: -35.70 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.06 Total: -18.70 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.77 Total: -4.19 kcal Atomic # 14 Polarization: 35.88 SS G_CDS: 1.68 Total: 37.56 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.30 Total: 1.35 kcal Total: -53.29 4.87 -48.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396294498.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.742 kcal (2) G-P(sol) polarization free energy of solvation -53.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds