Wall clock time and date at job start Mon Mar 30 2020 06:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30913 * 1 3 3 Si 1.86804 * 119.99855 * 2 1 4 4 H 1.48500 * 109.46893 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46943 * 299.99464 * 3 2 1 6 6 H 1.48496 * 109.47318 * 59.99616 * 3 2 1 7 7 C 1.39831 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99559 * 198.16421 * 7 2 1 9 9 C 1.41105 * 119.99754 * 18.16209 * 7 2 1 10 10 C 1.40415 * 119.77492 * 205.19752 * 9 7 2 11 11 C 1.38521 * 121.11432 * 180.23433 * 10 9 7 12 12 S 1.76101 * 130.38264 * 180.27656 * 11 10 9 13 13 C 1.75484 * 91.53268 * 179.57664 * 12 11 10 14 14 F 1.35101 * 124.65520 * 179.79215 * 13 12 11 15 15 C 1.33349 * 110.69506 * 359.83275 * 13 12 11 16 16 C 1.39629 * 115.83691 * 359.97438 * 15 13 12 17 17 C 1.47699 * 128.90385 * 180.02562 * 16 15 13 18 18 C 1.46650 * 120.16555 * 0.02890 * 17 16 15 19 19 O 1.21325 * 119.99957 * 179.97438 * 18 17 16 20 20 C 1.38436 * 119.66822 * 180.02562 * 17 16 15 21 21 H 0.97007 * 119.99841 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.44536 * 359.96023 * 10 9 7 23 23 H 1.07992 * 122.08781 * 179.97438 * 15 13 12 24 24 H 1.07992 * 120.00205 * 359.97438 * 18 17 16 25 25 H 1.07998 * 120.00736 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7031 1.3464 0.0006 5 1 1.8844 2.3964 -1.2126 6 1 1.8843 2.3965 1.2124 7 6 2.0083 -1.2110 0.0005 8 1 3.0479 -1.2341 0.2921 9 6 1.3554 -2.4027 -0.3798 10 6 1.8240 -3.6373 0.0974 11 6 1.2072 -4.8244 -0.2621 12 16 1.5786 -6.4855 0.1895 13 6 0.2406 -7.0949 -0.7685 14 9 -0.0856 -8.4003 -0.8897 15 6 -0.4095 -6.0928 -1.3611 16 6 0.0863 -4.8121 -1.1087 17 6 -0.4049 -3.5121 -1.6088 18 6 -1.5692 -3.4571 -2.4988 19 8 -1.9704 -2.3875 -2.9074 20 6 0.2392 -2.3457 -1.2332 21 1 -0.4850 0.8401 -0.0004 22 1 2.6824 -3.6622 0.7522 23 1 -1.2662 -6.2611 -1.9968 24 1 -2.0695 -4.3686 -2.7904 25 1 -0.1150 -1.3922 -1.5959 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396296972.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:25 Heat of formation + Delta-G solvation = -46.551871 kcal Electronic energy + Delta-G solvation = -14993.889664 eV Core-core repulsion = 12171.068729 eV Total energy + Delta-G solvation = -2822.820935 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.28214 -38.88402 -37.45281 -35.29723 -32.91022 -30.34456 -28.79724 -25.51579 -23.84655 -22.72824 -20.21958 -20.01345 -18.08441 -17.04515 -15.98366 -15.63106 -15.35145 -15.16376 -14.84261 -14.17140 -13.92100 -13.54198 -13.14009 -13.07945 -12.31598 -12.27914 -11.86200 -11.45056 -11.26529 -10.97420 -10.49028 -10.41193 -10.08286 -9.98611 -9.37643 -9.01344 -8.78017 -7.55933 -7.36657 -7.05683 -4.74333 1.11180 1.94310 2.03398 2.57718 2.69432 2.85491 2.91546 3.02886 3.33574 3.59252 4.20667 4.96324 5.01574 5.13053 5.71618 5.97189 6.11043 6.33550 6.44540 6.49050 6.64766 6.80308 6.81844 7.24725 7.31058 7.43613 7.61488 7.99683 8.09793 8.28172 8.33639 9.62684 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.029197 B = 0.007061 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.776758 B = 3964.430891 C = 4838.142885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.066 3.934 3 Si 0.921 3.079 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.416 4.416 8 H 0.094 0.906 9 C 0.111 3.889 10 C -0.208 4.208 11 C -0.057 4.057 12 S 0.039 5.961 13 C -0.080 4.080 14 F -0.122 7.122 15 C -0.098 4.098 16 C -0.172 4.172 17 C -0.151 4.151 18 C 0.384 3.616 19 O -0.476 6.476 20 C -0.043 4.043 21 H 0.294 0.706 22 H 0.105 0.895 23 H 0.133 0.867 24 H 0.086 0.914 25 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.124 -3.279 -0.695 3.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.157 4.157 3 Si 0.744 3.256 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.444 4.444 8 H 0.112 0.888 9 C 0.104 3.896 10 C -0.235 4.235 11 C -0.173 4.173 12 S 0.297 5.703 13 C -0.213 4.213 14 F -0.101 7.101 15 C -0.130 4.130 16 C -0.177 4.177 17 C -0.154 4.154 18 C 0.245 3.755 19 O -0.351 6.351 20 C -0.062 4.062 21 H 0.106 0.894 22 H 0.123 0.877 23 H 0.151 0.849 24 H 0.102 0.898 25 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.700 -3.396 -0.037 3.798 hybrid contribution -0.806 0.815 -0.696 1.341 sum 0.894 -2.581 -0.733 2.828 Atomic orbital electron populations 1.69797 1.07908 1.31069 1.29629 1.26194 0.94995 1.02507 0.92027 0.86011 0.80923 0.79444 0.79214 1.17801 1.19049 1.19363 1.19906 0.98760 0.90697 1.34995 0.88769 1.17421 0.90844 0.92090 0.89197 1.20088 1.05547 0.89596 1.08278 1.21982 0.99306 0.94806 1.01173 1.83863 1.32387 0.99996 1.54009 1.21012 1.06248 0.80727 1.13295 1.91379 1.91830 1.31722 1.95216 1.19708 1.00872 0.91150 1.01238 1.17993 1.00325 0.91185 1.08216 1.21248 0.99420 0.91994 1.02779 1.23725 0.82808 0.91993 0.76968 1.90484 1.62391 1.34525 1.47737 1.21948 0.94003 0.96953 0.93342 0.89433 0.87731 0.84909 0.89811 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.53 10.98 55.54 0.61 -16.92 15 2 C 0.07 1.43 5.10 -17.35 -0.09 1.34 15 3 Si 0.92 16.26 29.60 -169.99 -5.03 11.23 15 4 H -0.25 -4.42 7.11 56.52 0.40 -4.02 15 5 H -0.27 -4.69 7.11 56.52 0.40 -4.28 15 6 H -0.27 -4.69 7.11 56.52 0.40 -4.29 15 7 C -0.42 -9.53 9.00 -37.90 -0.34 -9.87 15 8 H 0.09 2.02 7.91 -52.49 -0.42 1.61 15 9 C 0.11 2.63 5.55 -107.09 -0.59 2.04 15 10 C -0.21 -4.67 9.72 -38.66 -0.38 -5.05 15 11 C -0.06 -1.24 6.45 -38.63 -0.25 -1.49 15 12 S 0.04 0.73 23.29 -107.50 -2.50 -1.78 15 13 C -0.08 -1.53 8.29 29.02 0.24 -1.29 15 14 F -0.12 -2.22 17.32 2.25 0.04 -2.18 15 15 C -0.10 -1.84 9.78 -40.77 -0.40 -2.24 15 16 C -0.17 -3.62 6.03 -104.67 -0.63 -4.26 15 17 C -0.15 -3.27 6.06 -102.57 -0.62 -3.89 15 18 C 0.38 7.39 11.29 34.13 0.39 7.78 15 19 O -0.48 -10.49 17.13 5.52 0.09 -10.40 15 20 C -0.04 -1.03 8.17 -38.61 -0.32 -1.35 15 21 H 0.29 6.11 8.30 -40.82 -0.34 5.78 15 22 H 0.10 2.20 8.06 -52.49 -0.42 1.77 15 23 H 0.13 2.10 7.41 -52.49 -0.39 1.71 15 24 H 0.09 1.27 7.31 -52.49 -0.38 0.89 15 25 H 0.14 3.52 5.71 -52.49 -0.30 3.22 15 LS Contribution 249.77 15.07 3.76 3.76 Total: -1.00 -25.11 249.77 -7.06 -32.17 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -1.04 Total: 2.39 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -2.99 Total: -18.27 kcal Atomic # 7 Polarization: -17.53 SS G_CDS: 0.61 Total: -16.92 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 16.26 SS G_CDS: -5.03 Total: 11.23 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.50 Total: -1.78 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -25.11 -7.06 -32.17 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396296972.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.385 kcal (2) G-P(sol) polarization free energy of solvation -25.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds