Wall clock time and date at job start Mon Mar 30 2020 06:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30563 * 1 3 3 Si 1.86799 * 120.00043 * 2 1 4 4 H 1.48499 * 109.47016 * 239.99532 * 3 2 1 5 5 H 1.48505 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47263 * 119.99518 * 3 2 1 7 7 C 1.40399 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00307 * 164.07786 * 7 2 1 9 9 C 1.40514 * 119.99957 * 344.08185 * 7 2 1 10 10 C 1.40954 * 120.45025 * 333.64046 * 9 7 2 11 11 C 1.35987 * 120.24092 * 179.97438 * 10 9 7 12 12 F 1.35105 * 119.02703 * 179.97438 * 11 10 9 13 13 C 1.40495 * 121.94258 * 0.02562 * 11 10 9 14 14 S 1.76242 * 130.02447 * 179.97438 * 13 11 10 15 15 C 1.75446 * 91.58491 * 180.02562 * 14 13 11 16 16 C 1.32237 * 110.83388 * 0.02562 * 15 14 13 17 17 C 1.40034 * 120.82190 * 359.97438 * 13 11 10 18 18 C 1.42721 * 118.76490 * 359.74303 * 17 13 11 19 19 C 1.41460 * 120.43870 * 180.24821 * 18 17 13 20 20 O 1.21455 * 119.99740 * 0.28071 * 19 18 17 21 21 H 0.97001 * 120.00018 * 0.02562 * 1 2 3 22 22 H 1.07999 * 119.87764 * 359.97438 * 10 9 7 23 23 H 1.08007 * 124.58449 * 179.97438 * 15 14 13 24 24 H 1.08003 * 122.08215 * 180.02562 * 16 15 14 25 25 H 1.07999 * 120.00447 * 180.27249 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2396 1.6177 0.0000 4 1 3.0935 1.6963 -1.2124 5 1 1.2746 2.7465 -0.0006 6 1 3.0933 1.6965 1.2126 7 6 2.0076 -1.2159 0.0005 8 1 3.0566 -1.2340 -0.2560 9 6 1.3455 -2.4093 0.3348 10 6 0.2122 -2.3869 1.1726 11 6 -0.4257 -3.5444 1.4930 12 9 -1.5093 -3.4945 2.2984 13 6 0.0095 -4.7906 1.0120 14 16 -0.6457 -6.4034 1.2872 15 6 0.5938 -7.1316 0.2814 16 6 1.4101 -6.2096 -0.2004 17 6 1.1285 -4.8859 0.1754 18 6 1.8191 -3.6905 -0.1866 19 6 2.9505 -3.7451 -1.0339 20 8 3.3371 -4.8137 -1.4626 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1509 -1.4470 1.5615 23 1 0.6790 -8.1899 0.0833 24 1 2.2408 -6.4588 -0.8442 25 1 3.4704 -2.8366 -1.2999 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396295874.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:19 Heat of formation + Delta-G solvation = -50.521997 kcal Electronic energy + Delta-G solvation = -15363.027759 eV Core-core repulsion = 12540.034666 eV Total energy + Delta-G solvation = -2822.993092 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.06422 -38.81162 -36.70708 -35.44605 -33.15205 -30.21156 -28.66793 -26.16969 -23.67964 -22.44343 -20.06460 -19.96988 -17.77137 -16.93259 -16.08997 -15.86874 -15.09326 -14.78259 -14.19165 -13.93764 -13.59453 -13.56381 -13.10140 -12.70468 -12.16627 -12.05610 -11.88090 -11.46123 -11.32844 -11.07001 -10.87233 -10.50484 -10.11833 -9.96042 -9.54261 -8.47107 -8.32774 -7.73883 -7.50534 -6.90347 -5.03741 1.26816 2.00929 2.39180 2.74143 2.77799 2.79564 2.80451 3.26630 3.47120 3.58953 4.15696 5.11969 5.22354 5.49800 5.74872 6.01690 6.21227 6.33235 6.41745 6.51072 6.74861 6.86580 7.01010 7.11191 7.33517 7.38256 7.62709 7.89105 8.07879 8.21990 8.88409 9.44157 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026463 B = 0.008576 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.811618 B = 3264.153555 C = 4243.340773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.069 3.931 3 Si 0.926 3.074 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.406 4.406 8 H 0.102 0.898 9 C 0.166 3.834 10 C -0.168 4.168 11 C 0.162 3.838 12 F -0.156 7.156 13 C -0.279 4.279 14 S 0.035 5.965 15 C -0.199 4.199 16 C -0.121 4.121 17 C 0.055 3.945 18 C -0.327 4.327 19 C 0.386 3.614 20 O -0.538 6.538 21 H 0.298 0.702 22 H 0.142 0.858 23 H 0.156 0.844 24 H 0.155 0.845 25 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.254 -0.151 1.451 1.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.156 4.156 3 Si 0.748 3.252 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.431 4.431 8 H 0.120 0.880 9 C 0.161 3.839 10 C -0.189 4.189 11 C 0.139 3.861 12 F -0.135 7.135 13 C -0.394 4.394 14 S 0.296 5.704 15 C -0.333 4.333 16 C -0.152 4.152 17 C 0.047 3.953 18 C -0.334 4.334 19 C 0.258 3.742 20 O -0.425 6.425 21 H 0.110 0.890 22 H 0.159 0.841 23 H 0.173 0.827 24 H 0.172 0.828 25 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.054 -1.142 2.076 2.593 hybrid contribution 0.968 1.400 -0.556 1.790 sum -0.086 0.258 1.520 1.544 Atomic orbital electron populations 1.69648 1.08292 1.31655 1.27338 1.26363 0.95017 1.02763 0.91505 0.86029 0.80173 0.78080 0.80967 1.17966 1.19595 1.17889 1.19943 0.98415 0.90291 1.34496 0.88033 1.18321 0.88556 0.91275 0.85729 1.21049 0.99540 0.95712 1.02642 1.16718 0.84935 0.92407 0.92045 1.91397 1.53168 1.97384 1.71543 1.22043 1.06695 0.94818 1.15863 1.83552 1.33995 0.98591 1.54277 1.25118 1.00539 1.02674 1.04960 1.20439 1.01415 0.91335 1.02055 1.17914 0.91663 0.93023 0.92676 1.20107 1.07261 0.91501 1.14481 1.21811 0.83169 0.91519 0.77713 1.90331 1.66382 1.34191 1.51554 0.88999 0.84072 0.82655 0.82763 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -16.06 10.96 55.57 0.61 -15.45 15 2 C 0.07 1.41 5.17 -17.28 -0.09 1.33 15 3 Si 0.93 15.08 29.59 -169.99 -5.03 10.05 15 4 H -0.26 -4.13 7.11 56.52 0.40 -3.73 15 5 H -0.27 -4.34 7.11 56.52 0.40 -3.94 15 6 H -0.25 -4.14 7.11 56.52 0.40 -3.74 15 7 C -0.41 -8.86 8.43 -37.91 -0.32 -9.18 15 8 H 0.10 2.03 6.65 -52.48 -0.35 1.68 15 9 C 0.17 3.93 5.71 -104.81 -0.60 3.33 15 10 C -0.17 -3.98 8.54 -39.36 -0.34 -4.31 15 11 C 0.16 3.80 7.23 -39.54 -0.29 3.52 15 12 F -0.16 -3.51 17.22 2.25 0.04 -3.47 15 13 C -0.28 -6.48 6.47 -38.06 -0.25 -6.72 15 14 S 0.03 0.68 23.29 -107.50 -2.50 -1.82 15 15 C -0.20 -3.69 11.08 28.81 0.32 -3.37 15 16 C -0.12 -2.58 9.33 -40.67 -0.38 -2.96 15 17 C 0.06 1.31 5.85 -106.65 -0.62 0.69 15 18 C -0.33 -7.79 5.98 -103.74 -0.62 -8.41 15 19 C 0.39 8.64 10.81 31.96 0.35 8.98 15 20 O -0.54 -12.83 14.91 5.41 0.08 -12.75 15 21 H 0.30 5.70 8.29 -40.82 -0.34 5.36 15 22 H 0.14 3.30 6.23 -52.49 -0.33 2.98 15 23 H 0.16 2.29 8.06 -52.48 -0.42 1.87 15 24 H 0.16 3.30 6.04 -52.48 -0.32 2.98 15 25 H 0.07 1.45 6.54 -52.49 -0.34 1.11 15 LS Contribution 243.71 15.07 3.67 3.67 Total: -1.00 -25.46 243.71 -6.86 -32.32 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -0.89 Total: 4.56 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -2.83 Total: -17.11 kcal Atomic # 7 Polarization: -16.06 SS G_CDS: 0.61 Total: -15.45 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.04 Total: -3.47 kcal Atomic # 14 Polarization: 15.08 SS G_CDS: -5.03 Total: 10.05 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.50 Total: -1.82 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -25.46 -6.86 -32.32 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396295874.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.201 kcal (2) G-P(sol) polarization free energy of solvation -25.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds