Wall clock time and date at job start Mon Mar 30 2020 06:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31138 * 1 3 3 Si 1.86796 * 120.00050 * 2 1 4 4 H 1.48504 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47216 * 299.99999 * 3 2 1 6 6 H 1.48506 * 109.47256 * 60.00064 * 3 2 1 7 7 C 1.39688 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99464 * 199.93251 * 7 2 1 9 9 C 1.40704 * 120.00287 * 19.92925 * 7 2 1 10 10 C 1.36927 * 123.18849 * 31.91027 * 9 7 2 11 11 F 1.35106 * 124.53662 * 0.02562 * 10 9 7 12 12 S 1.75187 * 110.92002 * 180.02562 * 10 9 7 13 13 C 1.75849 * 92.72230 * 359.83838 * 12 10 9 14 14 C 1.39257 * 110.60214 * 0.29257 * 13 12 10 15 15 C 1.40662 * 119.14885 * 179.84342 * 14 13 12 16 16 C 1.37747 * 120.85436 * 359.78033 * 15 14 13 17 17 C 1.37993 * 120.52530 * 359.97438 * 16 15 14 18 18 C 1.39542 * 119.90829 * 0.02562 * 17 16 15 19 19 C 1.46738 * 119.99108 * 179.97438 * 18 17 16 20 20 O 1.21303 * 120.00089 * 359.97438 * 19 18 17 21 21 H 0.97004 * 119.99427 * 359.97438 * 1 2 3 22 22 H 1.07999 * 119.57271 * 179.76046 * 15 14 13 23 23 H 1.07997 * 119.73881 * 180.02562 * 16 15 14 24 24 H 1.07994 * 120.04832 * 179.97438 * 17 16 15 25 25 H 1.08002 * 119.99806 * 179.72225 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3114 0.0000 0.0000 3 14 2.2454 1.6177 0.0000 4 1 3.7054 1.3463 0.0006 5 1 1.8867 2.3964 -1.2124 6 1 1.8866 2.3964 1.2125 7 6 2.0097 -1.2098 -0.0005 8 1 3.0413 -1.2379 0.3183 9 6 1.3694 -2.3916 -0.4164 10 6 0.3899 -2.4167 -1.3729 11 9 -0.0732 -1.3271 -2.0238 12 16 -0.1823 -4.0509 -1.6396 13 6 0.9197 -4.7213 -0.4444 14 6 1.6873 -3.7136 0.1341 15 6 2.6305 -4.0520 1.1212 16 6 2.7970 -5.3597 1.5205 17 6 2.0387 -6.3662 0.9582 18 6 1.0951 -6.0608 -0.0234 19 6 0.2882 -7.1298 -0.6229 20 8 0.4418 -8.2788 -0.2656 21 1 -0.4849 0.8401 0.0004 22 1 3.2321 -3.2764 1.5717 23 1 3.5262 -5.5992 2.2803 24 1 2.1759 -7.3890 1.2768 25 1 -0.4453 -6.8930 -1.3795 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396297120.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:45 Heat of formation + Delta-G solvation = -42.137746 kcal Electronic energy + Delta-G solvation = -15211.382005 eV Core-core repulsion = 12388.752480 eV Total energy + Delta-G solvation = -2822.629524 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.80425 -39.35176 -37.88856 -34.75430 -32.50667 -30.92687 -28.33037 -26.13080 -23.98060 -22.63751 -20.77450 -19.57778 -17.55755 -16.99979 -15.90683 -15.52102 -15.36042 -14.89875 -14.12527 -14.02556 -14.01185 -13.72718 -13.24647 -12.72577 -12.36039 -12.26898 -11.80600 -11.34441 -11.29499 -10.93375 -10.53686 -10.42998 -9.98382 -9.67570 -9.29192 -9.27646 -8.72226 -7.44479 -7.07716 -6.83906 -4.54207 0.94608 1.62278 2.28941 2.64560 2.90427 3.01979 3.06020 3.08830 3.51740 3.87521 4.26999 4.58381 4.94850 5.28663 5.32806 5.52724 5.71509 5.84999 6.10259 6.39088 6.54643 6.69222 6.81210 6.97593 7.18876 7.35799 7.56080 7.66178 8.15474 8.48331 8.63028 10.08742 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.033820 B = 0.007785 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.713662 B = 3595.919425 C = 4310.802095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.070 3.930 3 Si 0.912 3.088 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.432 4.432 8 H 0.085 0.915 9 C 0.065 3.935 10 C -0.155 4.155 11 F -0.106 7.106 12 S 0.021 5.979 13 C -0.081 4.081 14 C -0.059 4.059 15 C -0.034 4.034 16 C -0.158 4.158 17 C -0.051 4.051 18 C -0.178 4.178 19 C 0.388 3.612 20 O -0.476 6.476 21 H 0.283 0.717 22 H 0.128 0.872 23 H 0.124 0.876 24 H 0.130 0.870 25 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.602 -4.511 0.835 5.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.151 4.151 3 Si 0.736 3.264 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.464 4.464 8 H 0.103 0.897 9 C 0.055 3.945 10 C -0.289 4.289 11 F -0.085 7.085 12 S 0.280 5.720 13 C -0.198 4.198 14 C -0.068 4.068 15 C -0.054 4.054 16 C -0.180 4.180 17 C -0.071 4.071 18 C -0.186 4.186 19 C 0.249 3.751 20 O -0.352 6.352 21 H 0.094 0.906 22 H 0.146 0.854 23 H 0.142 0.858 24 H 0.147 0.853 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.323 -5.387 -0.002 5.547 hybrid contribution 1.044 1.918 0.800 2.326 sum 2.367 -3.469 0.798 4.274 Atomic orbital electron populations 1.69932 1.07652 1.29729 1.31662 1.25812 0.94733 1.01328 0.93234 0.86184 0.80821 0.80769 0.78619 1.18292 1.19612 1.19981 1.18876 0.98648 0.90518 1.38311 0.89662 1.17366 0.94379 0.90816 0.91951 1.20679 1.13950 0.83871 1.10394 1.91264 1.88038 1.50065 1.79111 1.83114 1.43049 1.03033 1.42821 1.22554 1.00743 0.95643 1.00869 1.19326 0.97032 0.93062 0.97354 1.21220 0.94579 0.96026 0.93586 1.20769 1.02048 0.92612 1.02529 1.21114 0.93070 0.99357 0.93551 1.20043 1.03361 0.92197 1.03016 1.23832 0.82235 0.86930 0.82113 1.90464 1.63870 1.23239 1.57630 0.90598 0.85390 0.85759 0.85258 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.95 10.95 55.54 0.61 -19.34 15 2 C 0.07 1.72 4.82 -17.31 -0.08 1.63 15 3 Si 0.91 18.40 29.60 -169.99 -5.03 13.37 15 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 7 C -0.43 -10.86 8.91 -38.11 -0.34 -11.20 15 8 H 0.09 1.99 7.92 -52.48 -0.42 1.58 15 9 C 0.07 1.64 5.54 -106.03 -0.59 1.05 15 10 C -0.16 -3.96 7.62 30.26 0.23 -3.73 15 11 F -0.11 -2.86 14.66 2.25 0.03 -2.83 15 12 S 0.02 0.43 22.55 -107.50 -2.42 -1.99 15 13 C -0.08 -1.66 6.33 -37.96 -0.24 -1.90 15 14 C -0.06 -1.29 6.00 -105.19 -0.63 -1.92 15 15 C -0.03 -0.63 9.81 -38.85 -0.38 -1.01 15 16 C -0.16 -2.47 9.99 -39.85 -0.40 -2.87 15 17 C -0.05 -0.83 9.58 -39.19 -0.38 -1.20 15 18 C -0.18 -3.19 5.90 -104.73 -0.62 -3.81 15 19 C 0.39 6.32 11.28 34.16 0.39 6.70 15 20 O -0.48 -8.54 17.13 5.54 0.09 -8.45 15 21 H 0.28 6.76 8.30 -40.82 -0.34 6.42 15 22 H 0.13 2.16 8.02 -52.49 -0.42 1.74 15 23 H 0.12 1.52 8.06 -52.49 -0.42 1.09 15 24 H 0.13 1.87 7.62 -52.49 -0.40 1.47 15 25 H 0.10 1.34 7.64 -52.49 -0.40 0.94 15 LS Contribution 249.52 15.07 3.76 3.76 Total: -1.00 -28.11 249.52 -7.19 -35.30 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -1.19 Total: -1.56 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -3.04 Total: -18.25 kcal Atomic # 7 Polarization: -19.95 SS G_CDS: 0.61 Total: -19.34 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.03 Total: -2.83 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -2.42 Total: -1.99 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.11 -7.19 -35.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396297120.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.839 kcal (2) G-P(sol) polarization free energy of solvation -28.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds