Wall clock time and date at job start Mon Mar 30 2020 06:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86795 * 119.99996 * 2 1 4 4 H 1.48499 * 109.47453 * 85.05177 * 3 2 1 5 5 H 1.48505 * 109.47063 * 205.05025 * 3 2 1 6 6 H 1.48500 * 109.47165 * 325.04478 * 3 2 1 7 7 C 1.40390 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00029 * 171.84495 * 7 2 1 9 9 C 1.39730 * 120.00335 * 351.83769 * 7 2 1 10 10 C 1.37243 * 124.84542 * 171.71093 * 9 7 2 11 11 C 1.39368 * 115.09620 * 180.02562 * 10 9 7 12 12 C 1.40618 * 112.88279 * 0.02562 * 11 10 9 13 13 C 1.39087 * 119.95900 * 180.02562 * 12 11 10 14 14 C 1.39554 * 120.21493 * 359.97438 * 13 12 11 15 15 C 1.46794 * 120.06472 * 180.02562 * 14 13 12 16 16 O 1.21321 * 120.00429 * 180.02562 * 15 14 13 17 17 C 1.40556 * 119.87589 * 0.02562 * 14 13 12 18 18 C 1.35677 * 120.42688 * 359.97438 * 17 14 13 19 19 F 1.35100 * 119.65699 * 179.97438 * 18 17 14 20 20 S 1.75456 * 124.84275 * 351.41789 * 9 7 2 21 21 H 0.97004 * 119.99986 * 359.97438 * 1 2 3 22 22 H 1.07995 * 122.45070 * 0.02713 * 10 9 7 23 23 H 1.07999 * 119.89276 * 180.02562 * 13 12 11 24 24 H 1.08002 * 120.00083 * 0.02562 * 15 14 13 25 25 H 1.07991 * 119.78888 * 180.02562 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.3832 2.1068 1.3948 5 1 3.5862 1.4122 -0.5928 6 1 1.4940 2.6201 -0.8021 7 6 2.0081 -1.2159 -0.0005 8 1 3.0799 -1.2206 -0.1332 9 6 1.3200 -2.4199 0.1707 10 6 1.8743 -3.6671 0.0267 11 6 1.0008 -4.7310 0.2448 12 6 -0.3001 -4.3114 0.5749 13 6 -1.2919 -5.2543 0.8238 14 6 -1.0006 -6.6169 0.7466 15 6 -2.0500 -7.6092 1.0093 16 8 -1.7955 -8.7936 0.9424 17 6 0.2993 -7.0375 0.4167 18 6 1.2748 -6.1267 0.1719 19 9 2.5190 -6.5482 -0.1433 20 16 -0.3740 -2.5530 0.6077 21 1 -0.4850 0.8401 0.0004 22 1 2.9115 -3.8135 -0.2364 23 1 -2.2907 -4.9309 1.0768 24 1 -3.0487 -7.2851 1.2623 25 1 0.5230 -8.0923 0.3570 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396297194.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:34 Heat of formation + Delta-G solvation = -83.143704 kcal Electronic energy + Delta-G solvation = -14836.980676 eV Core-core repulsion = 12012.573001 eV Total energy + Delta-G solvation = -2824.407676 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.65639 -40.39930 -39.04635 -36.90040 -35.04533 -31.40318 -31.21895 -28.02553 -25.33656 -23.60278 -22.59339 -21.17253 -19.88530 -18.57454 -17.61781 -17.12511 -16.68836 -16.48263 -16.24138 -15.82527 -15.70248 -15.05203 -14.84818 -14.28549 -14.06387 -13.70802 -13.51260 -13.15160 -13.05046 -12.58213 -12.09174 -12.02436 -11.88896 -11.26583 -11.12006 -10.64240 -10.25941 -9.44181 -9.16478 -8.32995 -6.72411 -0.35250 0.39795 0.94683 1.23449 1.34744 1.51317 1.54369 1.68739 1.93998 2.07976 2.72995 3.02095 3.42007 3.72780 3.98320 4.17174 4.48173 4.64912 4.73808 4.83206 4.97425 5.24187 5.29499 5.36397 5.47096 5.62380 5.87643 6.05753 6.20739 6.33820 6.68655 7.76727 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.042188 B = 0.006144 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.529329 B = 4556.539788 C = 5198.713785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.021 3.979 3 Si 1.013 2.987 4 H -0.253 1.253 5 H -0.255 1.255 6 H -0.255 1.255 7 C -0.378 4.378 8 H 0.109 0.891 9 C 0.029 3.971 10 C -0.387 4.387 11 C 0.000 4.000 12 C -0.289 4.289 13 C 0.022 3.978 14 C -0.268 4.268 15 C 0.406 3.594 16 O -0.525 6.525 17 C -0.081 4.081 18 C 0.003 3.997 19 F -0.163 7.163 20 S 0.154 5.846 21 H 0.321 0.679 22 H 0.099 0.901 23 H 0.164 0.836 24 H 0.156 0.844 25 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.280 3.340 1.757 5.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.202 4.202 3 Si 0.830 3.170 4 H -0.177 1.177 5 H -0.178 1.178 6 H -0.178 1.178 7 C -0.412 4.412 8 H 0.126 0.874 9 C -0.091 4.091 10 C -0.410 4.410 11 C -0.009 4.009 12 C -0.403 4.403 13 C 0.000 4.000 14 C -0.272 4.272 15 C 0.271 3.729 16 O -0.404 6.404 17 C -0.102 4.102 18 C -0.018 4.018 19 F -0.142 7.142 20 S 0.414 5.586 21 H 0.135 0.865 22 H 0.117 0.883 23 H 0.182 0.818 24 H 0.171 0.829 25 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.438 3.856 1.989 6.957 hybrid contribution 2.279 -0.637 -0.603 2.442 sum -3.159 3.219 1.386 4.718 Atomic orbital electron populations 1.68768 1.09169 1.33779 1.27671 1.27388 0.95999 1.05916 0.90905 0.84668 0.78848 0.73189 0.80296 1.17741 1.17803 1.17834 1.19945 0.97337 0.89536 1.34357 0.87356 1.21834 0.96360 0.96132 0.94742 1.19689 1.00199 0.90876 1.30266 1.18333 0.94430 0.91809 0.96317 1.23509 0.96785 1.02598 1.17382 1.20922 0.98057 0.89898 0.91099 1.20349 0.95566 0.95015 1.16270 1.24252 0.93165 0.86075 0.69445 1.90471 1.85577 1.21890 1.42476 1.20585 0.92823 0.98547 0.98293 1.17423 0.80465 0.91498 1.12369 1.91325 1.40740 1.90522 1.91656 1.84256 1.08874 0.91897 1.73590 0.86500 0.88309 0.81835 0.82854 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -31.34 10.77 21.91 0.24 -31.11 15 2 C 0.02 0.85 5.47 85.40 0.47 1.31 15 3 Si 1.01 29.46 29.57 68.60 2.03 31.49 15 4 H -0.25 -7.12 7.11 99.48 0.71 -6.41 15 5 H -0.25 -7.42 7.11 99.48 0.71 -6.72 15 6 H -0.25 -6.87 7.11 99.48 0.71 -6.16 15 7 C -0.38 -17.38 9.26 23.15 0.21 -17.16 15 8 H 0.11 4.74 7.87 -2.91 -0.02 4.72 15 9 C 0.03 1.46 6.07 22.40 0.14 1.60 15 10 C -0.39 -20.05 10.03 22.31 0.22 -19.82 15 11 C 0.00 0.00 5.86 -21.38 -0.13 -0.13 15 12 C -0.29 -12.73 6.45 23.05 0.15 -12.58 15 13 C 0.02 0.79 9.80 22.79 0.22 1.02 15 14 C -0.27 -9.54 5.87 -20.16 -0.12 -9.65 15 15 C 0.41 11.61 11.43 70.06 0.80 12.41 15 16 O -0.53 -18.94 17.15 -3.16 -0.05 -18.99 15 17 C -0.08 -3.37 9.45 22.24 0.21 -3.16 15 18 C 0.00 0.14 7.32 22.72 0.17 0.30 15 19 F -0.16 -7.76 17.15 44.97 0.77 -6.99 15 20 S 0.15 6.82 20.30 -56.49 -1.15 5.67 15 21 H 0.32 11.18 8.29 -92.71 -0.77 10.41 15 22 H 0.10 5.17 8.06 -2.91 -0.02 5.14 15 23 H 0.16 4.21 8.06 -2.91 -0.02 4.18 15 24 H 0.16 2.62 8.06 -2.91 -0.02 2.60 15 25 H 0.13 5.10 7.63 -2.92 -0.02 5.08 15 Total: -1.00 -58.37 251.25 5.42 -52.95 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.24 Total: 12.84 kcal Atomic # 6 Polarization: -48.22 SS G_CDS: 2.35 Total: -45.87 kcal Atomic # 7 Polarization: -31.34 SS G_CDS: 0.24 Total: -31.11 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.05 Total: -18.99 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 0.77 Total: -6.99 kcal Atomic # 14 Polarization: 29.46 SS G_CDS: 2.03 Total: 31.49 kcal Atomic # 16 Polarization: 6.82 SS G_CDS: -1.15 Total: 5.67 kcal Total: -58.37 5.42 -52.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396297194.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.189 kcal (2) G-P(sol) polarization free energy of solvation -58.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds