Wall clock time and date at job start Mon Mar 30 2020 06:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30435 * 1 3 3 Si 1.86806 * 119.99611 * 2 1 4 4 H 1.48499 * 109.46597 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.47019 * 299.99308 * 3 2 1 6 6 H 1.48497 * 109.47028 * 60.00135 * 3 2 1 7 7 C 1.40702 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00428 * 198.17964 * 7 2 1 9 9 C 1.39537 * 119.99607 * 18.18534 * 7 2 1 10 10 C 1.38932 * 123.35912 * 220.38864 * 9 7 2 11 11 C 1.41050 * 124.65064 * 0.04252 * 10 9 7 12 12 O 1.21514 * 119.99522 * 5.26532 * 11 10 9 13 13 S 1.75174 * 110.70515 * 179.54315 * 10 9 7 14 14 C 1.75863 * 92.84736 * 0.46027 * 13 10 9 15 15 C 1.40100 * 129.57056 * 179.47224 * 14 13 10 16 16 C 1.37699 * 120.46454 * 179.97438 * 15 14 13 17 17 F 1.35102 * 119.95270 * 179.97438 * 16 15 14 18 18 C 1.38967 * 120.09213 * 0.02562 * 16 15 14 19 19 C 1.37247 * 120.24209 * 359.97438 * 18 16 15 20 20 C 1.39411 * 110.83856 * 359.67178 * 14 13 10 21 21 H 0.97002 * 119.99839 * 354.93350 * 1 2 3 22 22 H 1.07996 * 119.99974 * 185.27127 * 11 10 9 23 23 H 1.08002 * 119.76304 * 359.93762 * 15 14 13 24 24 H 1.08001 * 119.88095 * 179.97438 * 18 16 15 25 25 H 1.08003 * 119.74686 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3043 0.0000 0.0000 3 14 2.2383 1.6179 0.0000 4 1 3.6982 1.3465 0.0006 5 1 1.8796 2.3964 -1.2125 6 1 1.8795 2.3965 1.2125 7 6 2.0079 -1.2185 0.0005 8 1 3.0475 -1.2417 0.2923 9 6 1.3625 -2.3969 -0.3761 10 6 1.5523 -3.6120 0.2702 11 6 2.4081 -3.8081 1.3742 12 8 2.9693 -2.8585 1.8840 13 16 0.5723 -4.8641 -0.4649 14 6 -0.0938 -3.7620 -1.6624 15 6 -1.0089 -4.0114 -2.6935 16 6 -1.4079 -2.9959 -3.5337 17 9 -2.2905 -3.2481 -4.5249 18 6 -0.9031 -1.7123 -3.3640 19 6 -0.0058 -1.4497 -2.3593 20 6 0.4179 -2.4764 -1.4922 21 1 -0.4850 0.8368 0.0742 22 1 2.5645 -4.8022 1.7662 23 1 -1.4038 -5.0072 -2.8307 24 1 -1.2181 -0.9186 -4.0251 25 1 0.3817 -0.4493 -2.2349 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396297141.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:39 Heat of formation + Delta-G solvation = -53.440444 kcal Electronic energy + Delta-G solvation = -15366.735189 eV Core-core repulsion = 12543.615543 eV Total energy + Delta-G solvation = -2823.119646 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.46079 -38.66988 -37.23338 -34.76411 -32.71536 -30.34608 -28.57627 -27.08284 -23.53858 -22.51493 -21.00977 -19.12399 -17.61484 -17.11393 -15.97914 -15.61615 -15.28270 -15.14285 -14.70587 -13.93331 -13.54943 -13.22063 -13.09498 -12.61185 -12.37911 -12.11115 -11.87787 -11.80857 -11.52055 -10.88749 -10.78928 -10.27870 -9.91618 -9.67260 -9.42440 -8.77792 -8.21248 -7.55332 -7.35435 -6.84231 -4.83265 1.33048 1.79174 2.55867 2.58352 2.85145 2.93490 2.99985 3.42337 3.64554 4.08796 4.17927 4.81521 4.88248 5.33162 5.43284 5.67071 5.87746 6.02329 6.25746 6.53236 6.60428 6.70501 6.80094 6.94699 7.21746 7.46878 7.57838 7.99958 8.18429 8.33134 9.14883 9.57537 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.018836 B = 0.011156 C = 0.007248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.127916 B = 2509.146143 C = 3862.226342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.068 3.932 3 Si 0.918 3.082 4 H -0.251 1.251 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.360 4.360 8 H 0.112 0.888 9 C 0.161 3.839 10 C -0.453 4.453 11 C 0.391 3.609 12 O -0.519 6.519 13 S 0.014 5.986 14 C -0.083 4.083 15 C -0.146 4.146 16 C 0.102 3.898 17 F -0.149 7.149 18 C -0.185 4.185 19 C -0.009 4.009 20 C -0.061 4.061 21 H 0.296 0.704 22 H 0.048 0.952 23 H 0.126 0.874 24 H 0.127 0.873 25 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 -0.444 -5.025 5.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.157 4.157 3 Si 0.740 3.260 4 H -0.174 1.174 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.389 4.389 8 H 0.130 0.870 9 C 0.152 3.848 10 C -0.569 4.569 11 C 0.263 3.737 12 O -0.405 6.405 13 S 0.273 5.727 14 C -0.199 4.199 15 C -0.171 4.171 16 C 0.081 3.919 17 F -0.127 7.127 18 C -0.207 4.207 19 C -0.029 4.029 20 C -0.070 4.070 21 H 0.107 0.893 22 H 0.065 0.935 23 H 0.144 0.856 24 H 0.145 0.855 25 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.966 -1.383 -4.445 5.054 hybrid contribution -0.017 1.901 -0.473 1.959 sum -1.983 0.518 -4.918 5.328 Atomic orbital electron populations 1.69644 1.08232 1.31444 1.27674 1.26416 0.94922 1.02399 0.91984 0.86053 0.81638 0.79058 0.79248 1.17354 1.18978 1.19043 1.19777 0.99267 0.89405 1.30409 0.87007 1.17602 0.86534 0.92835 0.87852 1.22665 1.23447 0.97284 1.13501 1.20474 0.79658 0.91628 0.81983 1.90460 1.46140 1.45271 1.58629 1.82868 1.46215 1.13524 1.30115 1.22373 1.00238 0.98171 0.99113 1.20204 1.01509 0.98768 0.96663 1.17293 0.92128 0.94278 0.88225 1.91431 1.66689 1.95023 1.59591 1.20763 1.02578 0.95174 1.02186 1.20904 0.92877 0.98610 0.90515 1.19648 0.98537 0.91672 0.97100 0.89262 0.93550 0.85571 0.85534 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.00 10.89 55.59 0.61 -16.39 15 2 C 0.07 1.53 4.09 -17.22 -0.07 1.46 15 3 Si 0.92 16.84 29.61 -169.99 -5.03 11.81 15 4 H -0.25 -4.69 7.11 56.52 0.40 -4.29 15 5 H -0.27 -4.58 7.11 56.52 0.40 -4.18 15 6 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 7 C -0.36 -9.01 7.70 -38.17 -0.29 -9.30 15 8 H 0.11 2.90 6.85 -52.49 -0.36 2.54 15 9 C 0.16 4.07 5.38 -105.86 -0.57 3.50 15 10 C -0.45 -11.08 6.24 -38.26 -0.24 -11.32 15 11 C 0.39 9.36 11.41 31.80 0.36 9.72 15 12 O -0.52 -13.88 15.34 5.35 0.08 -13.80 15 13 S 0.01 0.29 23.11 -107.50 -2.48 -2.20 15 14 C -0.08 -1.80 6.42 -38.45 -0.25 -2.05 15 15 C -0.15 -2.79 10.04 -39.08 -0.39 -3.18 15 16 C 0.10 1.88 7.29 -39.51 -0.29 1.59 15 17 F -0.15 -2.56 17.26 2.25 0.04 -2.52 15 18 C -0.18 -3.39 9.99 -39.67 -0.40 -3.79 15 19 C -0.01 -0.19 8.44 -38.93 -0.33 -0.52 15 20 C -0.06 -1.41 5.54 -105.15 -0.58 -1.99 15 21 H 0.30 5.96 8.29 -40.82 -0.34 5.62 15 22 H 0.05 0.98 8.06 -52.49 -0.42 0.55 15 23 H 0.13 2.10 8.06 -52.49 -0.42 1.68 15 24 H 0.13 1.96 8.06 -52.49 -0.42 1.53 15 25 H 0.13 2.66 6.11 -52.48 -0.32 2.34 15 LS Contribution 245.50 15.07 3.70 3.70 Total: -1.00 -26.71 245.50 -7.22 -33.93 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -1.08 Total: 1.34 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -3.04 Total: -15.88 kcal Atomic # 7 Polarization: -17.00 SS G_CDS: 0.61 Total: -16.39 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.08 Total: -13.80 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.81 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.48 Total: -2.20 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -26.71 -7.22 -33.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396297141.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.507 kcal (2) G-P(sol) polarization free energy of solvation -26.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds