Wall clock time and date at job start Mon Mar 30 2020 06:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86805 * 120.00059 * 2 1 4 4 H 1.48503 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47020 * 299.99665 * 3 2 1 6 6 H 1.48496 * 109.47038 * 59.99739 * 3 2 1 7 7 C 1.39928 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00452 * 199.88780 * 7 2 1 9 9 C 1.40833 * 119.99886 * 19.88482 * 7 2 1 10 10 C 1.42236 * 120.12765 * 216.76751 * 9 7 2 11 11 S 1.75984 * 130.50737 * 359.97251 * 10 9 7 12 12 C 1.75493 * 91.60533 * 180.02562 * 11 10 9 13 13 C 1.41718 * 124.72883 * 180.02562 * 12 11 10 14 14 O 1.21393 * 119.99526 * 359.97438 * 13 12 11 15 15 C 1.34273 * 110.54707 * 0.02562 * 12 11 10 16 16 C 1.39802 * 119.79778 * 179.97438 * 10 9 7 17 17 C 1.41965 * 118.77406 * 359.96006 * 16 10 9 18 18 C 1.37346 * 120.99634 * 359.97438 * 17 16 10 19 19 C 1.38424 * 120.85646 * 0.27853 * 18 17 16 20 20 F 1.35099 * 120.08305 * 179.74828 * 19 18 17 21 21 H 0.97003 * 120.00050 * 0.02562 * 1 2 3 22 22 H 1.07993 * 120.00298 * 179.97438 * 13 12 11 23 23 H 1.07999 * 122.24331 * 180.02562 * 15 12 11 24 24 H 1.07991 * 119.50094 * 179.97438 * 17 16 10 25 25 H 1.08000 * 119.56867 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.7029 1.3464 -0.0006 5 1 1.8842 2.3964 -1.2126 6 1 1.8841 2.3965 1.2124 7 6 2.0085 -1.2118 0.0005 8 1 3.0402 -1.2396 0.3187 9 6 1.3673 -2.3953 -0.4138 10 6 1.6534 -3.6275 0.2365 11 16 2.7443 -3.9906 1.5689 12 6 2.3104 -5.6905 1.5259 13 6 2.8408 -6.6812 2.3894 14 8 3.6573 -6.3758 3.2342 15 6 1.4059 -5.9217 0.5608 16 6 1.0125 -4.7980 -0.1800 17 6 0.0836 -4.7245 -1.2510 18 6 -0.1870 -3.5296 -1.8718 19 6 0.4439 -2.3636 -1.4733 20 9 0.1697 -1.1977 -2.0983 21 1 -0.4850 0.8401 -0.0004 22 1 2.5186 -7.7077 2.2958 23 1 1.0069 -6.9068 0.3691 24 1 -0.4179 -5.6216 -1.5825 25 1 -0.8976 -3.5001 -2.6845 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396295370.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:34 Heat of formation + Delta-G solvation = -58.984078 kcal Electronic energy + Delta-G solvation = -15209.670781 eV Core-core repulsion = 12386.310745 eV Total energy + Delta-G solvation = -2823.360036 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.01948 -40.29685 -39.57635 -36.40019 -35.07506 -32.07979 -30.42186 -27.42590 -25.60511 -23.95006 -22.30952 -21.38311 -19.41374 -18.45675 -17.61232 -17.20600 -16.93416 -16.32381 -15.82124 -15.61679 -15.42653 -15.40769 -14.57171 -14.14307 -13.95265 -13.59533 -13.38200 -13.26263 -12.83601 -12.67091 -12.23076 -11.92678 -11.52072 -11.25232 -11.05109 -10.87372 -10.20166 -9.13004 -8.88611 -8.54116 -6.50308 -0.62050 0.63110 0.76817 1.02147 1.31186 1.35723 1.39602 1.46090 2.04799 2.14101 2.63313 3.24481 3.58654 4.03753 4.17046 4.33637 4.52823 4.55895 4.72030 4.85355 5.07497 5.13902 5.43144 5.53067 5.58112 5.72603 6.01782 6.30918 6.50940 6.64709 6.72111 8.19494 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026162 B = 0.008523 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.011847 B = 3284.271299 C = 4225.984006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.041 3.959 3 Si 0.974 3.026 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.498 4.498 8 H 0.076 0.924 9 C 0.077 3.923 10 C -0.185 4.185 11 S 0.076 5.924 12 C -0.310 4.310 13 C 0.419 3.581 14 O -0.517 6.517 15 C -0.010 4.010 16 C -0.099 4.099 17 C -0.147 4.147 18 C -0.124 4.124 19 C 0.001 3.999 20 F -0.152 7.152 21 H 0.292 0.708 22 H 0.177 0.823 23 H 0.201 0.799 24 H 0.160 0.840 25 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 -9.497 -1.191 9.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.176 4.176 3 Si 0.795 3.205 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.186 1.186 7 C -0.526 4.526 8 H 0.094 0.906 9 C 0.071 3.929 10 C -0.302 4.302 11 S 0.344 5.656 12 C -0.427 4.427 13 C 0.281 3.719 14 O -0.395 6.395 15 C -0.044 4.044 16 C -0.107 4.107 17 C -0.169 4.169 18 C -0.144 4.144 19 C -0.024 4.024 20 F -0.131 7.131 21 H 0.102 0.898 22 H 0.193 0.807 23 H 0.218 0.782 24 H 0.178 0.822 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.713 -8.324 0.230 8.358 hybrid contribution -0.848 0.888 -1.068 1.628 sum -0.134 -7.435 -0.838 7.484 Atomic orbital electron populations 1.69803 1.09045 1.31202 1.32924 1.26572 0.95371 1.04232 0.91471 0.85258 0.79556 0.76548 0.79175 1.18179 1.18775 1.18596 1.19472 0.99042 0.92613 1.41487 0.90589 1.17158 0.93205 0.91718 0.90826 1.23302 1.06229 0.98055 1.02600 1.84209 1.44695 1.02635 1.34098 1.24279 1.10554 0.99035 1.08829 1.22840 0.77082 0.94451 0.77488 1.90565 1.29768 1.85889 1.33237 1.20829 0.92717 1.00247 0.90560 1.18574 1.00434 0.91864 0.99792 1.20672 1.01085 0.97601 0.97507 1.20811 1.00371 0.91622 1.01600 1.17923 1.06102 0.81467 0.96944 1.91278 1.92845 1.48240 1.80739 0.89765 0.80726 0.78240 0.82249 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.24 11.13 21.83 0.24 -42.99 15 2 C 0.04 2.15 4.49 85.24 0.38 2.53 15 3 Si 0.97 39.89 29.60 68.60 2.03 41.92 15 4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 15 5 H -0.26 -10.42 7.11 99.48 0.71 -9.71 15 6 H -0.26 -10.12 7.11 99.48 0.71 -9.42 15 7 C -0.50 -27.22 8.65 23.31 0.20 -27.01 15 8 H 0.08 4.13 7.92 -2.91 -0.02 4.11 15 9 C 0.08 4.10 5.42 -21.08 -0.11 3.98 15 10 C -0.19 -8.70 6.38 23.64 0.15 -8.55 15 11 S 0.08 3.23 22.65 -56.49 -1.28 1.95 15 12 C -0.31 -9.88 6.14 22.22 0.14 -9.75 15 13 C 0.42 10.71 11.35 68.68 0.78 11.49 15 14 O -0.52 -17.98 17.60 -3.38 -0.06 -18.04 15 15 C -0.01 -0.27 10.01 21.85 0.22 -0.05 15 16 C -0.10 -3.79 5.86 -21.50 -0.13 -3.91 15 17 C -0.15 -5.17 10.07 22.98 0.23 -4.94 15 18 C -0.12 -5.10 9.94 22.10 0.22 -4.88 15 19 C 0.00 0.04 6.68 22.89 0.15 0.19 15 20 F -0.15 -8.17 14.25 44.97 0.64 -7.53 15 21 H 0.29 14.22 8.30 -92.71 -0.77 13.45 15 22 H 0.18 2.12 8.06 -2.91 -0.02 2.10 15 23 H 0.20 3.17 8.06 -2.91 -0.02 3.15 15 24 H 0.16 3.99 8.06 -2.92 -0.02 3.97 15 25 H 0.14 4.76 8.06 -2.91 -0.02 4.74 15 Total: -1.00 -67.96 249.98 5.04 -62.92 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: 1.23 Total: 2.67 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 2.23 Total: -40.89 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.24 Total: -42.99 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.06 Total: -18.04 kcal Atomic # 9 Polarization: -8.17 SS G_CDS: 0.64 Total: -7.53 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -1.28 Total: 1.95 kcal Total: -67.96 5.04 -62.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396295370.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.932 kcal (2) G-P(sol) polarization free energy of solvation -67.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds