Wall clock time and date at job start Mon Mar 30 2020 06:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86795 * 119.99996 * 2 1 4 4 H 1.48499 * 109.47453 * 85.05177 * 3 2 1 5 5 H 1.48505 * 109.47063 * 205.05025 * 3 2 1 6 6 H 1.48500 * 109.47165 * 325.04478 * 3 2 1 7 7 C 1.40390 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00029 * 171.84495 * 7 2 1 9 9 C 1.39730 * 120.00335 * 351.83769 * 7 2 1 10 10 C 1.37243 * 124.84542 * 171.71093 * 9 7 2 11 11 C 1.39368 * 115.09620 * 180.02562 * 10 9 7 12 12 C 1.40618 * 112.88279 * 0.02562 * 11 10 9 13 13 C 1.39087 * 119.95900 * 180.02562 * 12 11 10 14 14 C 1.39554 * 120.21493 * 359.97438 * 13 12 11 15 15 C 1.46794 * 120.06472 * 180.02562 * 14 13 12 16 16 O 1.21321 * 120.00429 * 180.02562 * 15 14 13 17 17 C 1.40556 * 119.87589 * 0.02562 * 14 13 12 18 18 C 1.35677 * 120.42688 * 359.97438 * 17 14 13 19 19 F 1.35100 * 119.65699 * 179.97438 * 18 17 14 20 20 S 1.75456 * 124.84275 * 351.41789 * 9 7 2 21 21 H 0.97004 * 119.99986 * 359.97438 * 1 2 3 22 22 H 1.07995 * 122.45070 * 0.02713 * 10 9 7 23 23 H 1.07999 * 119.89276 * 180.02562 * 13 12 11 24 24 H 1.08002 * 120.00083 * 0.02562 * 15 14 13 25 25 H 1.07991 * 119.78888 * 180.02562 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.3832 2.1068 1.3948 5 1 3.5862 1.4122 -0.5928 6 1 1.4940 2.6201 -0.8021 7 6 2.0081 -1.2159 -0.0005 8 1 3.0799 -1.2206 -0.1332 9 6 1.3200 -2.4199 0.1707 10 6 1.8743 -3.6671 0.0267 11 6 1.0008 -4.7310 0.2448 12 6 -0.3001 -4.3114 0.5749 13 6 -1.2919 -5.2543 0.8238 14 6 -1.0006 -6.6169 0.7466 15 6 -2.0500 -7.6092 1.0093 16 8 -1.7955 -8.7936 0.9424 17 6 0.2993 -7.0375 0.4167 18 6 1.2748 -6.1267 0.1719 19 9 2.5190 -6.5482 -0.1433 20 16 -0.3740 -2.5530 0.6077 21 1 -0.4850 0.8401 0.0004 22 1 2.9115 -3.8135 -0.2364 23 1 -2.2907 -4.9309 1.0768 24 1 -3.0487 -7.2851 1.2623 25 1 0.5230 -8.0923 0.3570 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396297194.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:34 Heat of formation + Delta-G solvation = -70.134338 kcal Electronic energy + Delta-G solvation = -14836.416548 eV Core-core repulsion = 12012.573001 eV Total energy + Delta-G solvation = -2823.843547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.89018 -38.85923 -37.46377 -35.27010 -33.41126 -29.76121 -29.55956 -26.40296 -23.72617 -21.98792 -21.02148 -19.50948 -18.21122 -16.98290 -16.02391 -15.58385 -15.04768 -14.73252 -14.71551 -14.25178 -14.10448 -13.57333 -13.32654 -12.69855 -12.39094 -12.06752 -11.90708 -11.71969 -11.41335 -10.98339 -10.67719 -10.54043 -10.25711 -9.66471 -9.43667 -9.20393 -8.56723 -7.73575 -7.60315 -6.63125 -4.99664 1.20455 2.08916 2.42631 2.67034 2.74639 2.84872 2.92163 3.32687 3.47375 3.49639 4.33610 4.71723 4.80292 5.31529 5.58460 5.70593 5.88340 6.27640 6.30688 6.47512 6.65777 6.85751 6.96877 7.01306 7.14230 7.36157 7.54985 7.74836 7.92086 8.01688 8.03828 9.27720 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.042188 B = 0.006144 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.529329 B = 4556.539788 C = 5198.713785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.052 3.948 3 Si 0.941 3.059 4 H -0.259 1.259 5 H -0.253 1.253 6 H -0.267 1.267 7 C -0.356 4.356 8 H 0.107 0.893 9 C 0.058 3.942 10 C -0.347 4.347 11 C 0.024 3.976 12 C -0.271 4.271 13 C 0.011 3.989 14 C -0.271 4.271 15 C 0.391 3.609 16 O -0.497 6.497 17 C -0.079 4.079 18 C 0.032 3.968 19 F -0.155 7.155 20 S 0.141 5.859 21 H 0.307 0.693 22 H 0.115 0.885 23 H 0.117 0.883 24 H 0.089 0.911 25 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.132 2.513 1.178 3.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.174 4.174 3 Si 0.763 3.237 4 H -0.184 1.184 5 H -0.176 1.176 6 H -0.192 1.192 7 C -0.390 4.390 8 H 0.125 0.875 9 C -0.062 4.062 10 C -0.371 4.371 11 C 0.014 3.986 12 C -0.385 4.385 13 C -0.012 4.012 14 C -0.275 4.275 15 C 0.255 3.745 16 O -0.375 6.375 17 C -0.100 4.100 18 C 0.011 3.989 19 F -0.134 7.134 20 S 0.402 5.598 21 H 0.120 0.880 22 H 0.133 0.867 23 H 0.135 0.865 24 H 0.105 0.895 25 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.274 3.057 1.412 4.696 hybrid contribution 1.711 -0.278 -0.432 1.787 sum -1.563 2.779 0.980 3.335 Atomic orbital electron populations 1.68804 1.08057 1.32002 1.28730 1.26512 0.95271 1.03497 0.92078 0.85683 0.80363 0.77623 0.80034 1.18384 1.17618 1.19187 1.19596 0.96859 0.88727 1.33818 0.87483 1.21534 0.94974 0.95801 0.93891 1.19681 1.00420 0.89811 1.27144 1.18109 0.93408 0.91518 0.95532 1.23199 0.96630 1.01979 1.16704 1.20473 0.96826 0.90689 0.93166 1.19790 0.95594 0.93906 1.18208 1.23582 0.91968 0.87594 0.71386 1.90453 1.84976 1.20548 1.41569 1.20313 0.92083 0.98597 0.99004 1.17153 0.80069 0.91227 1.10429 1.91363 1.40144 1.90523 1.91382 1.84640 1.10081 0.91712 1.73369 0.87978 0.86701 0.86469 0.89508 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -15.62 10.77 55.57 0.60 -15.02 15 2 C 0.05 1.05 5.47 -17.26 -0.09 0.95 15 3 Si 0.94 14.97 29.57 -169.99 -5.03 9.94 15 4 H -0.26 -4.10 7.11 56.52 0.40 -3.69 15 5 H -0.25 -4.01 7.11 56.52 0.40 -3.61 15 6 H -0.27 -4.15 7.11 56.52 0.40 -3.74 15 7 C -0.36 -7.96 9.26 -38.22 -0.35 -8.31 15 8 H 0.11 2.24 7.87 -52.49 -0.41 1.83 15 9 C 0.06 1.39 6.07 -39.39 -0.24 1.15 15 10 C -0.35 -8.47 10.03 -39.52 -0.40 -8.86 15 11 C 0.02 0.56 5.86 -106.97 -0.63 -0.07 15 12 C -0.27 -6.02 6.45 -38.37 -0.25 -6.27 15 13 C 0.01 0.21 9.80 -38.78 -0.38 -0.17 15 14 C -0.27 -5.20 5.87 -105.07 -0.62 -5.82 15 15 C 0.39 6.49 11.43 34.19 0.39 6.88 15 16 O -0.50 -9.79 17.15 5.52 0.09 -9.70 15 17 C -0.08 -1.65 9.45 -39.62 -0.37 -2.02 15 18 C 0.03 0.73 7.32 -38.89 -0.28 0.44 15 19 F -0.16 -3.51 17.15 2.25 0.04 -3.47 15 20 S 0.14 3.14 20.30 -107.50 -2.18 0.96 15 21 H 0.31 5.59 8.29 -40.82 -0.34 5.25 15 22 H 0.12 2.74 8.06 -52.49 -0.42 2.32 15 23 H 0.12 1.82 8.06 -52.49 -0.42 1.40 15 24 H 0.09 1.07 8.06 -52.49 -0.42 0.65 15 25 H 0.12 2.47 7.63 -52.49 -0.40 2.07 15 LS Contribution 251.25 15.07 3.79 3.79 Total: -1.00 -25.99 251.25 -7.13 -33.12 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -1.22 Total: 2.47 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -3.22 Total: -22.09 kcal Atomic # 7 Polarization: -15.62 SS G_CDS: 0.60 Total: -15.02 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.04 Total: -3.47 kcal Atomic # 14 Polarization: 14.97 SS G_CDS: -5.03 Total: 9.94 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -2.18 Total: 0.96 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -25.99 -7.13 -33.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396297194.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.014 kcal (2) G-P(sol) polarization free energy of solvation -25.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds