Wall clock time and date at job start Mon Mar 30 2020 06:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30563 * 1 3 3 Si 1.86799 * 120.00043 * 2 1 4 4 H 1.48499 * 109.47016 * 239.99532 * 3 2 1 5 5 H 1.48505 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47263 * 119.99518 * 3 2 1 7 7 C 1.40399 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00307 * 164.07786 * 7 2 1 9 9 C 1.40514 * 119.99957 * 344.08185 * 7 2 1 10 10 C 1.40954 * 120.45025 * 333.64046 * 9 7 2 11 11 C 1.35987 * 120.24092 * 179.97438 * 10 9 7 12 12 F 1.35105 * 119.02703 * 179.97438 * 11 10 9 13 13 C 1.40495 * 121.94258 * 0.02562 * 11 10 9 14 14 S 1.76242 * 130.02447 * 179.97438 * 13 11 10 15 15 C 1.75446 * 91.58491 * 180.02562 * 14 13 11 16 16 C 1.32237 * 110.83388 * 0.02562 * 15 14 13 17 17 C 1.40034 * 120.82190 * 359.97438 * 13 11 10 18 18 C 1.42721 * 118.76490 * 359.74303 * 17 13 11 19 19 C 1.41460 * 120.43870 * 180.24821 * 18 17 13 20 20 O 1.21455 * 119.99740 * 0.28071 * 19 18 17 21 21 H 0.97001 * 120.00018 * 0.02562 * 1 2 3 22 22 H 1.07999 * 119.87764 * 359.97438 * 10 9 7 23 23 H 1.08007 * 124.58449 * 179.97438 * 15 14 13 24 24 H 1.08003 * 122.08215 * 180.02562 * 16 15 14 25 25 H 1.07999 * 120.00447 * 180.27249 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2396 1.6177 0.0000 4 1 3.0935 1.6963 -1.2124 5 1 1.2746 2.7465 -0.0006 6 1 3.0933 1.6965 1.2126 7 6 2.0076 -1.2159 0.0005 8 1 3.0566 -1.2340 -0.2560 9 6 1.3455 -2.4093 0.3348 10 6 0.2122 -2.3869 1.1726 11 6 -0.4257 -3.5444 1.4930 12 9 -1.5093 -3.4945 2.2984 13 6 0.0095 -4.7906 1.0120 14 16 -0.6457 -6.4034 1.2872 15 6 0.5938 -7.1316 0.2814 16 6 1.4101 -6.2096 -0.2004 17 6 1.1285 -4.8859 0.1754 18 6 1.8191 -3.6905 -0.1866 19 6 2.9505 -3.7451 -1.0339 20 8 3.3371 -4.8137 -1.4626 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1509 -1.4470 1.5615 23 1 0.6790 -8.1899 0.0833 24 1 2.2408 -6.4588 -0.8442 25 1 3.4704 -2.8366 -1.2999 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396295874.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:19 Heat of formation + Delta-G solvation = -62.870584 kcal Electronic energy + Delta-G solvation = -15363.563234 eV Core-core repulsion = 12540.034666 eV Total energy + Delta-G solvation = -2823.528567 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.86346 -40.51278 -38.44498 -37.09862 -34.80592 -31.94148 -30.35378 -27.87413 -25.37644 -24.13661 -21.73304 -21.67181 -19.47731 -18.60641 -17.72392 -17.57933 -16.72122 -16.56637 -15.82801 -15.66536 -15.25352 -15.10211 -14.86043 -14.24042 -13.85805 -13.75167 -13.44356 -13.05568 -12.81438 -12.68979 -12.44866 -11.99178 -11.72209 -11.58189 -11.13609 -10.17558 -10.05541 -9.44504 -9.09988 -8.56846 -6.75394 -0.43166 0.32079 0.79981 1.16692 1.37304 1.42967 1.56868 1.66318 1.86034 2.11198 2.52938 3.37159 3.45652 4.00075 4.07297 4.33889 4.53362 4.63228 4.80598 4.88194 5.07241 5.20333 5.28141 5.41475 5.60674 5.66696 5.93355 6.18189 6.38301 6.49055 7.15900 7.88213 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026463 B = 0.008576 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.811618 B = 3264.153555 C = 4243.340773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.035 3.965 3 Si 0.999 3.001 4 H -0.248 1.248 5 H -0.265 1.265 6 H -0.252 1.252 7 C -0.410 4.410 8 H 0.118 0.882 9 C 0.143 3.857 10 C -0.182 4.182 11 C 0.151 3.849 12 F -0.155 7.155 13 C -0.317 4.317 14 S 0.072 5.928 15 C -0.167 4.167 16 C -0.154 4.154 17 C 0.042 3.958 18 C -0.360 4.360 19 C 0.385 3.615 20 O -0.559 6.559 21 H 0.309 0.691 22 H 0.137 0.863 23 H 0.201 0.799 24 H 0.151 0.849 25 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 0.221 1.353 1.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.189 4.189 3 Si 0.817 3.183 4 H -0.172 1.172 5 H -0.189 1.189 6 H -0.176 1.176 7 C -0.434 4.434 8 H 0.136 0.864 9 C 0.137 3.863 10 C -0.203 4.203 11 C 0.128 3.872 12 F -0.134 7.134 13 C -0.432 4.432 14 S 0.333 5.667 15 C -0.301 4.301 16 C -0.185 4.185 17 C 0.033 3.967 18 C -0.366 4.366 19 C 0.259 3.741 20 O -0.447 6.447 21 H 0.122 0.878 22 H 0.154 0.846 23 H 0.218 0.782 24 H 0.169 0.831 25 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.703 -0.778 1.984 2.244 hybrid contribution 0.759 1.297 -0.500 1.584 sum 0.056 0.519 1.484 1.573 Atomic orbital electron populations 1.69675 1.09870 1.33365 1.26500 1.27289 0.95573 1.05672 0.90327 0.84950 0.78788 0.73476 0.81118 1.17194 1.18884 1.17560 1.20394 0.99200 0.90537 1.33259 0.86423 1.18596 0.89019 0.92141 0.86518 1.21075 1.00161 0.95634 1.03410 1.16862 0.85072 0.92953 0.92265 1.91383 1.53058 1.97427 1.71510 1.22315 1.07616 0.96491 1.16809 1.83344 1.33513 0.96033 1.53809 1.25635 0.98226 1.04327 1.01948 1.20412 1.02902 0.91047 1.04105 1.18314 0.91717 0.94111 0.92533 1.20371 1.08432 0.91942 1.15816 1.22042 0.82880 0.92011 0.77201 1.90307 1.66928 1.35018 1.52452 0.87842 0.84567 0.78220 0.83149 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -32.86 10.96 21.90 0.24 -32.62 15 2 C 0.04 1.40 5.17 85.41 0.44 1.84 15 3 Si 1.00 29.15 29.59 68.60 2.03 31.18 15 4 H -0.25 -6.97 7.11 99.48 0.71 -6.27 15 5 H -0.26 -7.41 7.11 99.48 0.71 -6.70 15 6 H -0.25 -7.23 7.11 99.48 0.71 -6.52 15 7 C -0.41 -17.70 8.43 23.35 0.20 -17.50 15 8 H 0.12 4.56 6.65 -2.91 -0.02 4.54 15 9 C 0.14 6.86 5.71 -19.99 -0.11 6.74 15 10 C -0.18 -8.82 8.54 22.41 0.19 -8.63 15 11 C 0.15 7.26 7.23 22.30 0.16 7.42 15 12 F -0.15 -7.06 17.22 44.97 0.77 -6.29 15 13 C -0.32 -14.84 6.47 23.26 0.15 -14.69 15 14 S 0.07 2.70 23.29 -56.49 -1.32 1.38 15 15 C -0.17 -5.81 11.08 66.78 0.74 -5.07 15 16 C -0.15 -6.47 9.33 21.77 0.20 -6.27 15 17 C 0.04 2.01 5.85 -21.18 -0.12 1.88 15 18 C -0.36 -17.44 5.98 -19.29 -0.12 -17.56 15 19 C 0.38 17.36 10.81 68.61 0.74 18.10 15 20 O -0.56 -26.85 14.91 -3.57 -0.05 -26.91 15 21 H 0.31 11.55 8.29 -92.71 -0.77 10.79 15 22 H 0.14 6.56 6.23 -2.91 -0.02 6.54 15 23 H 0.20 5.04 8.06 -2.91 -0.02 5.01 15 24 H 0.15 6.42 6.04 -2.91 -0.02 6.40 15 25 H 0.10 3.83 6.54 -2.91 -0.02 3.81 15 Total: -1.00 -54.77 243.71 5.40 -49.37 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 1.25 Total: 17.60 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 2.47 Total: -33.72 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.24 Total: -32.62 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.91 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.77 Total: -6.29 kcal Atomic # 14 Polarization: 29.15 SS G_CDS: 2.03 Total: 31.18 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.32 Total: 1.38 kcal Total: -54.77 5.40 -49.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396295874.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.499 kcal (2) G-P(sol) polarization free energy of solvation -54.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds