Wall clock time and date at job start Mon Mar 30 2020 06:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86810 * 119.99787 * 2 1 4 4 H 1.48503 * 109.47068 * 270.00026 * 3 2 1 5 5 H 1.48499 * 109.46995 * 30.00007 * 3 2 1 6 6 H 1.48498 * 109.47125 * 149.99992 * 3 2 1 7 7 C 1.40126 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99808 * 163.31240 * 7 2 1 9 9 C 1.40742 * 119.99707 * 343.30614 * 7 2 1 10 10 C 1.41426 * 120.20433 * 334.30157 * 9 7 2 11 11 C 1.34911 * 120.45115 * 179.72294 * 10 9 7 12 12 C 1.42494 * 120.96512 * 0.29434 * 11 10 9 13 13 C 1.39635 * 128.28647 * 179.97438 * 12 11 10 14 14 C 1.35686 * 115.38298 * 180.02562 * 13 12 11 15 15 C 1.41819 * 124.77224 * 179.97438 * 14 13 12 16 16 O 1.21392 * 119.99845 * 180.02562 * 15 14 13 17 17 S 1.75462 * 110.44885 * 359.97438 * 14 13 12 18 18 C 1.40401 * 118.99033 * 359.97438 * 12 11 10 19 19 C 1.39428 * 120.04468 * 359.97098 * 18 12 11 20 20 F 1.35096 * 120.02590 * 180.02562 * 19 18 12 21 21 H 0.96995 * 119.99890 * 0.02562 * 1 2 3 22 22 H 1.08007 * 119.77911 * 359.97438 * 10 9 7 23 23 H 1.07994 * 119.52011 * 180.27657 * 11 10 9 24 24 H 1.07993 * 122.30914 * 0.02562 * 13 12 11 25 25 H 1.07998 * 119.99861 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5390 1.4403 0.7000 7 6 2.0081 -1.2135 0.0005 8 1 3.0540 -1.2332 -0.2680 9 6 1.3489 -2.4065 0.3512 10 6 0.2138 -2.3709 1.1940 11 6 -0.4252 -3.5109 1.5289 12 6 0.0285 -4.7737 1.0494 13 6 -0.5105 -6.0377 1.2972 14 6 0.1362 -7.0724 0.7036 15 6 -0.2393 -8.4350 0.8208 16 8 0.4036 -9.2928 0.2512 17 16 1.5022 -6.4873 -0.2292 18 6 1.1580 -4.8195 0.2166 19 6 1.8178 -3.6412 -0.1303 20 9 2.9042 -3.6857 -0.9320 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1464 -1.4242 1.5690 23 1 -1.2932 -3.4658 2.1698 24 1 -1.3821 -6.1819 1.9184 25 1 -1.0966 -8.7095 1.4175 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396294934.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:37 Heat of formation + Delta-G solvation = -68.535145 kcal Electronic energy + Delta-G solvation = -14972.742478 eV Core-core repulsion = 12148.968277 eV Total energy + Delta-G solvation = -2823.774201 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.27534 -40.20211 -39.55900 -36.95066 -34.77744 -31.43928 -31.08637 -28.10557 -25.08071 -24.06196 -22.19927 -21.38619 -19.79891 -18.34826 -17.77638 -17.31963 -16.87433 -16.22190 -16.12321 -15.79380 -15.30114 -15.30063 -14.79393 -14.25570 -13.96277 -13.80194 -13.47320 -13.04909 -12.89764 -12.39752 -12.23781 -11.86212 -11.74519 -11.48301 -11.10903 -10.78599 -10.29738 -9.42938 -9.06490 -8.55104 -6.60576 -0.57936 0.68162 0.70670 0.93300 1.28409 1.36270 1.45685 1.53046 2.06654 2.10904 2.52122 3.28987 3.72851 3.81966 4.22366 4.38841 4.49714 4.69357 4.82348 4.86116 4.91977 5.09642 5.25897 5.58223 5.71447 5.78923 5.89306 6.23968 6.40838 6.57910 6.64223 7.92313 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.049594 B = 0.006104 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.453326 B = 4586.175695 C = 5074.816448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.040 3.960 3 Si 0.993 3.007 4 H -0.261 1.261 5 H -0.250 1.250 6 H -0.258 1.258 7 C -0.434 4.434 8 H 0.085 0.915 9 C 0.089 3.911 10 C -0.146 4.146 11 C -0.051 4.051 12 C -0.220 4.220 13 C 0.033 3.967 14 C -0.370 4.370 15 C 0.417 3.583 16 O -0.535 6.535 17 S 0.039 5.961 18 C -0.097 4.097 19 C -0.085 4.085 20 F -0.169 7.169 21 H 0.309 0.691 22 H 0.135 0.865 23 H 0.151 0.849 24 H 0.193 0.807 25 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 0.214 5.234 7.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.182 4.182 3 Si 0.812 3.188 4 H -0.185 1.185 5 H -0.173 1.173 6 H -0.182 1.182 7 C -0.461 4.461 8 H 0.103 0.897 9 C 0.082 3.918 10 C -0.165 4.165 11 C -0.071 4.071 12 C -0.225 4.225 13 C 0.003 3.997 14 C -0.485 4.485 15 C 0.283 3.717 16 O -0.416 6.416 17 S 0.302 5.698 18 C -0.214 4.214 19 C -0.113 4.113 20 F -0.149 7.149 21 H 0.121 0.879 22 H 0.153 0.847 23 H 0.168 0.832 24 H 0.210 0.790 25 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.667 -0.915 4.047 5.538 hybrid contribution -0.111 1.446 0.208 1.465 sum -3.779 0.530 4.255 5.715 Atomic orbital electron populations 1.69709 1.09035 1.32892 1.27886 1.26972 0.95754 1.04789 0.90721 0.85009 0.79231 0.74554 0.80045 1.18547 1.17306 1.18173 1.20091 0.98426 0.91963 1.35623 0.89728 1.17938 0.92904 0.90606 0.90308 1.20896 0.97293 0.98806 0.99528 1.20862 0.98819 0.89533 0.97899 1.18071 0.99768 0.95657 1.08966 1.20912 0.97275 0.88356 0.93201 1.23974 1.06852 1.01413 1.16287 1.22541 0.86926 0.83906 0.78308 1.90528 1.54508 1.53333 1.43240 1.84130 1.33485 0.96538 1.55605 1.22982 1.00446 0.95695 1.02262 1.17200 0.93803 0.93371 1.06954 1.91227 1.53555 1.97257 1.72833 0.87946 0.84708 0.83177 0.79024 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -33.07 10.95 21.86 0.24 -32.83 15 2 C 0.04 1.71 5.15 85.31 0.44 2.15 15 3 Si 0.99 31.96 29.59 68.60 2.03 33.99 15 4 H -0.26 -8.32 7.11 99.48 0.71 -7.61 15 5 H -0.25 -7.23 7.11 99.48 0.71 -6.52 15 6 H -0.26 -8.42 7.11 99.48 0.71 -7.71 15 7 C -0.43 -21.25 8.75 23.34 0.20 -21.05 15 8 H 0.08 4.17 7.72 -2.91 -0.02 4.14 15 9 C 0.09 4.49 5.56 -21.31 -0.12 4.37 15 10 C -0.15 -6.48 8.56 22.29 0.19 -6.29 15 11 C -0.05 -1.94 9.99 22.57 0.23 -1.71 15 12 C -0.22 -8.81 5.87 -21.35 -0.13 -8.93 15 13 C 0.03 1.05 10.06 22.02 0.22 1.27 15 14 C -0.37 -12.90 6.19 22.56 0.14 -12.76 15 15 C 0.42 12.24 11.36 68.71 0.78 13.02 15 16 O -0.54 -20.44 17.61 -3.38 -0.06 -20.49 15 17 S 0.04 1.69 22.93 -56.49 -1.30 0.40 15 18 C -0.10 -4.58 6.44 23.08 0.15 -4.43 15 19 C -0.08 -4.40 7.34 23.13 0.17 -4.23 15 20 F -0.17 -9.05 16.69 44.97 0.75 -8.30 15 21 H 0.31 11.38 8.29 -92.71 -0.77 10.61 15 22 H 0.14 5.83 6.18 -2.91 -0.02 5.81 15 23 H 0.15 4.34 8.06 -2.91 -0.02 4.32 15 24 H 0.19 3.76 8.06 -2.91 -0.02 3.74 15 25 H 0.16 2.70 8.06 -2.91 -0.02 2.68 15 Total: -1.00 -61.55 250.72 5.18 -56.37 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.24 Total: 9.44 kcal Atomic # 6 Polarization: -40.86 SS G_CDS: 2.28 Total: -38.58 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.24 Total: -32.83 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.06 Total: -20.49 kcal Atomic # 9 Polarization: -9.05 SS G_CDS: 0.75 Total: -8.30 kcal Atomic # 14 Polarization: 31.96 SS G_CDS: 2.03 Total: 33.99 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -1.30 Total: 0.40 kcal Total: -61.55 5.18 -56.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396294934.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.164 kcal (2) G-P(sol) polarization free energy of solvation -61.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds