Wall clock time and date at job start Mon Mar 30 2020 06:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48502 * 109.46838 * 239.99836 * 3 2 1 5 5 H 1.48501 * 109.47060 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47173 * 119.99667 * 3 2 1 7 7 C 1.40398 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00357 * 180.02562 * 7 2 1 9 9 C 1.39553 * 120.00064 * 359.97438 * 7 2 1 10 10 S 1.75454 * 124.84678 * 0.52706 * 9 7 2 11 11 C 1.76015 * 91.81557 * 179.97438 * 10 9 7 12 12 C 1.39125 * 130.02924 * 179.46415 * 11 10 9 13 13 C 1.39533 * 120.16917 * 180.02562 * 12 11 10 14 14 C 1.46754 * 120.09310 * 179.97438 * 13 12 11 15 15 O 1.21332 * 119.99672 * 0.02562 * 14 13 12 16 16 C 1.40642 * 119.82220 * 359.97438 * 13 12 11 17 17 C 1.35391 * 120.44196 * 0.02562 * 16 13 12 18 18 C 1.40526 * 110.04146 * 359.69939 * 11 10 9 19 19 C 1.37568 * 124.85340 * 179.97438 * 9 7 2 20 20 F 1.35101 * 122.52379 * 359.97438 * 19 9 7 21 21 H 0.97004 * 120.00231 * 0.02562 * 1 2 3 22 22 H 1.08002 * 119.91482 * 359.97438 * 12 11 10 23 23 H 1.07996 * 120.00640 * 180.02562 * 14 13 12 24 24 H 1.08004 * 119.77794 * 179.97438 * 16 13 12 25 25 H 1.08002 * 119.62126 * 179.97438 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6963 -1.2125 5 1 1.2754 2.7465 -0.0006 6 1 3.0941 1.6965 1.2125 7 6 2.0084 -1.2159 0.0005 8 1 3.0884 -1.2159 0.0010 9 6 1.3107 -2.4245 0.0016 10 16 -0.4375 -2.5728 -0.0108 11 6 -0.3444 -4.3305 -0.0017 12 6 -1.3608 -5.2804 0.0052 13 6 -1.0495 -6.6405 0.0124 14 6 -2.1230 -7.6411 0.0203 15 8 -3.2832 -7.2860 0.0200 16 6 0.2960 -7.0501 0.0122 17 6 1.2921 -6.1331 0.0055 18 6 0.9994 -4.7415 0.0035 19 6 1.8953 -3.6697 0.0017 20 9 3.2352 -3.8431 0.0003 21 1 -0.4851 0.8401 -0.0004 22 1 -2.3935 -4.9642 0.0058 23 1 -1.8805 -8.6934 0.0262 24 1 0.5362 -8.1030 0.0182 25 1 2.3207 -6.4624 0.0058 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396296327.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:32 Heat of formation + Delta-G solvation = -84.955197 kcal Electronic energy + Delta-G solvation = -14931.912567 eV Core-core repulsion = 12107.426339 eV Total energy + Delta-G solvation = -2824.486228 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.96806 -40.43168 -39.00338 -36.84541 -34.81041 -31.69354 -31.34804 -28.06568 -25.06144 -23.84020 -22.22181 -21.11725 -20.00450 -18.27189 -17.82918 -17.15339 -16.68762 -16.35232 -16.06775 -15.61273 -15.09253 -14.82326 -14.79415 -14.41327 -14.08671 -13.78753 -13.77128 -13.26536 -12.99284 -12.41064 -12.06537 -12.00870 -11.86012 -11.17775 -11.11569 -10.60865 -10.32893 -9.49577 -9.14182 -8.37916 -6.74897 -0.31951 0.62224 0.88386 1.14051 1.30204 1.49685 1.51765 1.64362 1.90430 2.05177 2.68410 3.10346 3.63688 3.98827 4.07138 4.29000 4.52002 4.65368 4.68063 4.88324 5.05324 5.11699 5.20282 5.50584 5.56734 5.71171 5.77229 6.14832 6.20280 6.30852 6.71310 7.70763 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.037871 B = 0.006719 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.179862 B = 4166.445244 C = 4895.749584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.018 3.982 3 Si 1.018 2.982 4 H -0.253 1.253 5 H -0.251 1.251 6 H -0.253 1.253 7 C -0.370 4.370 8 H 0.106 0.894 9 C -0.009 4.009 10 S 0.171 5.829 11 C -0.302 4.302 12 C 0.007 3.993 13 C -0.278 4.278 14 C 0.402 3.598 15 O -0.529 6.529 16 C -0.035 4.035 17 C -0.180 4.180 18 C 0.002 3.998 19 C -0.214 4.214 20 F -0.165 7.165 21 H 0.324 0.676 22 H 0.115 0.885 23 H 0.155 0.845 24 H 0.171 0.829 25 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 -2.405 0.012 2.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.205 4.205 3 Si 0.835 3.165 4 H -0.177 1.177 5 H -0.174 1.174 6 H -0.177 1.177 7 C -0.403 4.403 8 H 0.124 0.876 9 C -0.130 4.130 10 S 0.430 5.570 11 C -0.416 4.416 12 C -0.016 4.016 13 C -0.281 4.281 14 C 0.267 3.733 15 O -0.408 6.408 16 C -0.054 4.054 17 C -0.200 4.200 18 C -0.007 4.007 19 C -0.238 4.238 20 F -0.145 7.145 21 H 0.138 0.862 22 H 0.133 0.867 23 H 0.171 0.829 24 H 0.188 0.812 25 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.336 -1.097 -0.001 1.729 hybrid contribution 1.958 -0.223 0.015 1.970 sum 0.622 -1.320 0.014 1.459 Atomic orbital electron populations 1.68550 1.09286 1.33979 1.27753 1.27465 0.95976 1.06081 0.90981 0.84650 0.78568 0.72453 0.80867 1.17655 1.17374 1.17654 1.19811 0.96749 0.89398 1.34341 0.87580 1.21868 0.97784 0.95730 0.97590 1.84570 1.00778 0.92361 1.79278 1.23391 0.96089 1.02767 1.19307 1.20701 0.96623 0.92202 0.92060 1.20731 0.96517 0.93935 1.16933 1.24350 0.85631 0.95584 0.67766 1.90479 1.24668 1.86068 1.39599 1.20885 0.90111 1.00417 0.94026 1.20678 1.00098 0.90295 1.08929 1.18246 0.91944 0.94458 0.96014 1.16468 0.77080 0.92370 1.37844 1.91152 1.30318 1.96050 1.96971 0.86179 0.86729 0.82885 0.81192 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -33.34 10.58 21.91 0.23 -33.11 15 2 C 0.02 0.75 5.50 85.40 0.47 1.21 15 3 Si 1.02 31.11 29.56 68.60 2.03 33.14 15 4 H -0.25 -7.61 7.11 99.48 0.71 -6.90 15 5 H -0.25 -6.89 7.11 99.48 0.71 -6.19 15 6 H -0.25 -7.61 7.11 99.48 0.71 -6.90 15 7 C -0.37 -18.12 9.14 23.11 0.21 -17.91 15 8 H 0.11 5.04 7.80 -2.91 -0.02 5.02 15 9 C -0.01 -0.47 6.12 22.43 0.14 -0.33 15 10 S 0.17 8.33 20.12 -56.49 -1.14 7.20 15 11 C -0.30 -14.46 6.45 23.04 0.15 -14.31 15 12 C 0.01 0.28 9.62 22.80 0.22 0.50 15 13 C -0.28 -9.78 5.87 -20.15 -0.12 -9.89 15 14 C 0.40 11.49 11.44 70.05 0.80 12.29 15 15 O -0.53 -19.47 17.14 -3.19 -0.05 -19.52 15 16 C -0.03 -1.11 9.69 22.20 0.22 -0.90 15 17 C -0.18 -7.30 9.98 22.60 0.23 -7.07 15 18 C 0.00 0.08 5.86 -21.38 -0.13 -0.04 15 19 C -0.21 -11.42 7.45 22.46 0.17 -11.25 15 20 F -0.17 -8.74 17.07 44.97 0.77 -7.98 15 21 H 0.32 12.03 8.29 -92.71 -0.77 11.26 15 22 H 0.11 4.80 7.62 -2.91 -0.02 4.78 15 23 H 0.16 2.53 8.06 -2.91 -0.02 2.51 15 24 H 0.17 3.55 8.06 -2.91 -0.02 3.52 15 25 H 0.12 4.51 8.06 -2.91 -0.02 4.49 15 Total: -1.00 -61.82 250.79 5.42 -56.40 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.24 Total: 11.58 kcal Atomic # 6 Polarization: -50.06 SS G_CDS: 2.35 Total: -47.71 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.23 Total: -33.11 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.52 kcal Atomic # 9 Polarization: -8.74 SS G_CDS: 0.77 Total: -7.98 kcal Atomic # 14 Polarization: 31.11 SS G_CDS: 2.03 Total: 33.14 kcal Atomic # 16 Polarization: 8.33 SS G_CDS: -1.14 Total: 7.20 kcal Total: -61.82 5.42 -56.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396296327.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.557 kcal (2) G-P(sol) polarization free energy of solvation -61.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds